AT3G17660

ADP-ribosylation factor GTPase-activating protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0010387
Physical Location & Seq
Forward (+)
6037598 .. 6039407
1810 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G17660.4

Sequence Viewer

Length: 699 bp
ATGAACAGGAAGGCCTCTGTTTCCAAGGAGCTCAACGCCAAGCATTCAAAGATATTGGAAGCACTTTTGAAGCATCCAGACAATCGAGAATGTGCAGATTGTAGATCAAAGGCACCAAGATGGGCAAGTGTGAACCTTGGGATATTCATTTGTATGCAATGTTCTGGAATCCATCGTAGCCTTGGCGTCCACATCTCTCAGGTAAGGTCTATAACTCTGGATACATGGCTTCCAGATCAGGTTGCTTTCATGAAATCTACCGGTAATGCTAAGGGAAATGAGTATTGGGAATCAGAATTGCCTCAACATTTCGAGAGAAGTTCAAGCGACACGTTTATAAGAGCCAAATACAGTGAGAAGAGATGGGTTTCACCGGGAGCGATTCAACCGGCTCCTATAGTTAGCCAGCTAAGCTGCAAAGTTAGTCACTTGGTAGAGAGTGGATATAAACCTGAAACTCCAAAGAAAGCTAGAACTCTTTCACTTGACGAAGAGATCCTTCTTCATCATGTTCTTCAAGTAACACCTCCAGAAACGAGAACTCGTGCGGGTTCGGTAGATATGAAGGAGAATGTATATGTTGTACCTCTACCAGAATTCAAGAAACCAAATCAAAAGAATGAGAATTTCTCCAGTGAAGTAAACCAGAATAGAAGAACCACCATAGCACCACCGTCGAGCTGGGCTACTTTCGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04144 map04144
Pfam Domains
Protein Families
ArfGap

Protein Analysis

232

Amino Acids

26.21

Weight (kDa)

9.19

Isoelectric Point (pI)

