Rh2DG398100

post-illumination chlorophyll fluorescence increase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0008492
Physical Location & Seq
Reverse (-)
57903706 .. 57909015
5310 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG398100.1

Sequence Viewer

Length: 846 bp
ATGGCAGCAACAAATGGGTCAATCTTTGCGTCTTCCACCAAACCATTTCAGACCACACCGTCCATTTTCAGCAGCATAGCAAGTCCAGCTTCAAACACATTTGGTAGCAGTTTTAAGGGTTCTTCATTGCCGAAATGCCCTTTAAAATTGAAGAAAGTTGTCAAAAGCAGTGGAAAAGTTTGTGCCGCTGCAACAGCTGTTGCAACAACTCCAGTAGAGGAAGCCAAAGAGTTCACACTTCCCTCATGGGCCATGTTTGAACTTGGAAGGGCCCCTGTATATTGGAAAACCATGAACGGTCTTCCTCCTACGGCTGGAGAAAAGCTAAGGATTTTCTACAATCCAGCTGCAACGAATCTTGTTCCAAATAAAGAATACGGGGTTGCCTTCAATGGAGGTTTTAATCAACCTATAATGTGTGGTGGTGAGCCAAGGGCAATGCTTAGAAAAAATCGAGGCAAAGCTGATTCCCCAATATATTCCATCCAAATTTGCATTCCGAAGCATGCTCTGAACTTAATTTTTTCATTTACAAATGGAGATGAATGGGATGGTCCTTACAGATTACAATTTCAAGTTCCCAAGGGTTTCAAAAACAAACCAATTGAATTCTTCAACGAGGGACTAGCCGAAGAGCTGAGTAAAGATGGTGCTTGCGAAAGAGCAATCTTTCCTGATTCGAGCATTGTTGTGAATAGATGTACCATCATGGGAAATTTGACCGTTGAAGGAGGTGATCGTTGCAACCTTGATCTCAGACTGGGATGCACAGATCCCAGCTCACCTCTTTATGACCCGAATGCCAATGTAGACGATGGAACATGCCCAATGGATCTGGATTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

281

Amino Acids

30.33

Weight (kDa)

8.02

Isoelectric Point (pI)

