FvH4_6g29710

post-illumination chlorophyll fluorescence increase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0008492
Physical Location & Seq
Reverse (-)
22949753 .. 22952912
3160 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g29710.t1

Sequence Viewer

Length: 594 bp
ATGTTTGAACTTGGAAGGGCCCCTGTGTTTTGGAAAACTATGAACGGTCTTCCACCTACGGCTGGAGAAAAGCTAAGGATTTTCTACAATCCAGCTGCAAAGAATCTTGTTCCAAATGAAGAATATGGGGTTGCCTTTAATGGAGGTTTTAATCAGCCTATAATGTGTGGTGGTGAGCCAAGGGCAATGCTTAGGAAAAGTCGAGGCAAAGCTGATTCCCCAATATATTCCATCCAGATTTGCATTCCGAAGCATGCTCTGAACTTAATTTTTTCATTTACAAATGGAGATGAATGGGATGGTCCTTACAGACTACAAGTTCAAGTTCCCAAGGCTTTCAAAAACAAACCAATTGAATTCTTCAACAAGGGACTAGCGGAAGAGCTGAGTAAAGATGGTGCTTGCGAACGAGCAATCTTCCCTGATACAAGCATTGTAGTGAATAGATGTTCCATCATGGGGAACTTGACCGTTGAAGGAGGTGACCGTTGCAACCTTGATCTCGTACTGGGATGCACAGATCCCAGCTCACCACTCTATGATCCAAATGCCAATGTAGACGACGGAACATGCCCCATGGATCTGGATGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

198

Amino Acids

21.64

Weight (kDa)

5.1

Isoelectric Point (pI)

