AT3G15840

post-illumination chlorophyll fluorescence increase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0008492
Physical Location & Seq
Reverse (-)
5356587 .. 5358596
2010 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G15840.5

Sequence Viewer

Length: 807 bp
ATGGCTGCTGCCGCTAATACCTCCGCCGTTTTCGCCTCTCCGTCGCAGCCTTTATCCTCGAAACGTAGTTTTTTGTACAGTTCAAGGATTGGTCCAATACTAAGGAGATTTCCGAGGAAGAAACTTGATCTCCAAGTTAAAGCTGTTGCCACGACTCTTGCACCTCTCGAAGAGATCAAAGAATACAAGCTTCCTTCATGGGCCATGTTCGAGATGGGTACTGCTCCTGTGTACTGGAAAACCATGAATGGTCTTCCACCAACCTCAGGTGAAAAGTTGAAACTTTTCTATAATCCAGCTGCAAGCAAACTCACTCTTAACGAAGACTATGGGGTTGCTTTCAACGGAGGATTTAACCAACCAATCATGTGTGGTGGGGAGCCAAGAGCAATGCTTAAGAAAGATCGAGGCAAAGCCGATTCTCCGATATACACTATGCAGATTTGCATTCCTAAGCATGCTGTGAATTTGATATTCTCATTCACTAATGGTGTCGATTGGGACGGTCCATACAGACTTCAGTTTCAAGTCCCCAAGCGATGGCAAAACAAACCTATTGAGTTCTTCAATGAGGGTCTAGCGAACGAGTTGAGCCAAGATGGAGCCTGCGAAAGAGCAATATTTCCTGACTCGAACGTTGTTCCAACTCGTTGCACGATGATCGCCAACTTGACGGTCGAAGGAGGAGATAGATGCAACTTGGATCTAGTTCCTGGATGCATGGATACAAATTCAGAACATTTCAACCCATATGCTAATGTTGATGATGGCTCTTGTCCCCTCGAGTTATCCGATTCTGATGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

268

Amino Acids

29.69

Weight (kDa)

5.84

Isoelectric Point (pI)

