Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0007406

Physical Location & Seq

Genomic Coordinates Forward (+)

25657488 .. 25659356

Gene Structure 1869 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g22680.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGTTGCAGACCCAACACCTTCTCCTTTCCAATTTCCCCATCTTTCTCTCTCATCCCCAAACCCACTTTCTCTCACCTCCCAATCTCTCACCTTTTCCTCTCACTTTTCTCCACAAAACCACCAGTCTCTGCCCTGTATCAGCCCATTCCAGAGCCGGACCCGAACAATGGCTAGCCGAAGCTCCAGAACCCACCACCGCAACTCCATACACTCCCTTAGAGTTTGCTCCAGACGGTCCCGAAGAATTGCCACCGTCTTCTTCTCCAGTGTTTGCCACCAATGATGACCCTTCATCTCTCCAAGTGGCCACCAGTGTTCTTCTCACAGGAGCCATCACTGTCTTCCTCTTTCGCTCGCTGCGACGCCGTGCCAAGCGTGCTAAGGAACTGAAATATAGGTCATCTGGAATGAAGAAGACATTGAAGGATGAGGCTTTGGATAGCCTGAAAGCACTGTCTACAGGTTCTGTTGAAGCAAAAGGTCCACCGTCACCTGTTCAGGCGTTGTTGGGTGGAATATCAGCTGGCGTCATTGCGCTTATTCTTTATAAGTTCACTACTACAATTGAAGCATCTCTCAACCGCCAAACTATTTCTGATAATTTTTCGGTTCGTCAGATTACAATAACCATAAGGACCATTATAAATGGGTTGTGCTACCTTGCAACATTTGTGTTCGGCATCAATGCTGTGGGTTTAGTCCTTTATGCTGGTCAGCTCGCCATCAACTCTATCATGGAAGATATAAATGAAGACACTCAGACTCAAGGTAAGGAGCAGTCAGGCTCACTGAATTCAACGGTTGAAAGCCCCGCAAATAGTGGTGAGAACAGCAATAAGGATAATCAAAGTTCAGATGGAACACAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3082

Protein Analysis

290

Amino Acids

31.09

Weight (kDa)

5.97

Isoelectric Point (pI)

