Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0007406

Physical Location & Seq

Genomic Coordinates Forward (+)

19217493 .. 19219308

Gene Structure 1816 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g18210.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGTTGCAGACCCAACACCTTCTCCGTTCCAATTTCCCCATATTTCTCTCTCATCCCCAAACCCACTTTCTCTCTCCTCCTCCACTCAAATTTTTCCACAAACCCACCAATCTCCGCCCCGTCTCAGCCCATTCCAGACCCGGCCTCGAACAATGGCTAGCCGAAGCTCCAGAACCGACGACCGAAACTCCATACACACCCTTGGAATTTGCTCCAGACGGTCCCGAAGAATTGCCACCGTCTTCTTCTCCAGTGTTTGCCACCAATGATGACCCTTCATCTCTCCAAGTGGCCACCAGTGTTCTTCTCACCGGAGCCATCACTGTCTTCCTCTTTCGCTCGCTGCGACGCCGCGCCAAGCGTGCTAAAGAACTGAAATTTAGGTCATCTGAAGTGAAGAAGTCCTTGAAGGATGAGGCTTTGGATAGCTTGAAAGCACTTTCTACAGGTTCTGTTGAAGCAAAGGGTCCACCCTCACCTGTTCAGGCCTTGCTGGGTGGAATATCAGCCGGTGTCATTGCGCTTATTCTTTACAAGTTCACTACTACAATTGAAGCATCTCTCAACCGCCAAACTATTTCTGATAATTTTTCGGTTCGTCAGATTACAATAACCATCAGGACAATTATAAATGGGTTGTGCTACCTTGCAACATTTGTTTTCGGCATCAATGCTGTGGGTTTAGTCCTTTATGCTGGTCAGCTCGCCATCAACTCCATCATGGAAGGTACAAGTGAAGAAACTCAGACTCAAGGTAAGGAGCAGTCGGGCTCCTTCAATTCAATGGTTGAGAGCCCCGCAAATAGTGGTGAGAACAGTGATAGGGACGATCAAGGTTCAGATGGAACACAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3082

Protein Analysis

285

Amino Acids

30.8

Weight (kDa)

5.99

Isoelectric Point (pI)

