Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0008492

Physical Location & Seq

Genomic Coordinates Forward (+)

20156130 .. 20160013

Gene Structure 3884 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g21700.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGCTGCAGCAACAAAATCTTCGATCTTTGTGGCGTCCACACAACATCTTCCTACCATACCGTCCATTTTTGGTAGCAAAGCAAGCCCACCTGTTTCAAACACTCTTGCTAGCAGTTTTCGGGGTTCATCGTTGGCGAGGTGTCCTTCGATAAGGAAGAAAGTTGTGAAGGGCAATGCGAAAGTCAGTGCTGCTGCAACAACTTTTGCACCAACTCCTGTAGAGGAACCCAAAGAGTTCTCACTACCCTCATGGGCTATGTTTGAACTTGGGAGAGCTCCTGTGTATTGGAAAACCGTGAACGGTCTTCCTCCTACCGCTGGAGAAAAGCTAAGGATTTTCTACAACCCAGCTGCGAATAAAATTATCCCAAATGAAGAATATGGGATTGCATTTAATGGAGGTTTTAATCAGCCTATAATGTGCGGCGGTGAGCCAAGGGCAATGCTTAGTATAAACCGAGGCAAAGCCGATTCCCCAATGTATTCCATCCAAATATGTATTCCCCGGCATGCCCTGAACTTAATCTTTTCGTTTACAAACGGAGTTGATTGGGATGGTCCTTACAGACTACAATTTCAAGTTCCCAACGGTTTGAAGAACAAACCGATTGAATTCTTTAACGAGGGACTAGCAGAAGAGTTGAGTAAAGACGGTGCATGTGAGAGAGCAATCTTTCCTGATACGTTTGTTGTCGTAACAAGATGCAATATGATTGGGAATTTGACAGTTGAAGGAGGCGATCGTTGCAACCTTAATCTCGTACCAGGATGCACAGATCCCAGTTCACCATCCTACGACCCGCTTGCCAATGTGGACGATCGATCATGCCCAATGGAGCTAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

283

Amino Acids

30.54

Weight (kDa)

7.51

Isoelectric Point (pI)

