Rh2CG360400

post-illumination chlorophyll fluorescence increase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0008492
Physical Location & Seq
Reverse (-)
48737988 .. 48741904
3917 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG360400.1

Sequence Viewer

Length: 699 bp
ATGGCAGCAACAAATGGGTCAATCTTTGCGTCTTCCACCAAACCATTTCAGACCACACCGTCCATTTTCAGCAGCATAGCAAGTCCAGCTTCAAACACACTTGGTAGCAGTTTTAAGGGTTCTTCATTGCCGAAATGCCCTTTAAAATTGAAGAAAGTTGTCAAAAGCAGTGGAAAAGTTTGTGCCGCTGCAACATCTGTTGCAACAACTCCAGTAGAGGAAGCCAAAGAGTTCACACTTCCCTCATGGGCCATGTTTGAACTTGGAAGGGCCCCTGTATATTGGAAAACCATGAACGGTCTTCCTCCTACGGCTGGAGAAAAGCTAAGGATTTTCTACAATCCAGCTGCAACGAATCTTGTTCCAAATAAAGAATACGGGGTTGCCTTCAATGTTCAATTCCTTGACCTGTATGTATTCTCCACAGGAGGTTTTAATCAACCTATAATGTGTGGTGGTGAGCCAAGGGCAATGCTTAGAAAAAATCGAGGCAAAGCTGATTCCCCAATATATTCCATCCAAATTTGCATTCCGAAGCATGCTCTGAACTTAATTTTTTCATTTACAAATGGAGATGAATGGGATGGTCCTTACAGATTACAATTTCAAGTTCCTAAGGGTTTCAAAAACAAACCAATTGAATTCTTCAACGAGGTAAAAGGACATTCAGTCAGCATTTTCAATCTATTACCCCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

232

Amino Acids

25.31

Weight (kDa)

9.57

Isoelectric Point (pI)