52.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007406)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15110
fragaria_vesca	FvH4_3g19170 FvH4_3g19170 FvH4_3g19170
malus_domestica	MD03G1235600.v1.1 MD11G1256600.v1.1
prunus_persica	Prupe.4G173400_v2.0.a1 Prupe.4G173400_v2.0.a1 Prupe.4G173400_v2.0.a1
pyrus_communis	pycom03g18210 pycom11g22680
rosa_chinensis	RchiOBHm_Chr5g0032261
rosa_laevigata	RLG00000033375
rosa_multiflora	Rmu_co8297163.1_g000001 Rmu_sc0018683.1_g000002 Rmu_sc0038270.1_g000002 Rmu_sc0038270.1_g000005 Rmu_sc0042408.1_g000002
rosa_roxburghii	Rroxscaffold_1G00048200
rosa_rugosa	Rorug05G0130100
rosa_samantha	Rh5AG223900 Rh5BG224600 Rh5CG250100 Rh5DG229300
rosa_wichuraiana	Rw5G020430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	629
AccII	CGCG	1 cut(s)	354
AciI	CCGC	4 cut(s)	115, 352, 568, 798
AcoI	YGGCCR	1 cut(s)	291
AcsI	RAATTY	3 cut(s)	89, 206, 377
AcuI	CTGAAG	1 cut(s)	411
AcyI	GRCGYC	1 cut(s)	349
AfaI	GTAC	1 cut(s)	730
AgsI	TTSAA	6 cut(s)	409, 433, 458, 554, 778, 783
AjuI	GAANNNNNNNTTGG	2 cut(s)	51, 83
AluBI	AGCT	3 cut(s)	167, 429, 703
AluI	AGCT	3 cut(s)	167, 429, 703
Alw26I	GTCTC	1 cut(s)	127
AlwNI	CAGNNNCTG	1 cut(s)	452
AoxI	GGCC	3 cut(s)	142, 291, 486
ApeKI	GCWGC	1 cut(s)	343
ApoI	RAATTY	3 cut(s)	89, 206, 377
AspLEI	GCGC	2 cut(s)	356, 523
AspS9I	GGNCC	2 cut(s)	221, 467
AsuC2I	CCSGG	1 cut(s)	141
AsuHPI	GGTGA	3 cut(s)	301, 468, 821
AsuNHI	GCTAGC	1 cut(s)	157
AvaII	GGWCC	2 cut(s)	221, 467
BalI	TGGCCA	1 cut(s)	293
BanII	GRGCYC	2 cut(s)	773, 797
BbsI	GAAGAC	2 cut(s)	234, 319
BbvI	GCAGC	1 cut(s)	330
BccI	CCATC	5 cut(s)	326, 623, 716, 725, 836
BcnI	CCSGG	1 cut(s)	141
BcoDI	GTCTC	1 cut(s)	127
BfaI	CTAG	1 cut(s)	158
BfmI	CTRYAG	1 cut(s)	444
BisI	GCNGC	2 cut(s)	344, 352
BlsI	GCNGC	2 cut(s)	345, 353
Bme1390I	CCNGG	1 cut(s)	141
Bme18I	GGWCC	2 cut(s)	221, 467
BmgT120I	GGNCC	2 cut(s)	221, 467
BmiI	GGNNCC	4 cut(s)	223, 316, 468, 772
BmrFI	CCNGG	1 cut(s)	141
BmsI	GCATC	2 cut(s)	566, 675
BmtI	GCTAGC	1 cut(s)	161
BpiI	GAAGAC	2 cut(s)	234, 319
BpmI	CTGGAG	3 cut(s)	153, 198, 234
BpuEI	CTTGAG	1 cut(s)	735
BpuMI	CCSGG	1 cut(s)	141
BsaHI	GRCGYC	1 cut(s)	349
BsaJI	CCNNGG	1 cut(s)	201
BsaWI	WCCGGW	1 cut(s)	311
BsaXI	ACNNNNNCTCC	4 cut(s)	6, 36, 172, 202
Bse118I	RCCGGY	1 cut(s)	509
Bse1I	ACTGG	2 cut(s)	251, 297
Bse3DI	GCAATG	1 cut(s)	516
BseDI	CCNNGG	1 cut(s)	201
BseGI	GGATG	2 cut(s)	52, 418
BseMI	GCAATG	1 cut(s)	516
BseMII	CTCAG	2 cut(s)	138, 758
BseNI	ACTGG	2 cut(s)	251, 297
BseRI	GAGGAG	2 cut(s)	66, 69
BseXI	GCAGC	1 cut(s)	330
BseYI	CCCAGC	1 cut(s)	493
Bsh1236I	CGCG	1 cut(s)	354
Bsh1285I	CGRYCG	1 cut(s)	183
BshFI	GGCC	3 cut(s)	144, 293, 488
BsiEI	CGRYCG	1 cut(s)	183