43.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ig_PIFI PF25419 48 - 177 7.2e-74 PIFI-like, immunoglobulin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 540
AciI CCGC 2 cut(s) 12, 24
AclI AACGTT 1 cut(s) 636
AclWI GGATC 1 cut(s) 711
AcsI RAATTY 2 cut(s) 466, 730
AcuI CTGAAG 1 cut(s) 503
AfaI GTAC 3 cut(s) 77, 220, 233
AfiI CCNNNNNNNGG 2 cut(s) 266, 540
AflII CTTAAG 1 cut(s) 395
AgsI TTSAA 6 cut(s) 84, 280, 343, 527, 568, 745
AjnI CCWGG 1 cut(s) 712
AluBI AGCT 3 cut(s) 143, 190, 299
AluI AGCT 3 cut(s) 143, 190, 299
AlwI GGATC 1 cut(s) 711
Ama87I CYCGRG 1 cut(s) 782
AoxI GGCC 1 cut(s) 201
ApeKI GCWGC 4 cut(s) 5, 8, 46, 299
ApoI RAATTY 2 cut(s) 466, 730
Asp700I GAANNNNTTC 1 cut(s) 284
AspS9I GGNCC 3 cut(s) 92, 201, 506
AsuHPI GGTGA 1 cut(s) 281
AvaI CYCGRG 1 cut(s) 782
AvaII GGWCC 2 cut(s) 92, 506
AxyI CCTNAGG 1 cut(s) 265
BbsI GAAGAC 2 cut(s) 245, 330
BbvI GCAGC 2 cut(s) 58, 286
BccI CCATC 4 cut(s) 208, 534, 593, 761
BceAI ACGGC 1 cut(s) 11
BcgI CGANNNNNNTGC 2 cut(s) 643, 677
BciT130I CCWGG 1 cut(s) 714
BciVI GTATCC 1 cut(s) 718
BfaI CTAG 2 cut(s) 578, 707
BfrI CTTAAG 1 cut(s) 395
BfuI GTATCC 1 cut(s) 718
BisI GCNGC 5 cut(s) 6, 9, 12, 47, 300
BlsI GCNGC 5 cut(s) 7, 10, 13, 48, 301
Bme1390I CCNGG 1 cut(s) 714
Bme18I GGWCC 2 cut(s) 92, 506
BmeT110I CYCGRG 1 cut(s) 782
BmgT120I GGNCC 3 cut(s) 92, 201, 506
BmiI GGNNCC 2 cut(s) 381, 604
BmrFI CCNGG 1 cut(s) 714
BmsI GCATC 2 cut(s) 683, 707
BpiI GAAGAC 2 cut(s) 245, 330
Bpu10I CCTNAGC 1 cut(s) 453
BsaJI CCNNGG 1 cut(s) 113
BsaXI ACNNNNNCTCC 2 cut(s) 114, 144
Bsc4I CCNNNNNNNGG 2 cut(s) 266, 540
Bse1I ACTGG 1 cut(s) 239
Bse21I CCTNAGG 1 cut(s) 265
Bse3DI GCAATG 1 cut(s) 396
BseBI CCWGG 1 cut(s) 714
BseDI CCNNGG 1 cut(s) 113
BseGI GGATG 1 cut(s) 722
BseLI CCNNNNNNNGG 2 cut(s) 266, 540
BseMI GCAATG 1 cut(s) 396
BseMII CTCAG 1 cut(s) 279
BseNI ACTGG 1 cut(s) 239
BseRI GAGGAG 1 cut(s) 699
BseXI GCAGC 2 cut(s) 58, 286
Bsh1285I CGRYCG 1 cut(s) 678
BshFI GGCC 1 cut(s) 203
BsiEI CGRYCG 1 cut(s) 678
BsiHKCI CYCGRG 1 cut(s) 782
BslFI GGGAC 3 cut(s) 515, 515, 762
BslI CCNNNNNNNGG 2 cut(s) 266, 540
BsmFI GGGAC 3 cut(s) 515, 515, 762
BsmI GAATGC 1 cut(s) 447
BsnI GGCC 1 cut(s) 203
BsoBI CYCGRG 1 cut(s) 782
Bsp1407I TGTACA 1 cut(s) 75
Bsp143I GATC 5 cut(s) 127, 174, 403, 660, 703
BspACI CCGC 2 cut(s) 12, 24
BspANI GGCC 1 cut(s) 203
BspCNI CTCAG 1 cut(s) 278
BspLI GGNNCC 2 cut(s) 381, 604
BspPI GGATC 1 cut(s) 711
BspTI CTTAAG 1 cut(s) 395
BsrDI GCAATG 1 cut(s) 396
BsrGI TGTACA 1 cut(s) 75
BsrI ACTGG 1 cut(s) 239
BssECI CCNNGG 1 cut(s) 113
BssMI GATC 5 cut(s) 127, 174, 403, 660, 703