27.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ig_PIFI PF25419 84 - 220 2.5e-66 PIFI-like, immunoglobulin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 58
AciI CCGC 1 cut(s) 186
AcsI RAATTY 2 cut(s) 522, 641
AfiI CCNNNNNNNGG 1 cut(s) 314
AhdI GACNNNNNGTC 1 cut(s) 668
AjuI GAANNNNNNNTTGG 2 cut(s) 513, 545
AluBI AGCT 4 cut(s) 89, 325, 347, 497
AluI AGCT 4 cut(s) 89, 325, 347, 497
AoxI GGCC 2 cut(s) 249, 270
ApaI GGGCCC 1 cut(s) 274
ApeKI GCWGC 4 cut(s) 5, 72, 188, 347
ApoI RAATTY 2 cut(s) 522, 641
AspS9I GGNCC 4 cut(s) 249, 270, 271, 587
AsuHPI GGTGA 1 cut(s) 470
AvaII GGWCC 1 cut(s) 587
AxyI CCTNAGG 1 cut(s) 615
BaeGI GKGCMC 1 cut(s) 274
BanII GRGCYC 1 cut(s) 274
BbsI GAAGAC 2 cut(s) 24, 293
BbvI GCAGC 4 cut(s) 17, 84, 175, 334
BccI CCATC 2 cut(s) 524, 578
BceAI ACGGC 1 cut(s) 327
BisI GCNGC 5 cut(s) 6, 73, 186, 189, 348
BlsI GCNGC 5 cut(s) 7, 74, 187, 190, 349
Bme18I GGWCC 1 cut(s) 587
BmeRI GACNNNNNGTC 1 cut(s) 668
BmgT120I GGNCC 4 cut(s) 249, 270, 271, 587
BmiI GGNNCC 2 cut(s) 272, 273
BpiI GAAGAC 2 cut(s) 24, 293
BpmI CTGGAG 2 cut(s) 195, 336
Bpu10I CCTNAGC 1 cut(s) 326
BsaJI CCNNGG 1 cut(s) 464
Bsc4I CCNNNNNNNGG 1 cut(s) 314
Bse1I ACTGG 1 cut(s) 212
Bse21I CCTNAGG 1 cut(s) 615
Bse3DI GCAATG 2 cut(s) 125, 477
BseDI CCNNGG 1 cut(s) 464
BseGI GGATG 2 cut(s) 516, 589
BseLI CCNNNNNNNGG 1 cut(s) 314
BseMI GCAATG 2 cut(s) 125, 477
BseNI ACTGG 1 cut(s) 212
BseSI GKGCMC 1 cut(s) 274
BseXI GCAGC 4 cut(s) 17, 84, 175, 334
BshFI GGCC 2 cut(s) 251, 272
BslI CCNNNNNNNGG 1 cut(s) 314
BsmI GAATGC 1 cut(s) 528
BsnI GGCC 2 cut(s) 251, 272
Bsp120I GGGCCC 1 cut(s) 270
Bsp1286I GDGCHC 1 cut(s) 274
BspACI CCGC 1 cut(s) 186
BspANI GGCC 2 cut(s) 251, 272
BspLI GGNNCC 2 cut(s) 272, 273
BsrDI GCAATG 2 cut(s) 125, 477
BsrI ACTGG 1 cut(s) 212
BssECI CCNNGG 1 cut(s) 464
BssT1I CCWWGG 1 cut(s) 464
Bst4CI ACNGT 2 cut(s) 60, 299
BstC8I GCNNGC 1 cut(s) 540
BstDEI CTNAG 3 cut(s) 326, 476, 615
BstF5I GGATG 2 cut(s) 516, 589
BstMWI GCNNNNNNNGC 1 cut(s) 86
BstNSI RCATGY 1 cut(s) 542
BstSLI GKGCMC 1 cut(s) 274
BstV1I GCAGC 4 cut(s) 17, 84, 175, 334
BstV2I GAAGAC 2 cut(s) 24, 293
Bsu36I CCTNAGG 1 cut(s) 615
BsuRI GGCC 2 cut(s) 251, 272
BtsCI GGATG 2 cut(s) 516, 589
BtsI GCAGTG 1 cut(s) 175
BtsIMutI CAGTG 1 cut(s) 175
Cac8I GCNNGC 1 cut(s) 540
Cfr13I GGNCC 4 cut(s) 249, 270, 271, 587
CseI GACGC 1 cut(s) 18
CspCI CAANNNNNGTGG 2 cut(s) 151, 186
CviAII CATG 4 cut(s) 246, 253, 292, 539
CviJI RGCY 9 cut(s) 89, 224, 251, 272, 314, 325, 347, 463, 497
CviKI_1 RGCY 9 cut(s) 89, 224, 251, 272, 314, 325, 347, 463, 497
DdeI CTNAG 3 cut(s) 326, 476, 615
DraI TTTAAA 1 cut(s) 144
DrdI GACNNNNNNGTC 1 cut(s) 58
DriI GACNNNNNGTC 1 cut(s) 668
DseDI GACNNNNNNGTC 1 cut(s) 58
Eam1105I GACNNNNNGTC 1 cut(s) 668