BsiSI	CCGG	3 cut(s)	141, 312, 510
BslFI	GGGAC	2 cut(s)	207, 839
BsmAI	GTCTC	1 cut(s)	127
BsmBI	CGTCTC	1 cut(s)	127
BsmFI	GGGAC	2 cut(s)	207, 839
BsnI	GGCC	3 cut(s)	144, 293, 488
Bsp1286I	GDGCHC	2 cut(s)	773, 797
Bsp143I	GATC	1 cut(s)	829
BspACI	CCGC	4 cut(s)	115, 352, 568, 798
BspANI	GGCC	3 cut(s)	144, 293, 488
BspCNI	CTCAG	2 cut(s)	137, 757
BspFNI	CGCG	1 cut(s)	354
BspLI	GGNNCC	4 cut(s)	223, 316, 468, 772
BspOI	GCTAGC	1 cut(s)	161
BsrDI	GCAATG	1 cut(s)	516
BsrFI	RCCGGY	1 cut(s)	509
BsrI	ACTGG	2 cut(s)	251, 297
BssAI	RCCGGY	1 cut(s)	509
BssECI	CCNNGG	1 cut(s)	201
BssMI	GATC	1 cut(s)	829
BssNI	GRCGYC	1 cut(s)	349
BssT1I	CCWWGG	1 cut(s)	201
Bst4CI	ACNGT	4 cut(s)	221, 240, 325, 818
BstACI	GRCGYC	1 cut(s)	349
BstC8I	GCNNGC	4 cut(s)	159, 341, 363, 705
BstDEI	CTNAG	2 cut(s)	124, 744
BstF5I	GGATG	2 cut(s)	52, 418
BstFNI	CGCG	1 cut(s)	354
BstHHI	GCGC	2 cut(s)	356, 523
BstKTI	GATC	1 cut(s)	832
BstMAI	GTCTC	1 cut(s)	127
BstMBI	GATC	1 cut(s)	829
BstMCI	CGRYCG	1 cut(s)	183
BstMWI	GCNNNNNNNGC	1 cut(s)	362
BstSCI	CCNGG	1 cut(s)	139
BstSFI	CTRYAG	1 cut(s)	444
BstUI	CGCG	1 cut(s)	354
BstV1I	GCAGC	1 cut(s)	330
BstV2I	GAAGAC	2 cut(s)	234, 319
BsuRI	GGCC	3 cut(s)	144, 293, 488
BtsCI	GGATG	2 cut(s)	52, 418
BtsIMutI	CAGTG	4 cut(s)	258, 304, 321, 823
Cac8I	GCNNGC	4 cut(s)	159, 341, 363, 705
CaiI	CAGNNNCTG	1 cut(s)	452
CfoI	GCGC	2 cut(s)	356, 523
Cfr10I	RCCGGY	1 cut(s)	509
Cfr13I	GGNCC	2 cut(s)	221, 467
CseI	GACGC	1 cut(s)	357
Csp6I	GTAC	1 cut(s)	729
CviAII	CATG	1 cut(s)	721
CviQI	GTAC	1 cut(s)	729
DdeI	CTNAG	2 cut(s)	124, 744
DpnI	GATC	1 cut(s)	831
DpnII	GATC	1 cut(s)	829
EaeI	YGGCCR	1 cut(s)	291
EciI	GGCGGA	1 cut(s)	104
Eco130I	CCWWGG	1 cut(s)	201
Eco147I	AGGCCT	1 cut(s)	488
Eco24I	GRGCYC	2 cut(s)	773, 797
Eco47I	GGWCC	2 cut(s)	221, 467
Eco57I	CTGAAG	1 cut(s)	411
EcoT14I	CCWWGG	1 cut(s)	201
EcoT38I	GRGCYC	2 cut(s)	773, 797
ErhI	CCWWGG	1 cut(s)	201
Esp3I	CGTCTC	1 cut(s)	127
FaeI	CATG	1 cut(s)	724
FaiI	YATR	5 cut(s)	41, 193, 629, 693, 722
FalI	AAGNNNNNCTT	2 cut(s)	389, 421
FaqI	GGGAC	2 cut(s)	207, 839
FatI	CATG	1 cut(s)	720
FauI	CCCGC	1 cut(s)	805
Fnu4HI	GCNGC	2 cut(s)	344, 352
FokI	GGATG	2 cut(s)	39, 425
FriOI	GRGCYC	2 cut(s)	773, 797
Fsp4HI	GCNGC	2 cut(s)	344, 352
FspBI	CTAG	1 cut(s)	158
GlaI	GCGC	2 cut(s)	355, 522
GluI	GCNGC	2 cut(s)	344, 352
GsaI	CCCAGC	1 cut(s)	497
GsuI	CTGGAG	3 cut(s)	153, 198, 234
HaeIII	GGCC	3 cut(s)	144, 293, 488
HapII	CCGG	3 cut(s)	141, 312, 510
HgaI	GACGC	1 cut(s)	357
HhaI	GCGC	2 cut(s)	356, 523
Hin1I	GRCGYC	1 cut(s)	349
Hin1II	CATG	1 cut(s)	724
Hin6I	GCGC	2 cut(s)	354, 521
HinP1I	GCGC	2 cut(s)	354, 521
HinfI	GANTC	1 cut(s)	748
HpaII	CCGG	3 cut(s)	141, 312, 510
HphI	GGTGA	3 cut(s)	301, 468, 821
