Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0010387

Physical Location & Seq

Genomic Coordinates Reverse (-)

24087030 .. 24090018

Gene Structure 2989 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g21440.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGAGGCTGGCATGTTTTGAGGAATGCCAACCGTTTTTCCTTGGAATTAGCCTCTACCTTCATTCCATACTCTCTCTCTCTCTCCGTGGCCTTGGGCCTTGCCTTCCTTCGCTCTCAAGTCTTAACGCCTTGCCTGCCTCCGTTGTTGCTGCTGCTGCTGCGTATGTGTTATTGTGTTGTTGTTTCCGGTCCCGTATCATCCAAACCAACAAACTAGCGAAGGTAGGCGCACAAGCATACACATTCACACTAGCAACAATGAACAACAAGGCCTCCGTTTCCAAAGACCTCAACGCCAAACACCTCAAGATTTTAGAAGGCCTTCTTAAGCTGCCACAAAACAGGGAATGTGCTGATTGCCGGAGCAAAGCCCCGCGATGGGCTAGTGTCAACCTGGGAATATTTATTTGCATGCAGTGCTCAGGAATTCATCGGAGTCTTGGAGTGCATATATCAAAGGTACGGTCTACAACTTTGGATACATGGCTGCCTGAACAGGTTGCTTTTATGGAATCCATGGGTAATGAAAAGGCAAACAGTTATTGGGAAAAAGAATTGCCACCAAATTTTGACAGAAGTGGGACTGAGAATTTTATTCGTGCCAAGTATGAGGGGAAAATGTGGGGTTCGAAGAATGCAAAACAACCAGCTCCTAAACCAGTAGATATGAGCATCAGTTCTAACAGTTTGGTAAAGGGCAGAGCCACATGTGGAGTTCCTAAGAAAACAAGGAGACATTCTCTTGAGGAGGCAATGCTTTTTACAAACCTGGCAGAAGCTGCTCCTACAGTGGCAAGATCCCGTGGGGGTTCATTAGATTTGAATCATAAGTTTACTACGTCACCTCCAGCAAAGGGGCCACCACCAACGATGGAATGTGATACAGTCACAAAAAAGATCAACGGTACAACAGACCTATTCAGCTTGCTTTATGTTCATGATGCAAAGCAGAAGTACGCCACTCCTCCGCTCTGGCAAACTTTTGATTGTAAGAAAACTATAGTAACATCTTTCTTTTTGTTACTTGTTTACTATTTTGCAGTTGGGAAGGAAGTAGTAAAATTGATGAAGGGAAGATGGAAAATAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

ArfGap

Protein Analysis

364

Amino Acids

40.18

Weight (kDa)

9.56

Isoelectric Point (pI)