33.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ig_PIFI PF25419 1 - 129 1e-72 PIFI-like, immunoglobulin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 558
AciI CCGC 1 cut(s) 377
AclWI GGATC 3 cut(s) 515, 536, 588
AcsI RAATTY 1 cut(s) 356
AfaI GTAC 1 cut(s) 507
AfiI CCNNNNNNNGG 2 cut(s) 62, 459
AgsI TTSAA 6 cut(s) 8, 323, 340, 356, 364, 476
AluBI AGCT 5 cut(s) 73, 95, 212, 385, 528
AluI AGCT 5 cut(s) 73, 95, 212, 385, 528
AlwI GGATC 3 cut(s) 515, 536, 588
AoxI GGCC 1 cut(s) 18
ApaI GGGCCC 1 cut(s) 22
ApeKI GCWGC 1 cut(s) 95
ApoI RAATTY 1 cut(s) 356
AspS9I GGNCC 3 cut(s) 18, 19, 302
AsuHPI GGTGA 3 cut(s) 185, 494, 522
AvaII GGWCC 1 cut(s) 302
BaeGI GKGCMC 1 cut(s) 22
BanII GRGCYC 1 cut(s) 22
BbsI GAAGAC 1 cut(s) 41
BbvI GCAGC 1 cut(s) 82
BccI CCATC 4 cut(s) 239, 293, 389, 461
BceAI ACGGC 1 cut(s) 75
BfaI CTAG 1 cut(s) 374
BisI GCNGC 1 cut(s) 96
BlsI GCNGC 1 cut(s) 97
Bme18I GGWCC 1 cut(s) 302
BmgT120I GGNCC 3 cut(s) 18, 19, 302
BmiI GGNNCC 2 cut(s) 20, 21
BmrI ACTGGG 1 cut(s) 518
BmsI GCATC 2 cut(s) 503, 577
BmuI ACTGGG 1 cut(s) 518
BpiI GAAGAC 1 cut(s) 41
BpmI CTGGAG 1 cut(s) 84
Bpu10I CCTNAGC 2 cut(s) 74, 191
BsaJI CCNNGG 3 cut(s) 179, 330, 576
Bsc4I CCNNNNNNNGG 2 cut(s) 62, 459
Bse1I ACTGG 1 cut(s) 513
Bse3DI GCAATG 1 cut(s) 192
BseDI CCNNGG 3 cut(s) 179, 330, 576
BseGI GGATG 4 cut(s) 231, 304, 518, 592
BseLI CCNNNNNNNGG 2 cut(s) 62, 459
BseMI GCAATG 1 cut(s) 192
BseMII CTCAG 1 cut(s) 377
BseNI ACTGG 1 cut(s) 513
BseSI GKGCMC 1 cut(s) 22
BseXI GCAGC 1 cut(s) 82
BseYI CCCAGC 1 cut(s) 524
BshFI GGCC 1 cut(s) 20
BslFI GGGAC 1 cut(s) 384
BslI CCNNNNNNNGG 2 cut(s) 62, 459
BsmFI GGGAC 1 cut(s) 384
BsmI GAATGC 1 cut(s) 243
BsnI GGCC 1 cut(s) 20
Bsp120I GGGCCC 1 cut(s) 18
Bsp1286I GDGCHC 1 cut(s) 22
Bsp143I GATC 4 cut(s) 499, 520, 541, 580
Bsp19I CCATGG 1 cut(s) 576
BspACI CCGC 1 cut(s) 377
BspANI GGCC 1 cut(s) 20
BspCNI CTCAG 1 cut(s) 378
BspLI GGNNCC 2 cut(s) 20, 21
BspPI GGATC 3 cut(s) 515, 536, 588
BspQI GCTCTTC 1 cut(s) 375
BsrDI GCAATG 1 cut(s) 192
BsrI ACTGG 1 cut(s) 513
BssECI CCNNGG 3 cut(s) 179, 330, 576
BssMI GATC 4 cut(s) 499, 520, 541, 580
BssT1I CCWWGG 3 cut(s) 179, 330, 576
Bst4CI ACNGT 3 cut(s) 47, 472, 488
Bst6I CTCTTC 1 cut(s) 375
BstC8I GCNNGC 2 cut(s) 255, 403
BstDEI CTNAG 3 cut(s) 74, 191, 386
BstDSI CCRYGG 1 cut(s) 576
BstEII GGTNACC 1 cut(s) 482
BstF5I GGATG 4 cut(s) 231, 304, 518, 592
BstKTI GATC 4 cut(s) 502, 523, 544, 583
BstMBI GATC 4 cut(s) 499, 520, 541, 580
BstNSI RCATGY 2 cut(s) 257, 573
BstPI GGTNACC 1 cut(s) 482
BstSLI GKGCMC 1 cut(s) 22
BstV1I GCAGC 1 cut(s) 82
BstV2I GAAGAC 1 cut(s) 41
BstX2I RGATCY 2 cut(s) 520, 580
BstXI CCANNNNNNTGG 1 cut(s) 583
BstYI RGATCY 2 cut(s) 520, 580
BsuRI GGCC 1 cut(s) 20
BtgI CCRYGG 1 cut(s) 576
BtsCI GGATG 4 cut(s) 231, 304, 518, 592
Cac8I GCNNGC 2 cut(s) 255, 403
Cfr13I GGNCC 3 cut(s) 18, 19, 302
Csp6I GTAC 1 cut(s) 506
CviAII CATG 4 cut(s) 254, 457, 570, 577
CviQI GTAC 1 cut(s) 506
DdeI CTNAG 3 cut(s) 74, 191, 386
DpnI GATC 4 cut(s) 501, 522, 543, 582
DpnII GATC 4 cut(s) 499, 520, 541, 580
Eam1104I CTCTTC 1 cut(s) 375
EarI CTCTTC 1 cut(s) 375
Eco130I CCWWGG 3 cut(s) 179, 330, 576
Eco24I GRGCYC 1 cut(s) 22
Eco47I GGWCC 1 cut(s) 302
Eco91I GGTNACC 1 cut(s) 482
EcoO109I RGGNCCY 2 cut(s) 18, 19