Eco130I CCWWGG 1 cut(s) 464
Eco24I GRGCYC 1 cut(s) 274
Eco47I GGWCC 1 cut(s) 587
Eco81I CCTNAGG 1 cut(s) 615
EcoO109I RGGNCCY 2 cut(s) 270, 271
EcoRI GAATTC 1 cut(s) 641
EcoT14I CCWWGG 1 cut(s) 464
EcoT38I GRGCYC 1 cut(s) 274
ErhI CCWWGG 1 cut(s) 464
FaeI CATG 4 cut(s) 249, 256, 295, 542
FaiI YATR 9 cut(s) 77, 247, 254, 280, 293, 414, 446, 511, 540
FalI AAGNNNNNCTT 2 cut(s) 73, 105
FatI CATG 4 cut(s) 245, 252, 291, 538
Fnu4HI GCNGC 5 cut(s) 6, 73, 186, 189, 348
FokI GGATG 2 cut(s) 503, 596
FriOI GRGCYC 1 cut(s) 274
Fsp4HI GCNGC 5 cut(s) 6, 73, 186, 189, 348
GluI GCNGC 5 cut(s) 6, 73, 186, 189, 348
GsuI CTGGAG 2 cut(s) 195, 336
HaeIII GGCC 2 cut(s) 251, 272
HgaI GACGC 1 cut(s) 18
Hin1II CATG 4 cut(s) 249, 256, 295, 542
HinfI GANTC 2 cut(s) 355, 500
HphI GGTGA 1 cut(s) 470
Hpy166II GTNNAC 1 cut(s) 234
Hpy188I TCNGA 3 cut(s) 51, 534, 546
Hpy8I GTNNAC 1 cut(s) 234
HpyAV CCTTC 2 cut(s) 261, 397
HpyCH4III ACNGT 2 cut(s) 60, 299
HpyCH4V TGCA 4 cut(s) 191, 203, 350, 528
HpyF10VI GCNNNNNNNGC 1 cut(s) 86
HpyF3I CTNAG 3 cut(s) 326, 476, 615
Hsp92II CATG 4 cut(s) 249, 256, 295, 542
LpnPI CCDG 7 cut(s) 99, 225, 288, 300, 357, 411, 422
Lsp1109I GCAGC 4 cut(s) 17, 84, 175, 334
MboII GAAGA 5 cut(s) 24, 114, 163, 293, 637
MfeI CAATTG 1 cut(s) 636
MhlI GDGCHC 1 cut(s) 274
MluCI AATT 7 cut(s) 146, 398, 522, 552, 602, 636, 641
MnlI CCTC 6 cut(s) 211, 253, 315, 422, 482, 646
MseI TTAA 4 cut(s) 114, 143, 435, 551
MspA1I CMGCKG 2 cut(s) 188, 347
MunI CAATTG 1 cut(s) 636
Mva1269I GAATGC 1 cut(s) 528
MwoI GCNNNNNNNGC 1 cut(s) 86
NlaIII CATG 4 cut(s) 249, 256, 295, 542
NlaIV GGNNCC 2 cut(s) 272, 273
NspI RCATGY 1 cut(s) 542
PaeI GCATGC 1 cut(s) 542
PctI GAATGC 1 cut(s) 528
PfeI GAWTC 2 cut(s) 355, 500
PkrI GCNGC 5 cut(s) 7, 74, 187, 190, 349
PspN4I GGNNCC 2 cut(s) 272, 273
PspOMI GGGCCC 1 cut(s) 270
PspPI GGNCC 4 cut(s) 249, 270, 271, 587
PvuII CAGCTG 1 cut(s) 347
SaqAI TTAA 4 cut(s) 114, 143, 435, 551
SatI GCNGC 5 cut(s) 6, 73, 186, 189, 348
Sau96I GGNCC 4 cut(s) 249, 270, 271, 587
SduI GDGCHC 1 cut(s) 274
SetI ASST 8 cut(s) 91, 327, 349, 411, 433, 445, 499, 657
SinI GGWCC 1 cut(s) 587
SphI GCATGC 1 cut(s) 542
Sse9I AATT 7 cut(s) 146, 398, 522, 552, 602, 636, 641
SsiI CCGC 1 cut(s) 186
StyI CCWWGG 1 cut(s) 464
TaaI ACNGT 2 cut(s) 60, 299
TaqI TCGA 1 cut(s) 487
TasI AATT 7 cut(s) 146, 398, 522, 552, 602, 636, 641
TauI GCSGC 1 cut(s) 188
TfiI GAWTC 2 cut(s) 355, 500
Tru1I TTAA 4 cut(s) 114, 143, 435, 551
Tru9I TTAA 4 cut(s) 114, 143, 435, 551
TscAI CASTG 1 cut(s) 175
TseI GCWGC 4 cut(s) 5, 72, 188, 347
TspDTI ATGAA 4 cut(s) 114, 308, 549, 591
TspRI CASTG 1 cut(s) 175
VpaK11BI GGWCC 1 cut(s) 587
XapI RAATTY 2 cut(s) 522, 641
XceI RCATGY 1 cut(s) 542
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.