Bst2UI CCWGG 1 cut(s) 714
Bst4CI ACNGT 3 cut(s) 80, 506, 676
Bst6I CTCTTC 1 cut(s) 165
BstAFI CTTAAG 1 cut(s) 395
BstAUI TGTACA 1 cut(s) 75
BstC8I GCNNGC 3 cut(s) 304, 459, 607
BstDEI CTNAG 3 cut(s) 101, 265, 453
BstF5I GGATG 1 cut(s) 722
BstKTI GATC 5 cut(s) 130, 177, 406, 663, 706
BstMBI GATC 5 cut(s) 127, 174, 403, 660, 703
BstMCI CGRYCG 1 cut(s) 678
BstMWI GCNNNNNNNGC 2 cut(s) 11, 32
BstNI CCWGG 1 cut(s) 714
BstNSI RCATGY 1 cut(s) 461
BstSCI CCNGG 1 cut(s) 712
BstV1I GCAGC 2 cut(s) 58, 286
BstV2I GAAGAC 2 cut(s) 245, 330
BstX2I RGATCY 1 cut(s) 703
BstYI RGATCY 1 cut(s) 703
Bsu36I CCTNAGG 1 cut(s) 265
BsuI GTATCC 1 cut(s) 718
BsuRI GGCC 1 cut(s) 203
BtgZI GCGATG 1 cut(s) 553
BtsCI GGATG 1 cut(s) 722
Cac8I GCNNGC 3 cut(s) 304, 459, 607
Cfr13I GGNCC 3 cut(s) 92, 201, 506
Csp6I GTAC 3 cut(s) 76, 219, 232
CspCI CAANNNNNGTGG 2 cut(s) 139, 174
CviAII CATG 6 cut(s) 198, 205, 244, 367, 458, 721
CviQI GTAC 3 cut(s) 76, 219, 232
DdeI CTNAG 3 cut(s) 101, 265, 453
DpnI GATC 5 cut(s) 129, 176, 405, 662, 705
DpnII GATC 5 cut(s) 127, 174, 403, 660, 703
Eam1104I CTCTTC 1 cut(s) 165
EarI CTCTTC 1 cut(s) 165
EciI GGCGGA 1 cut(s) 13
Eco47I GGWCC 2 cut(s) 92, 506
Eco57I CTGAAG 1 cut(s) 503
Eco81I CCTNAGG 1 cut(s) 265
Eco88I CYCGRG 1 cut(s) 782
EcoRII CCWGG 1 cut(s) 712
EcoT22I ATGCAT 1 cut(s) 722
FaeI CATG 6 cut(s) 201, 208, 247, 370, 461, 724
FaqI GGGAC 3 cut(s) 515, 515, 762
FatI CATG 6 cut(s) 197, 204, 243, 366, 457, 720
FauNDI CATATG 1 cut(s) 751
Fnu4HI GCNGC 5 cut(s) 6, 9, 12, 47, 300
FokI GGATG 1 cut(s) 729
Fsp4HI GCNGC 5 cut(s) 6, 9, 12, 47, 300
FspBI CTAG 2 cut(s) 578, 707
GluI GCNGC 5 cut(s) 6, 9, 12, 47, 300
HaeIII GGCC 1 cut(s) 203
Hin1II CATG 6 cut(s) 201, 208, 247, 370, 461, 724
HindIII AAGCTT 1 cut(s) 188
HinfI GANTC 4 cut(s) 154, 419, 629, 794
HphI GGTGA 1 cut(s) 281
Hpy166II GTNNAC 1 cut(s) 232
Hpy188I TCNGA 5 cut(s) 114, 426, 736, 793, 799
Hpy188III TCNNGA 3 cut(s) 167, 211, 626
Hpy8I GTNNAC 1 cut(s) 232
Hpy99I CGWCG 1 cut(s) 46
HpyAV CCTTC 2 cut(s) 204, 674
HpyCH4III ACNGT 3 cut(s) 80, 506, 676
HpyCH4IV ACGT 2 cut(s) 64, 636
HpyCH4V TGCA 7 cut(s) 161, 302, 439, 447, 654, 696, 720
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 32
HpyF3I CTNAG 3 cut(s) 101, 265, 453
HpySE526I ACGT 2 cut(s) 64, 636
Hsp92II CATG 6 cut(s) 201, 208, 247, 370, 461, 724
Kzo9I GATC 5 cut(s) 127, 174, 403, 660, 703
LmnI GCTCC 3 cut(s) 229, 379, 602
LpnPI CCDG 8 cut(s) 220, 240, 252, 309, 619, 639, 699, 726
Lsp1109I GCAGC 2 cut(s) 58, 286
LweI GCATC 2 cut(s) 683, 707
MaeI CTAG 2 cut(s) 578, 707
MaeII ACGT 2 cut(s) 64, 636
MalI GATC 5 cut(s) 129, 176, 405, 662, 705