53.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007406)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15110
fragaria_vesca	FvH4_3g19170 FvH4_3g19170 FvH4_3g19170
malus_domestica	MD03G1235600.v1.1 MD11G1256600.v1.1
prunus_persica	Prupe.4G173400_v2.0.a1 Prupe.4G173400_v2.0.a1 Prupe.4G173400_v2.0.a1
pyrus_communis	pycom03g18210 pycom11g22680
rosa_chinensis	RchiOBHm_Chr5g0032261
rosa_laevigata	RLG00000033375
rosa_multiflora	Rmu_co8297163.1_g000001 Rmu_sc0018683.1_g000002 Rmu_sc0038270.1_g000002 Rmu_sc0038270.1_g000005 Rmu_sc0042408.1_g000002
rosa_roxburghii	Rroxscaffold_1G00048200
rosa_rugosa	Rorug05G0130100
rosa_samantha	Rh5AG223900 Rh5BG224600 Rh5CG250100 Rh5DG229300
rosa_wichuraiana	Rw5G020430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	549, 644
AccI	GTMKAC	1 cut(s)	458
AciI	CCGC	3 cut(s)	198, 583, 813
AcoI	YGGCCR	1 cut(s)	306
AcsI	RAATTY	1 cut(s)	793
AcyI	GRCGYC	2 cut(s)	364, 528
AfiI	CCNNNNNNNGG	1 cut(s)	168
AgsI	TTSAA	5 cut(s)	424, 473, 569, 798, 806
AjuI	GAANNNNNNNTTGG	2 cut(s)	51, 83
AluBI	AGCT	3 cut(s)	182, 524, 718
AluI	AGCT	3 cut(s)	182, 524, 718
Alw26I	GTCTC	1 cut(s)	131
AlwNI	CAGNNNCTG	2 cut(s)	129, 467
AoxI	GGCC	1 cut(s)	306
ApeKI	GCWGC	1 cut(s)	358
ApoI	RAATTY	1 cut(s)	793
AspLEI	GCGC	1 cut(s)	538
AspS9I	GGNCC	4 cut(s)	158, 236, 482, 636
AsuHPI	GGTGA	4 cut(s)	66, 81, 483, 836
AsuNHI	GCTAGC	1 cut(s)	172
AvaII	GGWCC	4 cut(s)	158, 236, 482, 636
BalI	TGGCCA	1 cut(s)	308
BbsI	GAAGAC	4 cut(s)	249, 334, 422, 759
BbvI	GCAGC	1 cut(s)	345
BccI	CCATC	4 cut(s)	47, 341, 731, 851
BceAI	ACGGC	1 cut(s)	351
BcoDI	GTCTC	1 cut(s)	131
BfaI	CTAG	1 cut(s)	173
BfmI	CTRYAG	1 cut(s)	459
BisI	GCNGC	1 cut(s)	359
BlsI	GCNGC	1 cut(s)	360
Bme18I	GGWCC	4 cut(s)	158, 236, 482, 636
BmgT120I	GGNCC	4 cut(s)	158, 236, 482, 636
BmiI	GGNNCC	3 cut(s)	160, 238, 331
BmsI	GCATC	2 cut(s)	581, 690
BmtI	GCTAGC	1 cut(s)	176
BpiI	GAAGAC	4 cut(s)	249, 334, 422, 759
BpmI	CTGGAG	3 cut(s)	168, 213, 249
Bpu10I	CCTNAGC	1 cut(s)	381
BpuEI	CTTGAG	1 cut(s)	750
BsaHI	GRCGYC	2 cut(s)	364, 528
BsaXI	ACNNNNNCTCC	4 cut(s)	6, 36, 187, 217
Bsc4I	CCNNNNNNNGG	1 cut(s)	168
Bse1I	ACTGG	3 cut(s)	123, 266, 312
Bse3DI	GCAATG	1 cut(s)	531
BseGI	GGATG	2 cut(s)	52, 433
BseLI	CCNNNNNNNGG	1 cut(s)	168
BseMI	GCAATG	1 cut(s)	531
BseMII	CTCAG	1 cut(s)	773
BseNI	ACTGG	3 cut(s)	123, 266, 312
BseXI	GCAGC	1 cut(s)	345
BshFI	GGCC	1 cut(s)	308
BsiSI	CCGG	1 cut(s)	156
BslFI	GGGAC	1 cut(s)	222
BslI	CCNNNNNNNGG	1 cut(s)	168
BsmAI	GTCTC	1 cut(s)	131
BsmFI	GGGAC	1 cut(s)	222
BsnI	GGCC	1 cut(s)	308
BspACI	CCGC	3 cut(s)	198, 583, 813
BspANI	GGCC	1 cut(s)	308
BspCNI	CTCAG	1 cut(s)	772
BspLI	GGNNCC	3 cut(s)	160, 238, 331
BspOI	GCTAGC	1 cut(s)	176
BsrDI	GCAATG	1 cut(s)	531
BsrI	ACTGG	3 cut(s)	123, 266, 312
BssNI	GRCGYC	2 cut(s)	364, 528
Bst4CI	ACNGT	6 cut(s)	236, 255, 340, 456, 489, 802
BstACI	GRCGYC	2 cut(s)	364, 528
BstC8I	GCNNGC	5 cut(s)	174, 356, 378, 526, 720
BstDEI	CTNAG	3 cut(s)	217, 381, 759
BstF5I	GGATG	2 cut(s)	52, 433
BstHHI	GCGC	1 cut(s)	538
BstMAI	GTCTC	1 cut(s)	131
BstMWI	GCNNNNNNNGC	1 cut(s)	377
BstSFI	CTRYAG	1 cut(s)	459
BstV1I	GCAGC	1 cut(s)	345
BstV2I	GAAGAC	4 cut(s)	249, 334, 422, 759
BsuRI	GGCC	1 cut(s)	308
BtsCI	GGATG	2 cut(s)	52, 433
BtsIMutI	CAGTG	5 cut(s)	273, 319, 336, 452, 788