39.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008492)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15840 AT3G15840 AT3G15840 AT3G15840 AT3G15840
fragaria_vesca	FvH4_6g29710
malus_domestica	MD17G1212100.v1.1
prunus_persica	Prupe.3G087300_v2.0.a1 Prupe.3G087300_v2.0.a1 Prupe.3G087300_v2.0.a1 Prupe.3G087300_v2.0.a1 Prupe.3G087300_v2.0.a1
pyrus_communis	pycom17g21700
rosa_chinensis	RchiOBHm_Chr2g0135411
rosa_laevigata	RLG00000019461
rosa_multiflora	Rmu_ssc0000187.1_g000018
rosa_roxburghii	Rroxscaffold_2G00109270
rosa_rugosa	Rorug02G0324700
rosa_samantha	Rh2AG370300 Rh2BG381800 Rh2CG360400 Rh2DG398100
rosa_wichuraiana	Rw2G030660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	318, 426, 429, 803
AclWI	GGATC	1 cut(s)	773
AcsI	RAATTY	2 cut(s)	614, 721
AcyI	GRCGYC	1 cut(s)	35
AfaI	GTAC	1 cut(s)	765
AfiI	CCNNNNNNNGG	1 cut(s)	320
AgsI	TTSAA	6 cut(s)	99, 266, 581, 598, 614, 734
AjnI	CCWGG	1 cut(s)	766
AjuI	GAANNNNNNNTTGG	2 cut(s)	486, 518
AluBI	AGCT	4 cut(s)	278, 331, 353, 841
AluI	AGCT	4 cut(s)	278, 331, 353, 841
Alw21I	GWGCWC	1 cut(s)	280
AlwI	GGATC	1 cut(s)	773
ApeKI	GCWGC	5 cut(s)	5, 8, 191, 194, 353
ApoI	RAATTY	2 cut(s)	614, 721
AspS9I	GGNCC	1 cut(s)	560
AsuC2I	CCSGG	1 cut(s)	508
AsuHPI	GGTGA	2 cut(s)	443, 780
AsuNHI	GCTAGC	1 cut(s)	110
AvaII	GGWCC	1 cut(s)	560
BaeI	ACNNNNGTAYC	2 cut(s)	675, 708
BanII	GRGCYC	1 cut(s)	280
BbsI	GAAGAC	1 cut(s)	299
Bbv12I	GWGCWC	1 cut(s)	280
BbvI	GCAGC	4 cut(s)	20, 178, 181, 340
BccI	CCATC	3 cut(s)	497, 551, 799
BcgI	CGANNNNNNTGC	2 cut(s)	788, 822
BciT130I	CCWGG	1 cut(s)	768
BcnI	CCSGG	1 cut(s)	508
BfaI	CTAG	3 cut(s)	111, 632, 842
BfmI	CTRYAG	2 cut(s)	6, 219
BisI	GCNGC	6 cut(s)	6, 9, 192, 195, 354, 427
BlsI	GCNGC	6 cut(s)	7, 10, 193, 196, 355, 428
Bme1390I	CCNGG	2 cut(s)	508, 768
Bme18I	GGWCC	1 cut(s)	560
BmgT120I	GGNCC	1 cut(s)	560
BmiI	GGNNCC	1 cut(s)	228
BmrFI	CCNGG	2 cut(s)	508, 768
BmrI	ACTGGG	1 cut(s)	777
BmsI	GCATC	2 cut(s)	695, 761
BmtI	GCTAGC	1 cut(s)	114
BmuI	ACTGGG	1 cut(s)	777
BpiI	GAAGAC	1 cut(s)	299
BpmI	CTGGAG	1 cut(s)	342
Bpu10I	CCTNAGC	1 cut(s)	332
BpuMI	CCSGG	1 cut(s)	508
Bsa29I	ATCGAT	1 cut(s)	823
BsaHI	GRCGYC	1 cut(s)	35
BsaJI	CCNNGG	3 cut(s)	437, 460, 506
BsaXI	ACNNNNNCTCC	1 cut(s)	830
Bsc4I	CCNNNNNNNGG	1 cut(s)	320
Bse1I	ACTGG	1 cut(s)	783
Bse3DI	GCAATG	2 cut(s)	181, 450
BseBI	CCWGG	1 cut(s)	768
BseCI	ATCGAT	1 cut(s)	823
BseDI	CCNNGG	3 cut(s)	437, 460, 506
BseGI	GGATG	4 cut(s)	489, 562, 776, 791
BseLI	CCNNNNNNNGG	1 cut(s)	320
BseMI	GCAATG	2 cut(s)	181, 450
BseNI	ACTGG	1 cut(s)	783
BseXI	GCAGC	4 cut(s)	20, 178, 181, 340
BseYI	CCCAGC	1 cut(s)	349
Bsh1285I	CGRYCG	2 cut(s)	745, 823
BshVI	ATCGAT	1 cut(s)	823
BsiEI	CGRYCG	2 cut(s)	745, 823
BsiHKAI	GWGCWC	1 cut(s)	280
BsiSI	CCGG	1 cut(s)	508
BslFI	GGGAC	1 cut(s)	642