46.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010387)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17660 AT3G17660 AT3G17660 AT3G17660 AT3G17660
fragaria_vesca	FvH4_5g18300 FvH4_5g18300
malus_domestica	MD05G1272000.v1.1 MD06G1238800.v1.1 MD12G1051500.v1.1
prunus_persica	Prupe.5G242700_v2.0.a1
pyrus_communis	pycom06g21440 pycom14g20610
rosa_chinensis	RchiOBHm_Chr7g0177281
rosa_laevigata	RLG00000005549
rosa_roxburghii	Rroxscaffold_3G00275990
rosa_rugosa	Rorug06G0404400
rosa_samantha	Rh7AG004400 Rh7CG004100 Rh7DG004100
rosa_wichuraiana	Rw7G000360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	970
AccI	GTMKAC	1 cut(s)	467
AccII	CGCG	1 cut(s)	376
AciI	CCGC	2 cut(s)	374, 968
AclWI	GGATC	1 cut(s)	792
AcsI	RAATTY	3 cut(s)	426, 565, 589
AfaI	GTAC	3 cut(s)	462, 907, 956
AfiI	CCNNNNNNNGG	3 cut(s)	378, 379, 854
AflII	CTTAAG	1 cut(s)	326
AflIII	ACRYGT	1 cut(s)	707
AgsI	TTSAA	1 cut(s)	823
AjnI	CCWGG	2 cut(s)	393, 768
AluBI	AGCT	4 cut(s)	331, 650, 779, 924
AluI	AGCT	4 cut(s)	331, 650, 779, 924
Alw21I	GWGCWC	1 cut(s)	422
Alw26I	GTCTC	1 cut(s)	727
AlwI	GGATC	1 cut(s)	792
AlwNI	CAGNNNCTG	1 cut(s)	779
AoxI	GGCC	5 cut(s)	88, 95, 270, 319, 857
ApeKI	GCWGC	7 cut(s)	149, 152, 155, 158, 331, 487, 779
ApoI	RAATTY	3 cut(s)	426, 565, 589
ArsI	GACNNNNNNTTYG	2 cut(s)	449, 481
Asp700I	GAANNNNTTC	1 cut(s)	321
AspLEI	GCGC	1 cut(s)	230
AspS9I	GGNCC	3 cut(s)	95, 189, 857
AsuHPI	GGTGA	1 cut(s)	834
AsuII	TTCGAA	1 cut(s)	629
AvaII	GGWCC	1 cut(s)	189
Bbv12I	GWGCWC	1 cut(s)	422
BbvI	GCAGC	7 cut(s)	136, 139, 142, 145, 318, 474, 766
BccI	CCATC	3 cut(s)	372, 865, 1071
BciT130I	CCWGG	2 cut(s)	395, 770
BciVI	GTATCC	1 cut(s)	472
BcoDI	GTCTC	1 cut(s)	727
BfaI	CTAG	3 cut(s)	215, 251, 384
BfmI	CTRYAG	2 cut(s)	786, 999
BfrI	CTTAAG	1 cut(s)	326
BfuI	GTATCC	1 cut(s)	472
BisI	GCNGC	7 cut(s)	150, 153, 156, 159, 332, 488, 780
BlsI	GCNGC	7 cut(s)	151, 154, 157, 160, 333, 489, 781
Bme1390I	CCNGG	2 cut(s)	395, 770
Bme18I	GGWCC	1 cut(s)	189
BmgT120I	GGNCC	3 cut(s)	95, 189, 857
BmiI	GGNNCC	2 cut(s)	191, 858
BmrFI	CCNGG	2 cut(s)	395, 770
BmsI	GCATC	2 cut(s)	681, 931
BplI	GAGNNNNNCTC	2 cut(s)	724, 756
BpmI	CTGGAG	1 cut(s)	831
Bpu10I	CCTNAGC	1 cut(s)	421
Bpu14I	TTCGAA	1 cut(s)	629
BpuEI	CTTGAG	3 cut(s)	100, 290, 764
BsaBI	GATNNNNATC	1 cut(s)	822
BsaJI	CCNNGG	6 cut(s)	40, 85, 91, 394, 516, 802
BsaWI	WCCGGW	1 cut(s)	186
BsaXI	ACNNNNNCTCC	4 cut(s)	257, 287, 829, 859
Bsc4I	CCNNNNNNNGG	3 cut(s)	378, 379, 854
Bse1I	ACTGG	1 cut(s)	659
Bse3DI	GCAATG	1 cut(s)	759
Bse8I	GATNNNNATC	1 cut(s)	822
BseBI	CCWGG	2 cut(s)	395, 770
