Prupe.3G087300_v2.0.a1

post-illumination chlorophyll fluorescence increase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0008492
Physical Location & Seq
Forward (+)
6470063 .. 6474355
4293 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G087300.5

Sequence Viewer

Length: 858 bp
ATGGCAGCAACAAAAGCGTCAATCTTTGCGTCTTCCACACAACCTTTTCCAACTACACCGTCCATTTTTGGAAGCAAAGCAAGCCCTCCTGTTTCAAACACTCTTGCTAGCAGTTTTAAGGGATTTTCATTGCCAAGGTGTCCTTCGATAAGGAAGCAAGTCGTCAAGCGCAATGGGAAAGTTAGTGCTGCTGCGGCTACAGTTGCAGTAACTCCTGTGGAGGAGCCCAAAGAGGTCACACTTCCATCATGGGCCATGTTTGAACTTGGGAGGGCACCTGTATATTGGAAAACCATGAACGGCCTTCCTCCTACAGCTGGAGAAAAGCTAAGGATTTTCTACAACCCAGCTGCAAATAATATTGTTCCAAATGAAGAATTTGGGATTGCATTTAATGGAGGTTTTAATCAGCCTATAATGTGTGGGGGTGAGCCAAGGGCAATGCTTAGTAAAAGTCGAGGCAAAGCTGATTCCCCAATATATTCCATTCAAATATGCATTCCCAGGCATGCCCTGAACTTAATCTTTTCATTTACAAATGGAGGTGATTGGGATGGTCCTTACAGGCTACAATTTCAAGTTCCTAAGGCTTTGAGAAACAAACCGATTGAAGTCTTTAATGAGGGATTAACAGAAGAGTTGAGCAAAGACGGCGCGTGTGAAAGAGCAATCTTTCCCGACACTAGCGTTGTCGTAACAAGATGCACTATGATTGGGAATTTGAATGTTGAAGGAGGCGATCGTTGCAACCTTAATCTCGTACTGGGATGCACAGATCCTAGTTCACCCTCCTACGATCCGCTTGCCAATGTAGATGATGGATCATGCCCAATTGAGCTAGATTCTGACTCTCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

286

Amino Acids

30.65

Weight (kDa)

6.61

Isoelectric Point (pI)