49.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ArfGap PF01412 17 - 124 2e-42 Putative GTPase activating protein for Arf
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 338
AccB1I GGYRCC 1 cut(s) 112
AciI CCGC 1 cut(s) 548
AclWI GGATC 1 cut(s) 490
AcsI RAATTY 2 cut(s) 596, 625
AcyI GRCGYC 1 cut(s) 186
AfaI GTAC 1 cut(s) 585
AflIII ACRYGT 1 cut(s) 330
AgeI ACCGGT 1 cut(s) 260
AgsI TTSAA 6 cut(s) 48, 70, 324, 386, 518, 601
AjuI GAANNNNNNNTTGG 2 cut(s) 268, 300
AluBI AGCT 5 cut(s) 31, 409, 414, 470, 681
AluI AGCT 5 cut(s) 31, 409, 414, 470, 681
Alw21I GWGCWC 1 cut(s) 33
AlwI GGATC 1 cut(s) 490
AoxI GGCC 1 cut(s) 12
ApeKI GCWGC 1 cut(s) 414
ApoI RAATTY 2 cut(s) 596, 625
AsiGI ACCGGT 1 cut(s) 260
Asp700I GAANNNNTTC 1 cut(s) 478
AsuC2I CCSGG 1 cut(s) 375
AsuHPI GGTGA 1 cut(s) 363
BanI GGYRCC 1 cut(s) 112
BanII GRGCYC 1 cut(s) 33
BauI CACGAG 1 cut(s) 543
Bbv12I GWGCWC 1 cut(s) 33
BbvI GCAGC 1 cut(s) 401
BccI CCATC 3 cut(s) 114, 180, 357
BcgI CGANNNNNNTGC 2 cut(s) 657, 691
BciVI GTATCC 1 cut(s) 214
BcnI CCSGG 1 cut(s) 375
BfaI CTAG 1 cut(s) 471
BfmI CTRYAG 1 cut(s) 396
BfuI GTATCC 1 cut(s) 214
BisI GCNGC 1 cut(s) 415
BlpI GCTNAGC 1 cut(s) 410
BlsI GCNGC 1 cut(s) 416
Bme1390I CCNGG 1 cut(s) 375
BmiI GGNNCC 2 cut(s) 114, 393
BmrFI CCNGG 1 cut(s) 375
BmsI GCATC 1 cut(s) 82
BplI GAGNNNNNCTC 2 cut(s) 614, 646
BpmI CTGGAG 2 cut(s) 513, 616
Bpu10I CCTNAGC 1 cut(s) 270
Bpu1102I GCTNAGC 1 cut(s) 410
BpuMI CCSGG 1 cut(s) 375
BsaHI GRCGYC 1 cut(s) 186
BsaJI CCNNGG 3 cut(s) 24, 136, 181
BsaWI WCCGGW 1 cut(s) 260
Bse118I RCCGGY 2 cut(s) 260, 388
Bse1I ACTGG 1 cut(s) 633
Bse3DI GCAATG 1 cut(s) 164
BseDI CCNNGG 3 cut(s) 24, 136, 181
BseGI GGATG 1 cut(s) 73
BseMI GCAATG 1 cut(s) 164
BseMII CTCAG 1 cut(s) 212
BseNI ACTGG 1 cut(s) 633
BseXI GCAGC 1 cut(s) 401
BseYI CCCAGC 1 cut(s) 681
BsgI GTGCAG 1 cut(s) 114
BshFI GGCC 1 cut(s) 14
BshNI GGYRCC 1 cut(s) 112
BshTI ACCGGT 1 cut(s) 260
BsiHKAI GWGCWC 1 cut(s) 33
BsiSI CCGG 3 cut(s) 261, 374, 389
BsmI GAATGC 1 cut(s) 43
BsnI GGCC 1 cut(s) 14
Bsp1286I GDGCHC 1 cut(s) 33
Bsp143I GATC 3 cut(s) 104, 235, 495
Bsp1720I GCTNAGC 1 cut(s) 410
BspACI CCGC 1 cut(s) 548
BspANI GGCC 1 cut(s) 14
BspCNI CTCAG 1 cut(s) 211
BspHI TCATGA 1 cut(s) 249
BspLI GGNNCC 2 cut(s) 114, 393
BspPI GGATC 1 cut(s) 490
BspT107I GGYRCC 1 cut(s) 112
BsrDI GCAATG 1 cut(s) 164
BsrFI RCCGGY 2 cut(s) 260, 388
BsrI ACTGG 1 cut(s) 633
BssAI RCCGGY 2 cut(s) 260, 388
BssECI CCNNGG 3 cut(s) 24, 136, 181
BssMI GATC 3 cut(s) 104, 235, 495
BssNI GRCGYC 1 cut(s) 186
BssSI CACGAG 1 cut(s) 543
BssT1I CCWWGG 3 cut(s) 24, 136, 181
Bst2BI CACGAG 1 cut(s) 543
Bst4CI ACNGT 2 cut(s) 353, 675
Bst6I CTCTTC 2 cut(s) 353, 486
BstACI GRCGYC 1 cut(s) 186
BstC8I GCNNGC 1 cut(s) 407
BstDEI CTNAG 3 cut(s) 198, 270, 410
BstF5I GGATG 1 cut(s) 73
BstKTI GATC 3 cut(s) 107, 238, 498
BstMBI GATC 3 cut(s) 104, 235, 495
BstMWI GCNNNNNNNGC 1 cut(s) 411
BstSCI CCNGG 1 cut(s) 373
BstSFI CTRYAG 1 cut(s) 396
BstV1I GCAGC 1 cut(s) 401
BstX2I RGATCY 1 cut(s) 495
BstYI RGATCY 1 cut(s) 495
BsuI GTATCC 1 cut(s) 214
BsuRI GGCC 1 cut(s) 14
BtsCI GGATG 1 cut(s) 73
BtsIMutI CAGTG 2 cut(s) 358, 640
Cac8I GCNNGC 1 cut(s) 407
CciI TCATGA 1 cut(s) 249
Cfr10I RCCGGY 2 cut(s) 260, 388
CseI GACGC 1 cut(s) 175
Csp6I GTAC 1 cut(s) 584
CspAI ACCGGT 1 cut(s) 260
CviAII CATG 3 cut(s) 225, 250, 509
CviQI GTAC 1 cut(s) 584
DdeI CTNAG 3 cut(s) 198, 270, 410
DpnI GATC 3 cut(s) 106, 237, 497
DpnII GATC 3 cut(s) 104, 235, 495
Eam1104I CTCTTC 2 cut(s) 353, 486
EarI CTCTTC 2 cut(s) 353, 486