BseDI	CCNNGG	6 cut(s)	40, 85, 91, 394, 516, 802
BseGI	GGATG	1 cut(s)	198
BseJI	GATNNNNATC	1 cut(s)	822
BseLI	CCNNNNNNNGG	3 cut(s)	378, 379, 854
BseMI	GCAATG	1 cut(s)	759
BseMII	CTCAG	2 cut(s)	435, 576
BseNI	ACTGG	1 cut(s)	659
BseRI	GAGGAG	2 cut(s)	761, 954
BseXI	GCAGC	7 cut(s)	136, 139, 142, 145, 318, 474, 766
Bsh1236I	CGCG	1 cut(s)	376
BshFI	GGCC	5 cut(s)	90, 97, 272, 321, 859
BsiHKAI	GWGCWC	1 cut(s)	422
BsiSI	CCGG	2 cut(s)	187, 361
BslFI	GGGAC	2 cut(s)	175, 595
BslI	CCNNNNNNNGG	3 cut(s)	378, 379, 854
BsmAI	GTCTC	1 cut(s)	727
BsmFI	GGGAC	2 cut(s)	175, 595
BsmI	GAATGC	2 cut(s)	29, 640
BsnI	GGCC	5 cut(s)	90, 97, 272, 321, 859
Bsp119I	TTCGAA	1 cut(s)	629
Bsp1286I	GDGCHC	1 cut(s)	422
Bsp143I	GATC	2 cut(s)	797, 897
Bsp19I	CCATGG	1 cut(s)	516
BspACI	CCGC	2 cut(s)	374, 968
BspANI	GGCC	5 cut(s)	90, 97, 272, 321, 859
BspCNI	CTCAG	2 cut(s)	434, 577
BspFNI	CGCG	1 cut(s)	376
BspHI	TCATGA	1 cut(s)	937
BspLI	GGNNCC	2 cut(s)	191, 858
BspPI	GGATC	1 cut(s)	792
BspT104I	TTCGAA	1 cut(s)	629
BspTI	CTTAAG	1 cut(s)	326
BsrBI	CCGCTC	1 cut(s)	970
BsrDI	GCAATG	1 cut(s)	759
BsrI	ACTGG	1 cut(s)	659
BssECI	CCNNGG	6 cut(s)	40, 85, 91, 394, 516, 802
BssMI	GATC	2 cut(s)	797, 897
BssT1I	CCWWGG	3 cut(s)	40, 91, 516
Bst2UI	CCWGG	2 cut(s)	395, 770
Bst4CI	ACNGT	7 cut(s)	33, 465, 539, 686, 790, 886, 905
BstAFI	CTTAAG	1 cut(s)	326
BstAPI	GCANNNNNTGC	2 cut(s)	417, 779
BstBI	TTCGAA	1 cut(s)	629
BstC8I	GCNNGC	4 cut(s)	9, 135, 413, 926
BstDEI	CTNAG	3 cut(s)	421, 585, 720
BstDSI	CCRYGG	3 cut(s)	85, 516, 802
BstF5I	GGATG	1 cut(s)	198
BstFNI	CGCG	1 cut(s)	376
BstHHI	GCGC	1 cut(s)	230
BstKTI	GATC	2 cut(s)	800, 900
BstMAI	GTCTC	1 cut(s)	727
BstMBI	GATC	2 cut(s)	797, 897
BstMWI	GCNNNNNNNGC	5 cut(s)	134, 155, 158, 417, 779
BstNI	CCWGG	2 cut(s)	395, 770
BstNSI	RCATGY	3 cut(s)	15, 415, 711
BstSCI	CCNGG	2 cut(s)	393, 768
BstSFI	CTRYAG	2 cut(s)	786, 999
BstUI	CGCG	1 cut(s)	376
BstV1I	GCAGC	7 cut(s)	136, 139, 142, 145, 318, 474, 766
BstX2I	RGATCY	1 cut(s)	797
BstYI	RGATCY	1 cut(s)	797
BsuI	GTATCC	1 cut(s)	472
BsuRI	GGCC	5 cut(s)	90, 97, 272, 321, 859
BtgI	CCRYGG	3 cut(s)	85, 516, 802
BtgZI	GCGATG	1 cut(s)	391
BtsCI	GGATG	1 cut(s)	198
BtsI	GCAGTG	1 cut(s)	422
BtsIMutI	CAGTG	2 cut(s)	422, 795
Cac8I	GCNNGC	4 cut(s)	9, 135, 413, 926
CaiI	CAGNNNCTG	1 cut(s)	779
CciI	TCATGA	1 cut(s)	937
CfoI	GCGC	1 cut(s)	230
Cfr13I	GGNCC	3 cut(s)	95, 189, 857
Csp6I	GTAC	3 cut(s)	461, 906, 955
CviAII	CATG	6 cut(s)	12, 412, 483, 517, 708, 938
CviQI	GTAC	3 cut(s)	461, 906, 955
DdeI	CTNAG	3 cut(s)	421, 585, 720
DpnI	GATC	2 cut(s)	799, 899
DpnII	GATC	2 cut(s)	797, 897
Eco130I	CCWWGG	3 cut(s)	40, 91, 516