48.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 274
AccII CGCG 1 cut(s) 656
AciI CCGC 2 cut(s) 194, 800
AclWI GGATC 3 cut(s) 770, 791, 829
AcsI RAATTY 2 cut(s) 377, 718
AfaI GTAC 1 cut(s) 762
AfiI CCNNNNNNNGG 1 cut(s) 317
AgsI TTSAA 7 cut(s) 96, 263, 491, 578, 611, 724, 731
AjnI CCWGG 1 cut(s) 503
AjuI GAANNNNNNNTTGG 2 cut(s) 127, 159
AluBI AGCT 5 cut(s) 317, 328, 350, 467, 838
AluI AGCT 5 cut(s) 317, 328, 350, 467, 838
AlwI GGATC 3 cut(s) 770, 791, 829
AoxI GGCC 2 cut(s) 252, 301
ApeKI GCWGC 4 cut(s) 5, 188, 191, 350
ApoI RAATTY 2 cut(s) 377, 718
AspLEI GCGC 2 cut(s) 171, 656
AspS9I GGNCC 2 cut(s) 252, 557
AsuHPI GGTGA 3 cut(s) 440, 557, 777
AsuNHI GCTAGC 1 cut(s) 107
AvaII GGWCC 1 cut(s) 557
AxyI CCTNAGG 1 cut(s) 585
BaeGI GKGCMC 1 cut(s) 277
BanI GGYRCC 1 cut(s) 274
BanII GRGCYC 1 cut(s) 228
BbsI GAAGAC 1 cut(s) 24
BbvI GCAGC 4 cut(s) 17, 175, 178, 337
BccI CCATC 3 cut(s) 253, 548, 812
BceAI ACGGC 2 cut(s) 316, 667
BcgI CGANNNNNNTGC 2 cut(s) 785, 819
BciT130I CCWGG 1 cut(s) 505
BfaI CTAG 4 cut(s) 108, 684, 780, 839
BfmI CTRYAG 2 cut(s) 198, 312
BisI GCNGC 5 cut(s) 6, 189, 192, 195, 351
BlsI GCNGC 5 cut(s) 7, 190, 193, 196, 352
Bme1390I CCNGG 1 cut(s) 505
Bme18I GGWCC 1 cut(s) 557
BmgT120I GGNCC 2 cut(s) 252, 557
BmiI GGNNCC 2 cut(s) 225, 276
BmrFI CCNGG 1 cut(s) 505
BmrI ACTGGG 1 cut(s) 773
BmsI GCATC 2 cut(s) 692, 758
BmtI GCTAGC 1 cut(s) 111
BmuI ACTGGG 1 cut(s) 773
BpiI GAAGAC 1 cut(s) 24
BpmI CTGGAG 1 cut(s) 339
Bpu10I CCTNAGC 1 cut(s) 329
BsaJI CCNNGG 3 cut(s) 134, 434, 503
Bsc4I CCNNNNNNNGG 1 cut(s) 317
Bse1I ACTGG 1 cut(s) 768
Bse21I CCTNAGG 1 cut(s) 585
Bse3DI GCAATG 3 cut(s) 128, 178, 447
BseBI CCWGG 1 cut(s) 505
BseDI CCNNGG 3 cut(s) 134, 434, 503
BseGI GGATG 2 cut(s) 559, 773
BseLI CCNNNNNNNGG 1 cut(s) 317
BseMI GCAATG 3 cut(s) 128, 178, 447
BseNI ACTGG 1 cut(s) 768
BseRI GAGGAG 1 cut(s) 236
BseSI GKGCMC 1 cut(s) 277
BseXI GCAGC 4 cut(s) 17, 175, 178, 337
BseYI CCCAGC 1 cut(s) 346
Bsh1236I CGCG 1 cut(s) 656
Bsh1285I CGRYCG 1 cut(s) 742
BshFI GGCC 2 cut(s) 254, 303
BshNI GGYRCC 1 cut(s) 274
BsiEI CGRYCG 1 cut(s) 742
BslI CCNNNNNNNGG 1 cut(s) 317
BsmI GAATGC 1 cut(s) 498
BsnI GGCC 2 cut(s) 254, 303
Bsp1286I GDGCHC 2 cut(s) 228, 277
Bsp143I GATC 4 cut(s) 739, 775, 796, 821
BspACI CCGC 2 cut(s) 194, 800
BspANI GGCC 2 cut(s) 254, 303
BspFNI CGCG 1 cut(s) 656
BspLI GGNNCC 2 cut(s) 225, 276
BspOI GCTAGC 1 cut(s) 111
BspPI GGATC 3 cut(s) 770, 791, 829
BspT107I GGYRCC 1 cut(s) 274
BsrDI GCAATG 3 cut(s) 128, 178, 447
BsrI ACTGG 1 cut(s) 768
BssECI CCNNGG 3 cut(s) 134, 434, 503
BssMI GATC 4 cut(s) 739, 775, 796, 821
