MD11G1256600.v1.1

Protein of unknown function (DUF3082)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0007406
Physical Location & Seq
Forward (+)
36915568 .. 36916785
1218 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1256600.v1.1.491

Sequence Viewer

Length: 672 bp
ATGTTGCAGACCCAACACCTTCTCCTTTCCAATTTCCCCATCTTTCTCTCTCATCCCCAAACCAACTTTCTCTCACCTCCCAATCTCTCACCTTTTCCTCTCACTTTTCTCCACAAACCCACCAGTCTCTGCCCTGTCTCAGCCCATTCCAGAGCCGGACCCGAACAATGGCTAGCCGAAGCTCCAGAACCCACCACCGCGACCCCATACACTCCCTTAGAATTTGCTCCAGACGGTCCCGAAGAATTGCCACCGTCTTCTTCTCCAGTGTTTGCCACCAATGATGACCCTTCATCTCTCCAAGTGGCCACCAGTGTTCTTCTCACAGGTGCCATCACTGTCTTCCTCTTTCGCTCGCTGCGACGCCGTGCCAAGCGTGCTAAAGAACTGAAATATAGGTCATCTGGAGTGAAGAAGTCATTGAAGGATGAGGCTTTGGATAGCTTGAAAGCACTGTCTACAGGTTCTGTTGAAGCAAAGGGTCCACCGTCACCTGTTCAGGCGTTGTTGGGTGGAATATCAGCCGGCGTCATTGCACTTATTCTTTATAAGTTCACTACTACAATTGAAGCATCTCTCAACCGCCAAACTATTTCTGATAATTTTTCGGTTTGTCCCTTCATTGCTCGTGTCCTTGATTTTTCTGTTCTGGACATATTTTTGTTTAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3082

Protein Analysis

224

Amino Acids

24.18

Weight (kDa)

7.8

Isoelectric Point (pI)