EcoO65I GGTNACC 1 cut(s) 482
EcoRI GAATTC 1 cut(s) 356
EcoT14I CCWWGG 3 cut(s) 179, 330, 576
EcoT38I GRGCYC 1 cut(s) 22
ErhI CCWWGG 3 cut(s) 179, 330, 576
FaeI CATG 4 cut(s) 257, 460, 573, 580
FaiI YATR 9 cut(s) 41, 126, 161, 226, 255, 458, 540, 571, 578
FaqI GGGAC 1 cut(s) 384
FatI CATG 4 cut(s) 253, 456, 569, 576
FblI GTMKAC 1 cut(s) 558
Fnu4HI GCNGC 1 cut(s) 96
FokI GGATG 3 cut(s) 218, 311, 525
FriOI GRGCYC 1 cut(s) 22
Fsp4HI GCNGC 1 cut(s) 96
FspBI CTAG 1 cut(s) 374
GluI GCNGC 1 cut(s) 96
GsaI CCCAGC 1 cut(s) 528
GsuI CTGGAG 1 cut(s) 84
HaeIII GGCC 1 cut(s) 20
Hin1II CATG 4 cut(s) 257, 460, 573, 580
HinfI GANTC 2 cut(s) 103, 215
HphI GGTGA 3 cut(s) 185, 494, 522
Hpy166II GTNNAC 1 cut(s) 559
Hpy188I TCNGA 2 cut(s) 249, 261
Hpy188III TCNNGA 2 cut(s) 235, 584
Hpy8I GTNNAC 1 cut(s) 559
Hpy99I CGWCG 1 cut(s) 566
HpyAV CCTTC 2 cut(s) 9, 470
HpyCH4III ACNGT 3 cut(s) 47, 472, 488
HpyCH4V TGCA 4 cut(s) 98, 243, 492, 516
HpyF3I CTNAG 3 cut(s) 74, 191, 386
Hsp92II CATG 4 cut(s) 257, 460, 573, 580
Kzo9I GATC 4 cut(s) 499, 520, 541, 580
LguI GCTCTTC 1 cut(s) 375
LpnPI CCDG 8 cut(s) 36, 48, 105, 248, 435, 494, 538, 569
Lsp1109I GCAGC 1 cut(s) 82
LweI GCATC 2 cut(s) 503, 577
MaeI CTAG 1 cut(s) 374
MaeIII GTNAC 1 cut(s) 482
MalI GATC 4 cut(s) 501, 522, 543, 582
MboI GATC 4 cut(s) 499, 520, 541, 580
MboII GAAGA 5 cut(s) 41, 131, 352, 392, 409
MfeI CAATTG 1 cut(s) 351
MflI RGATCY 2 cut(s) 520, 580
MhlI GDGCHC 1 cut(s) 22
MluCI AATT 3 cut(s) 267, 351, 356
MnlI CCTC 3 cut(s) 137, 197, 473
MseI TTAA 4 cut(s) 138, 150, 266, 592
MslI CAYNNNNRTG 1 cut(s) 437
MspA1I CMGCKG 1 cut(s) 95
MunI CAATTG 1 cut(s) 351
Mva1269I GAATGC 1 cut(s) 243
NcoI CCATGG 1 cut(s) 576
NdeII GATC 4 cut(s) 499, 520, 541, 580
NlaIII CATG 4 cut(s) 257, 460, 573, 580
NlaIV GGNNCC 2 cut(s) 20, 21
NmuCI GTSAC 1 cut(s) 482
NspI RCATGY 2 cut(s) 257, 573
PaeI GCATGC 1 cut(s) 257
PciSI GCTCTTC 1 cut(s) 375
PctI GAATGC 1 cut(s) 243
PfeI GAWTC 2 cut(s) 103, 215
PkrI GCNGC 1 cut(s) 97
PspEI GGTNACC 1 cut(s) 482
PspFI CCCAGC 1 cut(s) 524
PspN4I GGNNCC 2 cut(s) 20, 21
PspOMI GGGCCC 1 cut(s) 18
PspPI GGNCC 3 cut(s) 18, 19, 302
PsuI RGATCY 2 cut(s) 520, 580
PvuII CAGCTG 1 cut(s) 95
RsaI GTAC 1 cut(s) 507
RsaNI GTAC 1 cut(s) 506
RseI CAYNNNNRTG 1 cut(s) 437
SapI GCTCTTC 1 cut(s) 375
SaqAI TTAA 4 cut(s) 138, 150, 266, 592
SatI GCNGC 1 cut(s) 96
Sau3AI GATC 4 cut(s) 499, 520, 541, 580
Sau96I GGNCC 3 cut(s) 18, 19, 302
SduI GDGCHC 1 cut(s) 22
SetI ASST 9 cut(s) 58, 75, 97, 148, 214, 387, 484, 498, 530
SfaNI GCATC 2 cut(s) 503, 577
SinI GGWCC 1 cut(s) 302
SmiMI CAYNNNNRTG 1 cut(s) 437
SphI GCATGC 1 cut(s) 257
Sse9I AATT 3 cut(s) 267, 351, 356
SsiI CCGC 1 cut(s) 377
SspMI CTAG 1 cut(s) 374
StyI CCWWGG 3 cut(s) 179, 330, 576
TaaI ACNGT 3 cut(s) 47, 472, 488
TaqI TCGA 1 cut(s) 202
TasI AATT 3 cut(s) 267, 351, 356
TfiI GAWTC 2 cut(s) 103, 215
Tru1I TTAA 4 cut(s) 138, 150, 266, 592
Tru9I TTAA 4 cut(s) 138, 150, 266, 592
TseFI GTSAC 1 cut(s) 482
TseI GCWGC 1 cut(s) 95
Tsp45I GTSAC 1 cut(s) 482
TspDTI ATGAA 4 cut(s) 56, 132, 264, 306
TspGWI ACGGA 1 cut(s) 579
VpaK11BI GGWCC 1 cut(s) 302
XapI RAATTY 1 cut(s) 356
XceI RCATGY 2 cut(s) 257, 573
XmiI GTMKAC 1 cut(s) 558
XspI CTAG 1 cut(s) 374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.