Ecl136II GAGCTC 1 cut(s) 31
Eco130I CCWWGG 3 cut(s) 24, 136, 181
Eco147I AGGCCT 1 cut(s) 14
Eco24I GRGCYC 1 cut(s) 33
Eco53kI GAGCTC 1 cut(s) 31
EcoICRI GAGCTC 1 cut(s) 31
EcoRI GAATTC 1 cut(s) 596
EcoT14I CCWWGG 3 cut(s) 24, 136, 181
EcoT38I GRGCYC 1 cut(s) 33
ErhI CCWWGG 3 cut(s) 24, 136, 181
FaeI CATG 3 cut(s) 228, 253, 512
FalI AAGNNNNNCTT 2 cut(s) 483, 515
FatI CATG 3 cut(s) 224, 249, 508
FauI CCCGC 1 cut(s) 541
Fnu4HI GCNGC 1 cut(s) 415
FokI GGATG 1 cut(s) 60
FriOI GRGCYC 1 cut(s) 33
Fsp4HI GCNGC 1 cut(s) 415
FspBI CTAG 1 cut(s) 471
GluI GCNGC 1 cut(s) 415
GsaI CCCAGC 1 cut(s) 685
GsuI CTGGAG 2 cut(s) 513, 616
HaeIII GGCC 1 cut(s) 14
HapII CCGG 3 cut(s) 261, 374, 389
HgaI GACGC 1 cut(s) 175
Hin1I GRCGYC 1 cut(s) 186
Hin1II CATG 3 cut(s) 228, 253, 512
HinfI GANTC 3 cut(s) 168, 290, 382
HpaII CCGG 3 cut(s) 261, 374, 389
HphI GGTGA 1 cut(s) 363
Hpy166II GTNNAC 3 cut(s) 133, 190, 643
Hpy188I TCNGA 1 cut(s) 295
Hpy188III TCNNGA 9 cut(s) 77, 86, 165, 218, 233, 250, 313, 530, 601
Hpy8I GTNNAC 3 cut(s) 133, 190, 643
Hpy99I CGWCG 1 cut(s) 679
HpyAV CCTTC 3 cut(s) 4, 509, 559
HpyCH4III ACNGT 2 cut(s) 353, 675
HpyCH4IV ACGT 1 cut(s) 332
HpyCH4V TGCA 3 cut(s) 95, 157, 417
HpyF10VI GCNNNNNNNGC 1 cut(s) 411
HpyF3I CTNAG 3 cut(s) 198, 270, 410
HpySE526I ACGT 1 cut(s) 332
Hsp92I GRCGYC 1 cut(s) 186
Hsp92II CATG 3 cut(s) 228, 253, 512
Kzo9I GATC 3 cut(s) 104, 235, 495
LmnI GCTCC 3 cut(s) 28, 377, 397
Lsp1109I GCAGC 1 cut(s) 401
LweI GCATC 1 cut(s) 82
MaeI CTAG 1 cut(s) 471
MaeII ACGT 1 cut(s) 332
MaeIII GTNAC 2 cut(s) 425, 520
MalI GATC 3 cut(s) 106, 237, 497
MboI GATC 3 cut(s) 104, 235, 495
MboII GAAGA 5 cut(s) 370, 494, 503, 506, 666
MflI RGATCY 1 cut(s) 495
MhlI GDGCHC 1 cut(s) 33
MluCI AATT 3 cut(s) 296, 596, 625
MnlI CCTC 4 cut(s) 25, 312, 537, 597
MroXI GAANNNNTTC 1 cut(s) 478
MslI CAYNNNNRTG 2 cut(s) 118, 152
MspI CCGG 3 cut(s) 261, 374, 389
MspR9I CCNGG 1 cut(s) 375
Mva1269I GAATGC 1 cut(s) 43
MwoI GCNNNNNNNGC 1 cut(s) 411
NciI CCSGG 1 cut(s) 375
NdeII GATC 3 cut(s) 104, 235, 495
NlaIII CATG 3 cut(s) 228, 253, 512
NlaIV GGNNCC 2 cut(s) 114, 393
NmuCI GTSAC 1 cut(s) 425
PagI TCATGA 1 cut(s) 249
PceI AGGCCT 1 cut(s) 14
PctI GAATGC 1 cut(s) 43
PdmI GAANNNNTTC 1 cut(s) 478
PfeI GAWTC 3 cut(s) 168, 290, 382
PinAI ACCGGT 1 cut(s) 260
PkrI GCNGC 1 cut(s) 416
PsiI TTATAA 1 cut(s) 338
Psp124BI GAGCTC 1 cut(s) 33
PspFI CCCAGC 1 cut(s) 681
PspN4I GGNNCC 2 cut(s) 114, 393
PsrI GAACNNNNNNTAC 2 cut(s) 145, 177
PsuI RGATCY 1 cut(s) 495
RsaI GTAC 1 cut(s) 585
RsaNI GTAC 1 cut(s) 584
RseI CAYNNNNRTG 2 cut(s) 118, 152
SacI GAGCTC 1 cut(s) 33
SatI GCNGC 1 cut(s) 415
Sau3AI GATC 3 cut(s) 104, 235, 495
ScrFI CCNGG 1 cut(s) 375
SduI GDGCHC 1 cut(s) 33
SfaNI GCATC 1 cut(s) 82
SfcI CTRYAG 1 cut(s) 396
SmiMI CAYNNNNRTG 2 cut(s) 118, 152
Sse9I AATT 3 cut(s) 296, 596, 625
SseBI AGGCCT 1 cut(s) 14
SsiI CCGC 1 cut(s) 548
SspMI CTAG 1 cut(s) 471
SstI GAGCTC 1 cut(s) 33
StuI AGGCCT 1 cut(s) 14
StyD4I CCNGG 1 cut(s) 373
StyI CCWWGG 3 cut(s) 24, 136, 181
TaaI ACNGT 2 cut(s) 353, 675
TaiI ACGT 1 cut(s) 335
TaqI TCGA 4 cut(s) 85, 312, 677, 693
TasI AATT 3 cut(s) 296, 596, 625
TfiI GAWTC 3 cut(s) 168, 290, 382
TscAI CASTG 2 cut(s) 358, 640
TseFI GTSAC 1 cut(s) 425
TseI GCWGC 1 cut(s) 414
Tsp45I GTSAC 1 cut(s) 425
TspDTI ATGAA 6 cut(s) 17, 136, 238, 266, 494, 578
TspRI CASTG 2 cut(s) 358, 640
XapI RAATTY 2 cut(s) 596, 625
XcmI CCANNNNNNNNNTGG 2 cut(s) 179, 678
XmnI GAANNNNTTC 1 cut(s) 478
XspI CTAG 1 cut(s) 471
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.