MboI GATC 5 cut(s) 127, 174, 403, 660, 703
MboII GAAGA 5 cut(s) 130, 182, 245, 335, 556
MflI RGATCY 1 cut(s) 703
MluCI AATT 2 cut(s) 466, 730
MlyI GAGTC 2 cut(s) 148, 623
MmeI TCCRAC 1 cut(s) 668
Mph1103I ATGCAT 1 cut(s) 722
MroXI GAANNNNTTC 1 cut(s) 284
MseI TTAA 4 cut(s) 138, 318, 354, 396
MspA1I CMGCKG 1 cut(s) 299
MspCI CTTAAG 1 cut(s) 395
MspR9I CCNGG 1 cut(s) 714
Mva1269I GAATGC 1 cut(s) 447
MvaI CCWGG 1 cut(s) 714
MwoI GCNNNNNNNGC 2 cut(s) 11, 32
NdeI CATATG 1 cut(s) 751
NdeII GATC 5 cut(s) 127, 174, 403, 660, 703
NlaIII CATG 6 cut(s) 201, 208, 247, 370, 461, 724
NlaIV GGNNCC 2 cut(s) 381, 604
NsiI ATGCAT 1 cut(s) 722
NspI RCATGY 1 cut(s) 461
PaeI GCATGC 1 cut(s) 461
PaeR7I CTCGAG 1 cut(s) 782
PcsI WCGNNNNNNNCGW 1 cut(s) 789
PctI GAATGC 1 cut(s) 447
PdmI GAANNNNTTC 1 cut(s) 284
PfeI GAWTC 2 cut(s) 419, 794
PflMI CCANNNNNTGG 1 cut(s) 540
PfoI TCCNGGA 1 cut(s) 712
PkrI GCNGC 5 cut(s) 7, 10, 13, 48, 301
PleI GAGTC 2 cut(s) 148, 623
PpsI GAGTC 2 cut(s) 148, 623
Psp1406I AACGTT 1 cut(s) 636
Psp6I CCWGG 1 cut(s) 712
PspGI CCWGG 1 cut(s) 712
PspN4I GGNNCC 2 cut(s) 381, 604
PspPI GGNCC 3 cut(s) 92, 201, 506
PspXI VCTCGAGB 1 cut(s) 782
PsuI RGATCY 1 cut(s) 703
PvuII CAGCTG 1 cut(s) 299
RsaI GTAC 3 cut(s) 77, 220, 233
RsaNI GTAC 3 cut(s) 76, 219, 232
SaqAI TTAA 4 cut(s) 138, 318, 354, 396
SatI GCNGC 5 cut(s) 6, 9, 12, 47, 300
Sau3AI GATC 5 cut(s) 127, 174, 403, 660, 703
Sau96I GGNCC 3 cut(s) 92, 201, 506
SchI GAGTC 2 cut(s) 148, 623
ScrFI CCNGG 1 cut(s) 714
SfaNI GCATC 2 cut(s) 683, 707
Sfr274I CTCGAG 1 cut(s) 782
SinI GGWCC 2 cut(s) 92, 506
SlaI CTCGAG 1 cut(s) 782
SmlI CTYRAG 2 cut(s) 395, 782
SmoI CTYRAG 2 cut(s) 395, 782
SphI GCATGC 1 cut(s) 461
Sse9I AATT 2 cut(s) 466, 730
SsiI CCGC 2 cut(s) 12, 24
SspI AATATT 1 cut(s) 621
SspMI CTAG 2 cut(s) 578, 707
StyD4I CCNGG 1 cut(s) 712
TaaI ACNGT 3 cut(s) 80, 506, 676
TaiI ACGT 2 cut(s) 67, 639
TaqI TCGA 8 cut(s) 59, 168, 210, 406, 495, 632, 678, 783
TasI AATT 2 cut(s) 466, 730
TatI WGTACW 2 cut(s) 75, 231
TauI GCSGC 1 cut(s) 14
TfiI GAWTC 2 cut(s) 419, 794
Tru1I TTAA 4 cut(s) 138, 318, 354, 396
Tru9I TTAA 4 cut(s) 138, 318, 354, 396
TseI GCWGC 4 cut(s) 5, 8, 46, 299
TspDTI ATGAA 2 cut(s) 186, 260
TspGWI ACGGA 2 cut(s) 30, 360
Van91I CCANNNNNTGG 1 cut(s) 540
Vha464I CTTAAG 1 cut(s) 395
VpaK11BI GGWCC 2 cut(s) 92, 506
XapI RAATTY 2 cut(s) 466, 730
XceI RCATGY 1 cut(s) 461
XcmI CCANNNNNNNNNTGG 1 cut(s) 211
XhoI CTCGAG 1 cut(s) 782
XmnI GAANNNNTTC 1 cut(s) 284
XspI CTAG 2 cut(s) 578, 707
Zsp2I ATGCAT 1 cut(s) 722
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.