BssT1I CCWWGG 2 cut(s) 134, 434
Bst2UI CCWGG 1 cut(s) 505
Bst4CI ACNGT 2 cut(s) 60, 202
Bst6I CTCTTC 1 cut(s) 630
BstC8I GCNNGC 4 cut(s) 82, 109, 510, 804
BstDEI CTNAG 4 cut(s) 329, 446, 585, 852
BstF5I GGATG 2 cut(s) 559, 773
BstFNI CGCG 1 cut(s) 656
BstHHI GCGC 2 cut(s) 171, 656
BstKTI GATC 4 cut(s) 742, 778, 799, 824
BstMBI GATC 4 cut(s) 739, 775, 796, 821
BstMCI CGRYCG 1 cut(s) 742
BstMWI GCNNNNNNNGC 6 cut(s) 14, 81, 194, 203, 651, 744
BstNI CCWGG 1 cut(s) 505
BstNSI RCATGY 1 cut(s) 512
BstSCI CCNGG 1 cut(s) 503
BstSFI CTRYAG 2 cut(s) 198, 312
BstSLI GKGCMC 1 cut(s) 277
BstUI CGCG 1 cut(s) 656
BstV1I GCAGC 4 cut(s) 17, 175, 178, 337
BstV2I GAAGAC 1 cut(s) 24
BstX2I RGATCY 1 cut(s) 775
BstYI RGATCY 1 cut(s) 775
Bsu36I CCTNAGG 1 cut(s) 585
BsuRI GGCC 2 cut(s) 254, 303
BtsCI GGATG 2 cut(s) 559, 773
Cac8I GCNNGC 4 cut(s) 82, 109, 510, 804
CfoI GCGC 2 cut(s) 171, 656
Cfr13I GGNCC 2 cut(s) 252, 557
CseI GACGC 2 cut(s) 6, 18
Csp6I GTAC 1 cut(s) 761
CviAII CATG 5 cut(s) 249, 256, 295, 509, 825
CviQI GTAC 1 cut(s) 761
DdeI CTNAG 4 cut(s) 329, 446, 585, 852
DpnI GATC 4 cut(s) 741, 777, 798, 823
DpnII GATC 4 cut(s) 739, 775, 796, 821
Eam1104I CTCTTC 1 cut(s) 630
EarI CTCTTC 1 cut(s) 630
Eco130I CCWWGG 2 cut(s) 134, 434
Eco24I GRGCYC 1 cut(s) 228
Eco47I GGWCC 1 cut(s) 557
Eco81I CCTNAGG 1 cut(s) 585
EcoRII CCWGG 1 cut(s) 503
EcoT14I CCWWGG 2 cut(s) 134, 434
EcoT22I ATGCAT 1 cut(s) 500
EcoT38I GRGCYC 1 cut(s) 228
ErhI CCWWGG 2 cut(s) 134, 434
FaeI CATG 5 cut(s) 252, 259, 298, 512, 828
FalI AAGNNNNNCTT 2 cut(s) 127, 159
FatI CATG 5 cut(s) 248, 255, 294, 508, 824
Fnu4HI GCNGC 5 cut(s) 6, 189, 192, 195, 351
FokI GGATG 2 cut(s) 566, 780
FriOI GRGCYC 1 cut(s) 228
Fsp4HI GCNGC 5 cut(s) 6, 189, 192, 195, 351
FspBI CTAG 4 cut(s) 108, 684, 780, 839
GlaI GCGC 2 cut(s) 170, 655
GluI GCNGC 5 cut(s) 6, 189, 192, 195, 351
GsaI CCCAGC 1 cut(s) 350
GsuI CTGGAG 1 cut(s) 339
HaeIII GGCC 2 cut(s) 254, 303
HgaI GACGC 2 cut(s) 6, 18
HhaI GCGC 2 cut(s) 171, 656
Hin1II CATG 5 cut(s) 252, 259, 298, 512, 828
Hin6I GCGC 2 cut(s) 169, 654
HinP1I GCGC 2 cut(s) 169, 654
HinfI GANTC 3 cut(s) 470, 842, 848
HphI GGTGA 3 cut(s) 440, 557, 777
Hpy166II GTNNAC 1 cut(s) 785
Hpy188I TCNGA 1 cut(s) 847
Hpy188III TCNNGA 1 cut(s) 677
Hpy8I GTNNAC 1 cut(s) 785
HpyAV CCTTC 3 cut(s) 153, 314, 725
HpyCH4III ACNGT 2 cut(s) 60, 202
HpyCH4V TGCA 7 cut(s) 206, 353, 389, 498, 705, 747, 771
HpyF10VI GCNNNNNNNGC 6 cut(s) 14, 81, 194, 203, 651, 744
HpyF3I CTNAG 4 cut(s) 329, 446, 585, 852
Hsp92II CATG 5 cut(s) 252, 259, 298, 512, 828
HspAI GCGC 2 cut(s) 169, 654