35.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ig_PIFI PF25419 84 - 213 3e-73 PIFI-like, immunoglobulin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 58
AccI GTMKAC 1 cut(s) 810
AciI CCGC 1 cut(s) 186
AclWI GGATC 2 cut(s) 767, 840
AcsI RAATTY 3 cut(s) 489, 608, 715
AfaI GTAC 1 cut(s) 703
AfiI CCNNNNNNNGG 1 cut(s) 314
AgsI TTSAA 9 cut(s) 93, 151, 260, 391, 575, 592, 608, 616, 728
AjuI GAANNNNNNNTTGG 2 cut(s) 480, 512
AluBI AGCT 7 cut(s) 89, 197, 325, 347, 464, 637, 780
AluI AGCT 7 cut(s) 89, 197, 325, 347, 464, 637, 780
AlwI GGATC 2 cut(s) 767, 840
AoxI GGCC 2 cut(s) 249, 270
ApaI GGGCCC 1 cut(s) 274
ApeKI GCWGC 4 cut(s) 5, 72, 188, 347
ApoI RAATTY 3 cut(s) 489, 608, 715
AspS9I GGNCC 4 cut(s) 249, 270, 271, 554
AsuHPI GGTGA 3 cut(s) 437, 746, 774
AvaII GGWCC 1 cut(s) 554
BaeGI GKGCMC 1 cut(s) 274
BanII GRGCYC 1 cut(s) 274
BbsI GAAGAC 2 cut(s) 24, 293
BbvI GCAGC 4 cut(s) 17, 84, 175, 334
BccI CCATC 5 cut(s) 491, 545, 641, 713, 809
BceAI ACGGC 1 cut(s) 327
BfaI CTAG 1 cut(s) 626
BisI GCNGC 5 cut(s) 6, 73, 186, 189, 348
BlsI GCNGC 5 cut(s) 7, 74, 187, 190, 349
Bme18I GGWCC 1 cut(s) 554
BmgT120I GGNCC 4 cut(s) 249, 270, 271, 554
BmiI GGNNCC 2 cut(s) 272, 273
BmrI ACTGGG 1 cut(s) 770
BmsI GCATC 1 cut(s) 755
BmuI ACTGGG 1 cut(s) 770
BpiI GAAGAC 2 cut(s) 24, 293
BpmI CTGGAG 2 cut(s) 195, 336
Bpu10I CCTNAGC 1 cut(s) 326
BsaJI CCNNGG 2 cut(s) 431, 582
Bsc4I CCNNNNNNNGG 1 cut(s) 314
Bse1I ACTGG 2 cut(s) 212, 765
Bse3DI GCAATG 2 cut(s) 125, 444
BseDI CCNNGG 2 cut(s) 431, 582
BseGI GGATG 3 cut(s) 483, 556, 770
BseLI CCNNNNNNNGG 1 cut(s) 314
BseMI GCAATG 2 cut(s) 125, 444
BseMII CTCAG 2 cut(s) 629, 769
BseNI ACTGG 2 cut(s) 212, 765
BseSI GKGCMC 1 cut(s) 274
BseXI GCAGC 4 cut(s) 17, 84, 175, 334
BseYI CCCAGC 1 cut(s) 776
BshFI GGCC 2 cut(s) 251, 272
BslFI GGGAC 1 cut(s) 636
BslI CCNNNNNNNGG 1 cut(s) 314
BsmFI GGGAC 1 cut(s) 636
BsmI GAATGC 2 cut(s) 495, 805
BsnI GGCC 2 cut(s) 251, 272
Bsp120I GGGCCC 1 cut(s) 270
Bsp1286I GDGCHC 1 cut(s) 274
Bsp143I GATC 4 cut(s) 736, 751, 772, 832
BspACI CCGC 1 cut(s) 186
BspANI GGCC 2 cut(s) 251, 272
BspCNI CTCAG 2 cut(s) 630, 768
BspLI GGNNCC 2 cut(s) 272, 273
BspPI GGATC 2 cut(s) 767, 840
BspQI GCTCTTC 1 cut(s) 627
BsrDI GCAATG 2 cut(s) 125, 444
BsrI ACTGG 2 cut(s) 212, 765
BssECI CCNNGG 2 cut(s) 431, 582
BssMI GATC 4 cut(s) 736, 751, 772, 832
BssT1I CCWWGG 2 cut(s) 431, 582
Bst4CI ACNGT 3 cut(s) 60, 299, 724
Bst6I CTCTTC 1 cut(s) 627
BstC8I GCNNGC 2 cut(s) 507, 655
BstDEI CTNAG 5 cut(s) 326, 443, 638, 755, 843
BstF5I GGATG 3 cut(s) 483, 556, 770
BstKTI GATC 4 cut(s) 739, 754, 775, 835
BstMBI GATC 4 cut(s) 736, 751, 772, 832
BstMWI GCNNNNNNNGC 2 cut(s) 86, 194
BstNSI RCATGY 2 cut(s) 509, 825
BstSLI GKGCMC 1 cut(s) 274
BstV1I GCAGC 4 cut(s) 17, 84, 175, 334
BstV2I GAAGAC 2 cut(s) 24, 293
BstX2I RGATCY 2 cut(s) 772, 832
BstYI RGATCY 2 cut(s) 772, 832
BsuRI GGCC 2 cut(s) 251, 272
BtsCI GGATG 3 cut(s) 483, 556, 770
BtsI GCAGTG 1 cut(s) 175
BtsIMutI CAGTG 1 cut(s) 175
Cac8I GCNNGC 2 cut(s) 507, 655
Cfr13I GGNCC 4 cut(s) 249, 270, 271, 554
CseI GACGC 1 cut(s) 18
Csp6I GTAC 1 cut(s) 702
CspCI CAANNNNNGTGG 2 cut(s) 151, 186
CviAII CATG 6 cut(s) 246, 253, 292, 506, 709, 822
CviQI GTAC 1 cut(s) 702
DdeI CTNAG 5 cut(s) 326, 443, 638, 755, 843
DpnI GATC 4 cut(s) 738, 753, 774, 834
DpnII GATC 4 cut(s) 736, 751, 772, 832
DraI TTTAAA 1 cut(s) 144
DrdI GACNNNNNNGTC 1 cut(s) 58
DseDI GACNNNNNNGTC 1 cut(s) 58
Eam1104I CTCTTC 1 cut(s) 627
EarI CTCTTC 1 cut(s) 627
Eco130I CCWWGG 2 cut(s) 431, 582
Eco24I GRGCYC 1 cut(s) 274