Hpy166II	GTNNAC	2 cut(s)	470, 540
Hpy188I	TCNGA	5 cut(s)	391, 583, 603, 747, 841
Hpy188III	TCNNGA	5 cut(s)	135, 170, 215, 224, 619
Hpy8I	GTNNAC	2 cut(s)	470, 540
Hpy99I	CGWCG	2 cut(s)	181, 351
HpyAV	CCTTC	5 cut(s)	29, 285, 403, 719, 784
HpyCH4III	ACNGT	4 cut(s)	221, 240, 325, 818
HpyCH4V	TGCA	2 cut(s)	7, 650
HpyF10VI	GCNNNNNNNGC	1 cut(s)	362
HpyF3I	CTNAG	2 cut(s)	124, 744
Hsp92I	GRCGYC	1 cut(s)	349
Hsp92II	CATG	1 cut(s)	724
HspAI	GCGC	2 cut(s)	354, 521
Kzo9I	GATC	1 cut(s)	829
LmnI	GCTCC	5 cut(s)	172, 217, 314, 760, 776
Lsp1109I	GCAGC	1 cut(s)	330
LweI	GCATC	2 cut(s)	566, 675
MaeI	CTAG	1 cut(s)	158
MalI	GATC	1 cut(s)	831
MboI	GATC	1 cut(s)	829
MboII	GAAGA	7 cut(s)	234, 237, 239, 296, 319, 409, 749
MfeI	CAATTG	1 cut(s)	549
MhlI	GDGCHC	2 cut(s)	773, 797
MlsI	TGGCCA	1 cut(s)	293
MluCI	AATT	9 cut(s)	31, 89, 206, 230, 377, 549, 586, 624, 778
MluNI	TGGCCA	1 cut(s)	293
MlyI	GAGTC	1 cut(s)	742
MnlI	CCTC	6 cut(s)	87, 90, 155, 341, 409, 484
Mox20I	TGGCCA	1 cut(s)	293
MscI	TGGCCA	1 cut(s)	293
Msp20I	TGGCCA	1 cut(s)	293
MspI	CCGG	3 cut(s)	141, 312, 510
MspR9I	CCNGG	1 cut(s)	141
MunI	CAATTG	1 cut(s)	549
MvnI	CGCG	1 cut(s)	354
MwoI	GCNNNNNNNGC	1 cut(s)	362
NciI	CCSGG	1 cut(s)	141
NdeII	GATC	1 cut(s)	829
NheI	GCTAGC	1 cut(s)	157
NlaIII	CATG	1 cut(s)	724
NlaIV	GGNNCC	4 cut(s)	223, 316, 468, 772
PceI	AGGCCT	1 cut(s)	488
PcsI	WCGNNNNNNNCGW	1 cut(s)	343
PkrI	GCNGC	2 cut(s)	345, 353
PleI	GAGTC	1 cut(s)	742
PpsI	GAGTC	1 cut(s)	742
PsiI	TTATAA	1 cut(s)	629
PspFI	CCCAGC	1 cut(s)	493
PspN4I	GGNNCC	4 cut(s)	223, 316, 468, 772
PspPI	GGNCC	2 cut(s)	221, 467
PstNI	CAGNNNCTG	1 cut(s)	452
RsaI	GTAC	1 cut(s)	730
RsaNI	GTAC	1 cut(s)	729
SatI	GCNGC	2 cut(s)	344, 352
Sau3AI	GATC	1 cut(s)	829
Sau96I	GGNCC	2 cut(s)	221, 467
SchI	GAGTC	1 cut(s)	742
ScrFI	CCNGG	1 cut(s)	141
SduI	GDGCHC	2 cut(s)	773, 797
SfaNI	GCATC	2 cut(s)	566, 675
SfcI	CTRYAG	1 cut(s)	444
SinI	GGWCC	2 cut(s)	221, 467
SmlI	CTYRAG	1 cut(s)	750
SmoI	CTYRAG	1 cut(s)	750
Sse9I	AATT	9 cut(s)	31, 89, 206, 230, 377, 549, 586, 624, 778
SseBI	AGGCCT	1 cut(s)	488
SsiI	CCGC	4 cut(s)	115, 352, 568, 798
SspMI	CTAG	1 cut(s)	158
StuI	AGGCCT	1 cut(s)	488
StyD4I	CCNGG	1 cut(s)	139
StyI	CCWWGG	1 cut(s)	201
TaaI	ACNGT	4 cut(s)	221, 240, 325, 818
TaqI	TCGA	1 cut(s)	147
TaqII	GACCGA	1 cut(s)	197
TasI	AATT	9 cut(s)	31, 89, 206, 230, 377, 549, 586, 624, 778
TauI	GCSGC	1 cut(s)	354
TscAI	CASTG	4 cut(s)	258, 304, 328, 823
TseI	GCWGC	1 cut(s)	343
TspDTI	ATGAA	1 cut(s)	267
TspGWI	ACGGA	1 cut(s)	14
TspRI	CASTG	4 cut(s)	258, 304, 328, 823
VpaK11BI	GGWCC	2 cut(s)	221, 467
XapI	RAATTY	3 cut(s)	89, 206, 377
XspI	CTAG	1 cut(s)	158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.