Kzo9I GATC 4 cut(s) 739, 775, 796, 821
LmnI GCTCC 1 cut(s) 223
Lsp1109I GCAGC 4 cut(s) 17, 175, 178, 337
LweI GCATC 2 cut(s) 692, 758
MaeI CTAG 4 cut(s) 108, 684, 780, 839
MaeIII GTNAC 3 cut(s) 208, 235, 694
MalI GATC 4 cut(s) 741, 777, 798, 823
MboI GATC 4 cut(s) 739, 775, 796, 821
MboII GAAGA 3 cut(s) 24, 386, 647
MfeI CAATTG 1 cut(s) 831
MflI RGATCY 1 cut(s) 775
MhlI GDGCHC 2 cut(s) 228, 277
MluCI AATT 4 cut(s) 377, 572, 718, 831
MlyI GAGTC 1 cut(s) 842
MmeI TCCRAC 1 cut(s) 74
Mph1103I ATGCAT 1 cut(s) 500
MseI TTAA 7 cut(s) 117, 393, 405, 521, 618, 629, 753
MspA1I CMGCKG 2 cut(s) 317, 350
MspR9I CCNGG 1 cut(s) 505
MunI CAATTG 1 cut(s) 831
Mva1269I GAATGC 1 cut(s) 498
MvaI CCWGG 1 cut(s) 505
MvnI CGCG 1 cut(s) 656
MwoI GCNNNNNNNGC 6 cut(s) 14, 81, 194, 203, 651, 744
NdeII GATC 4 cut(s) 739, 775, 796, 821
NheI GCTAGC 1 cut(s) 107
NlaIII CATG 5 cut(s) 252, 259, 298, 512, 828
NlaIV GGNNCC 2 cut(s) 225, 276
NmuCI GTSAC 1 cut(s) 235
NsiI ATGCAT 1 cut(s) 500
NspI RCATGY 1 cut(s) 512
PaeI GCATGC 1 cut(s) 512
PctI GAATGC 1 cut(s) 498
PfeI GAWTC 2 cut(s) 470, 842
PkrI GCNGC 5 cut(s) 7, 190, 193, 196, 352
Ple19I CGATCG 1 cut(s) 742
PleI GAGTC 1 cut(s) 842
PpsI GAGTC 1 cut(s) 842
Psp6I CCWGG 1 cut(s) 503
PspFI CCCAGC 1 cut(s) 346
PspGI CCWGG 1 cut(s) 503
PspN4I GGNNCC 2 cut(s) 225, 276
PspPI GGNCC 2 cut(s) 252, 557
PsuI RGATCY 1 cut(s) 775
PvuI CGATCG 1 cut(s) 742
PvuII CAGCTG 2 cut(s) 317, 350
RsaI GTAC 1 cut(s) 762
RsaNI GTAC 1 cut(s) 761
SaqAI TTAA 7 cut(s) 117, 393, 405, 521, 618, 629, 753
SatI GCNGC 5 cut(s) 6, 189, 192, 195, 351
Sau3AI GATC 4 cut(s) 739, 775, 796, 821
Sau96I GGNCC 2 cut(s) 252, 557
SchI GAGTC 1 cut(s) 842
ScrFI CCNGG 1 cut(s) 505
SduI GDGCHC 2 cut(s) 228, 277
SfaNI GCATC 2 cut(s) 692, 758
SfcI CTRYAG 2 cut(s) 198, 312
SinI GGWCC 1 cut(s) 557
SphI GCATGC 1 cut(s) 512
Sse9I AATT 4 cut(s) 377, 572, 718, 831
SsiI CCGC 2 cut(s) 194, 800
SspI AATATT 1 cut(s) 361
SspMI CTAG 4 cut(s) 108, 684, 780, 839
StyD4I CCNGG 1 cut(s) 503
StyI CCWWGG 2 cut(s) 134, 434
TaaI ACNGT 2 cut(s) 60, 202
TaqI TCGA 2 cut(s) 146, 457
TasI AATT 4 cut(s) 377, 572, 718, 831
TauI GCSGC 1 cut(s) 197
TfiI GAWTC 2 cut(s) 470, 842
Tru1I TTAA 7 cut(s) 117, 393, 405, 521, 618, 629, 753
Tru9I TTAA 7 cut(s) 117, 393, 405, 521, 618, 629, 753
TseFI GTSAC 1 cut(s) 235
TseI GCWGC 4 cut(s) 5, 188, 191, 350
Tsp45I GTSAC 1 cut(s) 235
TspDTI ATGAA 4 cut(s) 117, 311, 387, 519
VpaK11BI GGWCC 1 cut(s) 557
XapI RAATTY 2 cut(s) 377, 718
XceI RCATGY 1 cut(s) 512
XspI CTAG 4 cut(s) 108, 684, 780, 839
Zsp2I ATGCAT 1 cut(s) 500
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.