Cac8I	GCNNGC	5 cut(s)	174, 356, 378, 526, 720
CaiI	CAGNNNCTG	2 cut(s)	129, 467
CfoI	GCGC	1 cut(s)	538
Cfr13I	GGNCC	4 cut(s)	158, 236, 482, 636
CseI	GACGC	2 cut(s)	372, 517
CviAII	CATG	1 cut(s)	736
DdeI	CTNAG	3 cut(s)	217, 381, 759
EaeI	YGGCCR	1 cut(s)	306
Eco47I	GGWCC	4 cut(s)	158, 236, 482, 636
EcoRI	GAATTC	1 cut(s)	793
FaeI	CATG	1 cut(s)	739
FaiI	YATR	8 cut(s)	208, 396, 549, 632, 644, 708, 737, 746
FaqI	GGGAC	1 cut(s)	222
FatI	CATG	1 cut(s)	735
FauI	CCCGC	1 cut(s)	820
FblI	GTMKAC	1 cut(s)	458
Fnu4HI	GCNGC	1 cut(s)	359
FokI	GGATG	2 cut(s)	39, 440
Fsp4HI	GCNGC	1 cut(s)	359
FspBI	CTAG	1 cut(s)	173
GlaI	GCGC	1 cut(s)	537
GluI	GCNGC	1 cut(s)	359
GsuI	CTGGAG	3 cut(s)	168, 213, 249
HaeIII	GGCC	1 cut(s)	308
HapII	CCGG	1 cut(s)	156
HgaI	GACGC	2 cut(s)	372, 517
HhaI	GCGC	1 cut(s)	538
Hin1I	GRCGYC	2 cut(s)	364, 528
Hin1II	CATG	1 cut(s)	739
Hin6I	GCGC	1 cut(s)	536
HinP1I	GCGC	1 cut(s)	536
HinfI	GANTC	1 cut(s)	763
HpaII	CCGG	1 cut(s)	156
HphI	GGTGA	4 cut(s)	66, 81, 483, 836
Hpy166II	GTNNAC	3 cut(s)	459, 485, 555
Hpy188I	TCNGA	4 cut(s)	598, 618, 762, 856
Hpy188III	TCNNGA	5 cut(s)	150, 185, 230, 239, 405
Hpy8I	GTNNAC	3 cut(s)	459, 485, 555
Hpy99I	CGWCG	1 cut(s)	366
HpyAV	CCTTC	3 cut(s)	29, 300, 418
HpyCH4III	ACNGT	6 cut(s)	236, 255, 340, 456, 489, 802
HpyCH4V	TGCA	2 cut(s)	7, 665
HpyF10VI	GCNNNNNNNGC	1 cut(s)	377
HpyF3I	CTNAG	3 cut(s)	217, 381, 759
Hsp92I	GRCGYC	2 cut(s)	364, 528
Hsp92II	CATG	1 cut(s)	739
HspAI	GCGC	1 cut(s)	536
LmnI	GCTCC	4 cut(s)	187, 232, 329, 775
Lsp1109I	GCAGC	1 cut(s)	345
LweI	GCATC	2 cut(s)	581, 690
MaeI	CTAG	1 cut(s)	173
MaeIII	GTNAC	1 cut(s)	489
MboII	GAAGA	9 cut(s)	249, 252, 254, 311, 334, 424, 427, 752, 764
MfeI	CAATTG	1 cut(s)	564
MlsI	TGGCCA	1 cut(s)	308
MluCI	AATT	5 cut(s)	31, 245, 564, 601, 793
MluNI	TGGCCA	1 cut(s)	308
MlyI	GAGTC	1 cut(s)	757
MnlI	CCTC	4 cut(s)	87, 108, 356, 424
Mox20I	TGGCCA	1 cut(s)	308
MscI	TGGCCA	1 cut(s)	308
Msp20I	TGGCCA	1 cut(s)	308
MspA1I	CMGCKG	1 cut(s)	524
MspI	CCGG	1 cut(s)	156
MunI	CAATTG	1 cut(s)	564
MwoI	GCNNNNNNNGC	1 cut(s)	377
NheI	GCTAGC	1 cut(s)	172
NlaIII	CATG	1 cut(s)	739
NlaIV	GGNNCC	3 cut(s)	160, 238, 331
NmuCI	GTSAC	1 cut(s)	489
PcsI	WCGNNNNNNNCGW	1 cut(s)	358
PkrI	GCNGC	1 cut(s)	360
PleI	GAGTC	1 cut(s)	757
PpsI	GAGTC	1 cut(s)	757
PsiI	TTATAA	2 cut(s)	549, 644
PspN4I	GGNNCC	3 cut(s)	160, 238, 331
PspPI	GGNCC	4 cut(s)	158, 236, 482, 636
PstNI	CAGNNNCTG	2 cut(s)	129, 467
PvuII	CAGCTG	1 cut(s)	524
SatI	GCNGC	1 cut(s)	359
Sau96I	GGNCC	4 cut(s)	158, 236, 482, 636
SchI	GAGTC	1 cut(s)	757
SfaNI	GCATC	2 cut(s)	581, 690
SfcI	CTRYAG	1 cut(s)	459
SinI	GGWCC	4 cut(s)	158, 236, 482, 636
SmlI	CTYRAG	1 cut(s)	765
SmoI	CTYRAG	1 cut(s)	765
Sse9I	AATT	5 cut(s)	31, 245, 564, 601, 793
SsiI	CCGC	3 cut(s)	198, 583, 813
SspMI	CTAG	1 cut(s)	173
TaaI	ACNGT	6 cut(s)	236, 255, 340, 456, 489, 802
TasI	AATT	5 cut(s)	31, 245, 564, 601, 793
TscAI	CASTG	5 cut(s)	273, 319, 343, 459, 795
TseFI	GTSAC	1 cut(s)	489
TseI	GCWGC	1 cut(s)	358
Tsp45I	GTSAC	1 cut(s)	489
TspDTI	ATGAA	3 cut(s)	282, 425, 765
TspRI	CASTG	5 cut(s)	273, 319, 343, 459, 795
VpaK11BI	GGWCC	4 cut(s)	158, 236, 482, 636
XapI	RAATTY	1 cut(s)	793
XmiI	GTMKAC	1 cut(s)	458
XspI	CTAG	1 cut(s)	173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.