Eco47I GGWCC 1 cut(s) 554
EcoO109I RGGNCCY 2 cut(s) 270, 271
EcoRI GAATTC 1 cut(s) 608
EcoT14I CCWWGG 2 cut(s) 431, 582
EcoT38I GRGCYC 1 cut(s) 274
ErhI CCWWGG 2 cut(s) 431, 582
FaeI CATG 6 cut(s) 249, 256, 295, 509, 712, 825
FalI AAGNNNNNCTT 2 cut(s) 73, 105
FaqI GGGAC 1 cut(s) 636
FatI CATG 6 cut(s) 245, 252, 291, 505, 708, 821
FblI GTMKAC 1 cut(s) 810
Fnu4HI GCNGC 5 cut(s) 6, 73, 186, 189, 348
FokI GGATG 3 cut(s) 470, 563, 777
FriOI GRGCYC 1 cut(s) 274
Fsp4HI GCNGC 5 cut(s) 6, 73, 186, 189, 348
FspBI CTAG 1 cut(s) 626
GluI GCNGC 5 cut(s) 6, 73, 186, 189, 348
GsaI CCCAGC 1 cut(s) 780
GsuI CTGGAG 2 cut(s) 195, 336
HaeIII GGCC 2 cut(s) 251, 272
HgaI GACGC 1 cut(s) 18
Hin1II CATG 6 cut(s) 249, 256, 295, 509, 712, 825
HinfI GANTC 4 cut(s) 355, 467, 677, 839
HphI GGTGA 3 cut(s) 437, 746, 774
Hpy166II GTNNAC 2 cut(s) 234, 811
Hpy188I TCNGA 4 cut(s) 51, 501, 513, 758
Hpy188III TCNNGA 2 cut(s) 674, 836
Hpy8I GTNNAC 2 cut(s) 234, 811
HpyAV CCTTC 3 cut(s) 261, 397, 722
HpyCH4III ACNGT 3 cut(s) 60, 299, 724
HpyCH4V TGCA 6 cut(s) 191, 203, 350, 495, 744, 768
HpyF10VI GCNNNNNNNGC 2 cut(s) 86, 194
HpyF3I CTNAG 5 cut(s) 326, 443, 638, 755, 843
Hsp92II CATG 6 cut(s) 249, 256, 295, 509, 712, 825
Kzo9I GATC 4 cut(s) 736, 751, 772, 832
LguI GCTCTTC 1 cut(s) 627
LpnPI CCDG 9 cut(s) 99, 225, 288, 300, 357, 687, 746, 790, 821
Lsp1109I GCAGC 4 cut(s) 17, 84, 175, 334
LweI GCATC 1 cut(s) 755
MaeI CTAG 1 cut(s) 626
MalI GATC 4 cut(s) 738, 753, 774, 834
MboI GATC 4 cut(s) 736, 751, 772, 832
MboII GAAGA 6 cut(s) 24, 114, 163, 293, 604, 644
MfeI CAATTG 1 cut(s) 603
MflI RGATCY 2 cut(s) 772, 832
MhlI GDGCHC 1 cut(s) 274
MluCI AATT 7 cut(s) 146, 489, 519, 569, 603, 608, 715
MnlI CCTC 8 cut(s) 211, 253, 315, 389, 449, 613, 725, 795
MseI TTAA 4 cut(s) 114, 143, 402, 518
MslI CAYNNNNRTG 1 cut(s) 689
MspA1I CMGCKG 3 cut(s) 188, 197, 347
MunI CAATTG 1 cut(s) 603
Mva1269I GAATGC 2 cut(s) 495, 805
MwoI GCNNNNNNNGC 2 cut(s) 86, 194
NdeII GATC 4 cut(s) 736, 751, 772, 832
NlaIII CATG 6 cut(s) 249, 256, 295, 509, 712, 825
NlaIV GGNNCC 2 cut(s) 272, 273
NspI RCATGY 2 cut(s) 509, 825
PaeI GCATGC 1 cut(s) 509
PciSI GCTCTTC 1 cut(s) 627
PctI GAATGC 2 cut(s) 495, 805
PfeI GAWTC 4 cut(s) 355, 467, 677, 839
PkrI GCNGC 5 cut(s) 7, 74, 187, 190, 349
PspFI CCCAGC 1 cut(s) 776
PspN4I GGNNCC 2 cut(s) 272, 273
PspOMI GGGCCC 1 cut(s) 270
PspPI GGNCC 4 cut(s) 249, 270, 271, 554
PsuI RGATCY 2 cut(s) 772, 832
PvuII CAGCTG 2 cut(s) 197, 347
RsaI GTAC 1 cut(s) 703
RsaNI GTAC 1 cut(s) 702
RseI CAYNNNNRTG 1 cut(s) 689
SapI GCTCTTC 1 cut(s) 627
SaqAI TTAA 4 cut(s) 114, 143, 402, 518
SatI GCNGC 5 cut(s) 6, 73, 186, 189, 348
Sau3AI GATC 4 cut(s) 736, 751, 772, 832
Sau96I GGNCC 4 cut(s) 249, 270, 271, 554
SduI GDGCHC 1 cut(s) 274
SfaNI GCATC 1 cut(s) 755
SinI GGWCC 1 cut(s) 554
SmiMI CAYNNNNRTG 1 cut(s) 689
SphI GCATGC 1 cut(s) 509
Sse9I AATT 7 cut(s) 146, 489, 519, 569, 603, 608, 715
SsiI CCGC 1 cut(s) 186
SspMI CTAG 1 cut(s) 626
StyI CCWWGG 2 cut(s) 431, 582
TaaI ACNGT 3 cut(s) 60, 299, 724
TaqI TCGA 2 cut(s) 454, 680
TasI AATT 7 cut(s) 146, 489, 519, 569, 603, 608, 715
TauI GCSGC 1 cut(s) 188
TfiI GAWTC 4 cut(s) 355, 467, 677, 839
Tru1I TTAA 4 cut(s) 114, 143, 402, 518
Tru9I TTAA 4 cut(s) 114, 143, 402, 518
TscAI CASTG 1 cut(s) 175
TseI GCWGC 4 cut(s) 5, 72, 188, 347
TspDTI ATGAA 4 cut(s) 114, 308, 516, 558
TspRI CASTG 1 cut(s) 175
VpaK11BI GGWCC 1 cut(s) 554
XapI RAATTY 3 cut(s) 489, 608, 715
XceI RCATGY 2 cut(s) 509, 825
XmiI GTMKAC 1 cut(s) 810
XspI CTAG 1 cut(s) 626
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.