55.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3082 PF11282 163 - 203 4.9e-08 Protein of unknown function (DUF3082)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 549
AccB1I GGYRCC 1 cut(s) 329
AccI GTMKAC 1 cut(s) 458
AccII CGCG 1 cut(s) 200
AciI CCGC 2 cut(s) 198, 583
AcoI YGGCCR 1 cut(s) 306
AcsI RAATTY 1 cut(s) 221
AcyI GRCGYC 2 cut(s) 364, 528
AfiI CCNNNNNNNGG 1 cut(s) 168
AgsI TTSAA 4 cut(s) 424, 448, 473, 569
AjuI GAANNNNNNNTTGG 2 cut(s) 51, 83
AluBI AGCT 2 cut(s) 182, 444
AluI AGCT 2 cut(s) 182, 444
Alw26I GTCTC 2 cut(s) 131, 142
AlwNI CAGNNNCTG 2 cut(s) 129, 467
AoxI GGCC 1 cut(s) 306
ApeKI GCWGC 1 cut(s) 358
ApoI RAATTY 1 cut(s) 221
AspS9I GGNCC 3 cut(s) 158, 236, 482
AsuHPI GGTGA 3 cut(s) 66, 81, 483
AsuNHI GCTAGC 1 cut(s) 172
AvaII GGWCC 3 cut(s) 158, 236, 482
BalI TGGCCA 1 cut(s) 308
BanI GGYRCC 1 cut(s) 329
BauI CACGAG 1 cut(s) 627
BbsI GAAGAC 2 cut(s) 249, 334
BbvI GCAGC 1 cut(s) 345
BccI CCATC 2 cut(s) 47, 341
BceAI ACGGC 1 cut(s) 351
BcoDI GTCTC 2 cut(s) 131, 142
BfaI CTAG 1 cut(s) 173
BfmI CTRYAG 1 cut(s) 459
BisI GCNGC 1 cut(s) 359
BlsI GCNGC 1 cut(s) 360
Bme18I GGWCC 3 cut(s) 158, 236, 482
BmgT120I GGNCC 3 cut(s) 158, 236, 482
BmiI GGNNCC 4 cut(s) 160, 238, 331, 483
BmsI GCATC 1 cut(s) 581
BmtI GCTAGC 1 cut(s) 176
BpiI GAAGAC 2 cut(s) 249, 334
BpmI CTGGAG 4 cut(s) 168, 213, 249, 426
BsaHI GRCGYC 2 cut(s) 364, 528
BsaXI ACNNNNNCTCC 2 cut(s) 6, 36
Bsc4I CCNNNNNNNGG 1 cut(s) 168
Bse118I RCCGGY 1 cut(s) 524
Bse1I ACTGG 3 cut(s) 123, 266, 312
Bse3DI GCAATG 2 cut(s) 531, 621
BseGI GGATG 2 cut(s) 52, 433
BseLI CCNNNNNNNGG 1 cut(s) 168
BseMI GCAATG 2 cut(s) 531, 621
BseMII CTCAG 1 cut(s) 153
BseNI ACTGG 3 cut(s) 123, 266, 312
BseXI GCAGC 1 cut(s) 345
Bsh1236I CGCG 1 cut(s) 200
BshFI GGCC 1 cut(s) 308
BshNI GGYRCC 1 cut(s) 329
BsiSI CCGG 2 cut(s) 156, 525
BslFI GGGAC 2 cut(s) 222, 600
BslI CCNNNNNNNGG 1 cut(s) 168
BsmAI GTCTC 2 cut(s) 131, 142
BsmFI GGGAC 2 cut(s) 222, 600
BsnI GGCC 1 cut(s) 308
BspACI CCGC 2 cut(s) 198, 583
BspANI GGCC 1 cut(s) 308
BspCNI CTCAG 1 cut(s) 152
BspFNI CGCG 1 cut(s) 200
BspLI GGNNCC 4 cut(s) 160, 238, 331, 483
BspOI GCTAGC 1 cut(s) 176
BspT107I GGYRCC 1 cut(s) 329
BsrDI GCAATG 2 cut(s) 531, 621
BsrFI RCCGGY 1 cut(s) 524
BsrI ACTGG 3 cut(s) 123, 266, 312
BssAI RCCGGY 1 cut(s) 524
BssNI GRCGYC 2 cut(s) 364, 528
BssSI CACGAG 1 cut(s) 627
Bst2BI CACGAG 1 cut(s) 627
Bst4CI ACNGT 5 cut(s) 236, 255, 340, 456, 489
BstACI GRCGYC 2 cut(s) 364, 528
BstC8I GCNNGC 4 cut(s) 174, 356, 378, 526
BstDEI CTNAG 2 cut(s) 139, 217
BstF5I GGATG 2 cut(s) 52, 433
BstFNI CGCG 1 cut(s) 200
BstMAI GTCTC 2 cut(s) 131, 142
BstMWI GCNNNNNNNGC 1 cut(s) 377
BstSFI CTRYAG 1 cut(s) 459
BstUI CGCG 1 cut(s) 200
BstV1I GCAGC 1 cut(s) 345
BstV2I GAAGAC 2 cut(s) 249, 334
BsuRI GGCC 1 cut(s) 308
BtsCI GGATG 2 cut(s) 52, 433
BtsIMutI CAGTG 4 cut(s) 273, 319, 336, 452
Cac8I GCNNGC 4 cut(s) 174, 356, 378, 526
CaiI CAGNNNCTG 2 cut(s) 129, 467