BslI	CCNNNNNNNGG	1 cut(s)	320
BsmFI	GGGAC	1 cut(s)	642
Bsp1286I	GDGCHC	1 cut(s)	280
Bsp143I	GATC	5 cut(s)	24, 742, 778, 820, 824
BspACI	CCGC	4 cut(s)	318, 426, 429, 803
BspDI	ATCGAT	1 cut(s)	823
BspLI	GGNNCC	1 cut(s)	228
BspMAI	CTGCAG	1 cut(s)	10
BspOI	GCTAGC	1 cut(s)	114
BspPI	GGATC	1 cut(s)	773
BsrDI	GCAATG	2 cut(s)	181, 450
BsrI	ACTGG	1 cut(s)	783
BssECI	CCNNGG	3 cut(s)	437, 460, 506
BssMI	GATC	5 cut(s)	24, 742, 778, 820, 824
BssNI	GRCGYC	1 cut(s)	35
BssT1I	CCWWGG	1 cut(s)	437
Bst2UI	CCWGG	1 cut(s)	768
Bst4CI	ACNGT	6 cut(s)	63, 298, 305, 593, 656, 730
Bst6I	CTCTTC	1 cut(s)	633
BstACI	GRCGYC	1 cut(s)	35
BstC8I	GCNNGC	4 cut(s)	85, 112, 513, 807
BstDEI	CTNAG	2 cut(s)	332, 449
BstF5I	GGATG	4 cut(s)	489, 562, 776, 791
BstKTI	GATC	5 cut(s)	27, 745, 781, 823, 827
BstMBI	GATC	5 cut(s)	24, 742, 778, 820, 824
BstMCI	CGRYCG	2 cut(s)	745, 823
BstMWI	GCNNNNNNNGC	2 cut(s)	84, 747
BstNI	CCWGG	1 cut(s)	768
BstNSI	RCATGY	2 cut(s)	515, 663
BstSCI	CCNGG	2 cut(s)	506, 766
BstSFI	CTRYAG	2 cut(s)	6, 219
BstV1I	GCAGC	4 cut(s)	20, 178, 181, 340
BstV2I	GAAGAC	1 cut(s)	299
BstX2I	RGATCY	1 cut(s)	778
BstYI	RGATCY	1 cut(s)	778
Bsu15I	ATCGAT	1 cut(s)	823
BsuTUI	ATCGAT	1 cut(s)	823
BtsCI	GGATG	4 cut(s)	489, 562, 776, 791
BtsIMutI	CAGTG	1 cut(s)	193
Cac8I	GCNNGC	4 cut(s)	85, 112, 513, 807
Cfr13I	GGNCC	1 cut(s)	560
ClaI	ATCGAT	1 cut(s)	823
CseI	GACGC	1 cut(s)	24
Csp6I	GTAC	1 cut(s)	764
CviAII	CATG	4 cut(s)	252, 512, 660, 828
CviQI	GTAC	1 cut(s)	764
DdeI	CTNAG	2 cut(s)	332, 449
DpnI	GATC	5 cut(s)	26, 744, 780, 822, 826
DpnII	GATC	5 cut(s)	24, 742, 778, 820, 824
Eam1104I	CTCTTC	1 cut(s)	633
EarI	CTCTTC	1 cut(s)	633
Ecl136II	GAGCTC	1 cut(s)	278
Eco130I	CCWWGG	1 cut(s)	437
Eco24I	GRGCYC	1 cut(s)	280
Eco47I	GGWCC	1 cut(s)	560
Eco53kI	GAGCTC	1 cut(s)	278
EcoICRI	GAGCTC	1 cut(s)	278
EcoRI	GAATTC	1 cut(s)	614
EcoRII	CCWGG	1 cut(s)	766
EcoT14I	CCWWGG	1 cut(s)	437
EcoT38I	GRGCYC	1 cut(s)	280
ErhI	CCWWGG	1 cut(s)	437
FaeI	CATG	4 cut(s)	255, 515, 663, 831
FaqI	GGGAC	1 cut(s)	642
FatI	CATG	4 cut(s)	251, 511, 659, 827
FauI	CCCGC	1 cut(s)	810
Fnu4HI	GCNGC	6 cut(s)	6, 9, 192, 195, 354, 427
FokI	GGATG	4 cut(s)	476, 569, 778, 783
FriOI	GRGCYC	1 cut(s)	280
Fsp4HI	GCNGC	6 cut(s)	6, 9, 192, 195, 354, 427
FspBI	CTAG	3 cut(s)	111, 632, 842
GluI	GCNGC	6 cut(s)	6, 9, 192, 195, 354, 427
GsaI	CCCAGC	1 cut(s)	353
GsuI	CTGGAG	1 cut(s)	342
HapII	CCGG	1 cut(s)	508
HgaI	GACGC	1 cut(s)	24
Hin1I	GRCGYC	1 cut(s)	35
Hin1II	CATG	4 cut(s)	255, 515, 663, 831
HinfI	GANTC	1 cut(s)	473
HpaII	CCGG	1 cut(s)	508
HphI	GGTGA	2 cut(s)	443, 780
Hpy166II	GTNNAC	5 cut(s)	39, 301, 537, 788, 817
Hpy188III	TCNNGA	1 cut(s)	680
Hpy8I	GTNNAC	5 cut(s)	39, 301, 537, 788, 817
HpyAV	CCTTC	3 cut(s)	156, 163, 728
HpyCH4III	ACNGT	6 cut(s)	63, 298, 305, 593, 656, 730
HpyCH4IV	ACGT	1 cut(s)	686
HpyCH4V	TGCA	8 cut(s)	8, 197, 209, 392, 659, 708, 750, 774
HpyF10VI	GCNNNNNNNGC	2 cut(s)	84, 747
HpyF3I	CTNAG	2 cut(s)	332, 449
HpySE526I	ACGT	1 cut(s)	686
Hsp92I	GRCGYC	1 cut(s)	35
Hsp92II	CATG	4 cut(s)	255, 515, 663, 831
Kzo9I	GATC	5 cut(s)	24, 742, 778, 820, 824
LmnI	GCTCC	2 cut(s)	283, 838
Lsp1109I	GCAGC	4 cut(s)	20, 178, 181, 340
LweI	GCATC	2 cut(s)	695, 761
MaeI	CTAG	3 cut(s)	111, 632, 842
MaeII	ACGT	1 cut(s)	686
MaeIII	GTNAC	1 cut(s)	697
MalI	GATC	5 cut(s)	26, 744, 780, 822, 826
MboI	GATC	5 cut(s)	24, 742, 778, 820, 824
MboII	GAAGA	7 cut(s)	12, 41, 169, 299, 389, 610, 650
MflI	RGATCY	1 cut(s)	778
MhlI	GDGCHC	1 cut(s)	280
MluCI	AATT	4 cut(s)	363, 575, 614, 721
MnlI	CCTC	8 cut(s)	132, 217, 259, 321, 395, 455, 619, 731
MseI	TTAA	5 cut(s)	396, 408, 524, 621, 756
MspA1I	CMGCKG	2 cut(s)	320, 353
MspI	CCGG	1 cut(s)	508
MspR9I	CCNGG	2 cut(s)	508, 768
MvaI	CCWGG	1 cut(s)	768
MwoI	GCNNNNNNNGC	2 cut(s)	84, 747
NciI	CCSGG	1 cut(s)	508
NdeII	GATC	5 cut(s)	24, 742, 778, 820, 824
NheI	GCTAGC	1 cut(s)	110
NlaIII	CATG	4 cut(s)	255, 515, 663, 831
NlaIV	GGNNCC	1 cut(s)	228
NspI	RCATGY	2 cut(s)	515, 663
PaeI	GCATGC	1 cut(s)	515
PfeI	GAWTC	1 cut(s)	473
PkrI	GCNGC	6 cut(s)	7, 10, 193, 196, 355, 428
Ple19I	CGATCG	2 cut(s)	745, 823
Psp124BI	GAGCTC	1 cut(s)	280
Psp6I	CCWGG	1 cut(s)	766
PspFI	CCCAGC	1 cut(s)	349
PspGI	CCWGG	1 cut(s)	766
PspN4I	GGNNCC	1 cut(s)	228
PspPI	GGNCC	1 cut(s)	560
PstI	CTGCAG	1 cut(s)	10
PsuI	RGATCY	1 cut(s)	778
PvuI	CGATCG	2 cut(s)	745, 823
PvuII	CAGCTG	1 cut(s)	353
RsaI	GTAC	1 cut(s)	765
RsaNI	GTAC	1 cut(s)	764
SacI	GAGCTC	1 cut(s)	280
SaqAI	TTAA	5 cut(s)	396, 408, 524, 621, 756
SatI	GCNGC	6 cut(s)	6, 9, 192, 195, 354, 427
Sau3AI	GATC	5 cut(s)	24, 742, 778, 820, 824
Sau96I	GGNCC	1 cut(s)	560
ScrFI	CCNGG	2 cut(s)	508, 768
SduI	GDGCHC	1 cut(s)	280
SetI	ASST	9 cut(s)	94, 143, 280, 333, 355, 406, 689, 756, 843
SfaNI	GCATC	2 cut(s)	695, 761
SfcI	CTRYAG	2 cut(s)	6, 219
SinI	GGWCC	1 cut(s)	560
SphI	GCATGC	1 cut(s)	515
Sse9I	AATT	4 cut(s)	363, 575, 614, 721
SsiI	CCGC	4 cut(s)	318, 426, 429, 803
SspMI	CTAG	3 cut(s)	111, 632, 842
SstI	GAGCTC	1 cut(s)	280
StyD4I	CCNGG	2 cut(s)	506, 766
StyI	CCWWGG	1 cut(s)	437
TaaI	ACNGT	6 cut(s)	63, 298, 305, 593, 656, 730
TaiI	ACGT	1 cut(s)	689
TaqI	TCGA	3 cut(s)	23, 149, 823
TasI	AATT	4 cut(s)	363, 575, 614, 721
TauI	GCSGC	1 cut(s)	429
TfiI	GAWTC	1 cut(s)	473
Tru1I	TTAA	5 cut(s)	396, 408, 524, 621, 756
Tru9I	TTAA	5 cut(s)	396, 408, 524, 621, 756
TscAI	CASTG	1 cut(s)	193
TseI	GCWGC	5 cut(s)	5, 8, 191, 194, 353
TspDTI	ATGAA	2 cut(s)	117, 390
TspGWI	ACGGA	1 cut(s)	558
TspRI	CASTG	1 cut(s)	193
VpaK11BI	GGWCC	1 cut(s)	560
XapI	RAATTY	2 cut(s)	614, 721
XceI	RCATGY	2 cut(s)	515, 663
XspI	CTAG	3 cut(s)	111, 632, 842

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.