Cfr10I RCCGGY 1 cut(s) 524
Cfr13I GGNCC 3 cut(s) 158, 236, 482
CseI GACGC 2 cut(s) 372, 517
CviJI RGCY 9 cut(s) 143, 155, 172, 176, 182, 308, 434, 444, 524
CviKI_1 RGCY 9 cut(s) 143, 155, 172, 176, 182, 308, 434, 444, 524
DdeI CTNAG 2 cut(s) 139, 217
EaeI YGGCCR 1 cut(s) 306
Eco47I GGWCC 3 cut(s) 158, 236, 482
FaiI YATR 4 cut(s) 208, 396, 549, 656
FaqI GGGAC 2 cut(s) 222, 600
FblI GTMKAC 1 cut(s) 458
Fnu4HI GCNGC 1 cut(s) 359
FokI GGATG 2 cut(s) 39, 440
Fsp4HI GCNGC 1 cut(s) 359
FspBI CTAG 1 cut(s) 173
GluI GCNGC 1 cut(s) 359
GsuI CTGGAG 4 cut(s) 168, 213, 249, 426
HaeIII GGCC 1 cut(s) 308
HapII CCGG 2 cut(s) 156, 525
HgaI GACGC 2 cut(s) 372, 517
Hin1I GRCGYC 2 cut(s) 364, 528
HpaII CCGG 2 cut(s) 156, 525
HphI GGTGA 3 cut(s) 66, 81, 483
Hpy166II GTNNAC 3 cut(s) 459, 485, 555
Hpy188I TCNGA 1 cut(s) 598
Hpy188III TCNNGA 6 cut(s) 150, 185, 230, 239, 405, 650
Hpy8I GTNNAC 3 cut(s) 459, 485, 555
Hpy99I CGWCG 1 cut(s) 366
HpyAV CCTTC 4 cut(s) 29, 300, 418, 628
HpyCH4III ACNGT 5 cut(s) 236, 255, 340, 456, 489
HpyCH4V TGCA 2 cut(s) 7, 536
HpyF10VI GCNNNNNNNGC 1 cut(s) 377
HpyF3I CTNAG 2 cut(s) 139, 217
Hsp92I GRCGYC 2 cut(s) 364, 528
KroI GCCGGC 1 cut(s) 524
KroNI GCCGGC 1 cut(s) 526
LmnI GCTCC 2 cut(s) 187, 232
Lsp1109I GCAGC 1 cut(s) 345
LweI GCATC 1 cut(s) 581
MaeI CTAG 1 cut(s) 173
MaeIII GTNAC 1 cut(s) 489
MboII GAAGA 6 cut(s) 249, 252, 254, 311, 334, 424
MfeI CAATTG 1 cut(s) 564
MlsI TGGCCA 1 cut(s) 308
MluCI AATT 5 cut(s) 31, 221, 245, 564, 601
MluNI TGGCCA 1 cut(s) 308
MnlI CCTC 4 cut(s) 87, 108, 356, 424
Mox20I TGGCCA 1 cut(s) 308
MroNI GCCGGC 1 cut(s) 524
MscI TGGCCA 1 cut(s) 308
MseI TTAA 1 cut(s) 666
Msp20I TGGCCA 1 cut(s) 308
MspI CCGG 2 cut(s) 156, 525
MunI CAATTG 1 cut(s) 564
MvnI CGCG 1 cut(s) 200
MwoI GCNNNNNNNGC 1 cut(s) 377
NaeI GCCGGC 1 cut(s) 526
NgoMIV GCCGGC 1 cut(s) 524
NheI GCTAGC 1 cut(s) 172
NlaIV GGNNCC 4 cut(s) 160, 238, 331, 483
NmuCI GTSAC 1 cut(s) 489
PcsI WCGNNNNNNNCGW 1 cut(s) 358
PdiI GCCGGC 1 cut(s) 526
PkrI GCNGC 1 cut(s) 360
PsiI TTATAA 1 cut(s) 549
PspN4I GGNNCC 4 cut(s) 160, 238, 331, 483
PspPI GGNCC 3 cut(s) 158, 236, 482
PstNI CAGNNNCTG 2 cut(s) 129, 467
SaqAI TTAA 1 cut(s) 666
SatI GCNGC 1 cut(s) 359
Sau96I GGNCC 3 cut(s) 158, 236, 482
SetI ASST 9 cut(s) 21, 79, 94, 184, 331, 401, 446, 466, 496
SfaNI GCATC 1 cut(s) 581
SfcI CTRYAG 1 cut(s) 459
SinI GGWCC 3 cut(s) 158, 236, 482
Sse9I AATT 5 cut(s) 31, 221, 245, 564, 601
SsiI CCGC 2 cut(s) 198, 583
SspMI CTAG 1 cut(s) 173
TaaI ACNGT 5 cut(s) 236, 255, 340, 456, 489
TasI AATT 5 cut(s) 31, 221, 245, 564, 601
Tru1I TTAA 1 cut(s) 666
Tru9I TTAA 1 cut(s) 666
TscAI CASTG 4 cut(s) 273, 319, 343, 459
TseFI GTSAC 1 cut(s) 489
TseI GCWGC 1 cut(s) 358
Tsp45I GTSAC 1 cut(s) 489
TspDTI ATGAA 2 cut(s) 282, 610
TspRI CASTG 4 cut(s) 273, 319, 343, 459
VpaK11BI GGWCC 3 cut(s) 158, 236, 482
XapI RAATTY 1 cut(s) 221
XmiI GTMKAC 1 cut(s) 458
XspI CTAG 1 cut(s) 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.