Eco147I	AGGCCT	2 cut(s)	272, 321
Eco47I	GGWCC	1 cut(s)	189
EcoRI	GAATTC	1 cut(s)	426
EcoRII	CCWGG	2 cut(s)	393, 768
EcoT14I	CCWWGG	3 cut(s)	40, 91, 516
ErhI	CCWWGG	3 cut(s)	40, 91, 516
FaeI	CATG	6 cut(s)	15, 415, 486, 520, 711, 941
FalI	AAGNNNNNCTT	2 cut(s)	309, 341
FaqI	GGGAC	2 cut(s)	175, 595
FatI	CATG	6 cut(s)	11, 411, 482, 516, 707, 937
FauI	CCCGC	1 cut(s)	381
FblI	GTMKAC	1 cut(s)	467
Fnu4HI	GCNGC	7 cut(s)	150, 153, 156, 159, 332, 488, 780
FokI	GGATG	1 cut(s)	185
Fsp4HI	GCNGC	7 cut(s)	150, 153, 156, 159, 332, 488, 780
FspBI	CTAG	3 cut(s)	215, 251, 384
GlaI	GCGC	1 cut(s)	229
GluI	GCNGC	7 cut(s)	150, 153, 156, 159, 332, 488, 780
GsuI	CTGGAG	1 cut(s)	831
HaeIII	GGCC	5 cut(s)	90, 97, 272, 321, 859
HapII	CCGG	2 cut(s)	187, 361
HhaI	GCGC	1 cut(s)	230
Hin1II	CATG	6 cut(s)	15, 415, 486, 520, 711, 941
Hin6I	GCGC	1 cut(s)	228
HinP1I	GCGC	1 cut(s)	228
HincII	GTYRAC	1 cut(s)	391
HindII	GTYRAC	1 cut(s)	391
HinfI	GANTC	3 cut(s)	436, 512, 823
HpaII	CCGG	2 cut(s)	187, 361
HphI	GGTGA	1 cut(s)	834
Hpy166II	GTNNAC	4 cut(s)	391, 468, 834, 1030
Hpy188I	TCNGA	1 cut(s)	435
Hpy188III	TCNNGA	4 cut(s)	307, 423, 743, 938
Hpy8I	GTNNAC	4 cut(s)	391, 468, 834, 1030
HpyAV	CCTTC	8 cut(s)	68, 113, 117, 214, 311, 332, 1042, 1063
HpyCH4III	ACNGT	7 cut(s)	33, 465, 539, 686, 790, 886, 905
HpyCH4IV	ACGT	1 cut(s)	839
HpyCH4V	TGCA	6 cut(s)	411, 415, 448, 638, 944, 1040
HpyF10VI	GCNNNNNNNGC	5 cut(s)	134, 155, 158, 417, 779
HpyF3I	CTNAG	3 cut(s)	421, 585, 720
HpySE526I	ACGT	1 cut(s)	839
Hsp92II	CATG	6 cut(s)	15, 415, 486, 520, 711, 941
HspAI	GCGC	1 cut(s)	228
Kzo9I	GATC	2 cut(s)	797, 897
LmnI	GCTCC	3 cut(s)	363, 655, 787
Lsp1109I	GCAGC	7 cut(s)	136, 139, 142, 145, 318, 474, 766
LweI	GCATC	2 cut(s)	681, 931
MaeI	CTAG	3 cut(s)	215, 251, 384
MaeII	ACGT	1 cut(s)	839
MaeIII	GTNAC	4 cut(s)	840, 886, 1003, 1020
MalI	GATC	2 cut(s)	799, 899
MbiI	CCGCTC	1 cut(s)	970
MboI	GATC	2 cut(s)	797, 897
MboII	GAAGA	2 cut(s)	643, 1086
MflI	RGATCY	1 cut(s)	797
MhlI	GDGCHC	1 cut(s)	422
MluCI	AATT	6 cut(s)	45, 426, 554, 565, 589, 1061
MlyI	GAGTC	1 cut(s)	445
MroXI	GAANNNNTTC	1 cut(s)	321
MseI	TTAA	2 cut(s)	123, 327
MspCI	CTTAAG	1 cut(s)	326
MspI	CCGG	2 cut(s)	187, 361
MspR9I	CCNGG	2 cut(s)	395, 770
Mva1269I	GAATGC	2 cut(s)	29, 640
MvaI	CCWGG	2 cut(s)	395, 770
MvnI	CGCG	1 cut(s)	376
MwoI	GCNNNNNNNGC	5 cut(s)	134, 155, 158, 417, 779
NcoI	CCATGG	1 cut(s)	516
NdeII	GATC	2 cut(s)	797, 897
NlaIII	CATG	6 cut(s)	15, 415, 486, 520, 711, 941
NlaIV	GGNNCC	2 cut(s)	191, 858
NmuCI	GTSAC	2 cut(s)	840, 886
NspI	RCATGY	3 cut(s)	15, 415, 711
NspV	TTCGAA	1 cut(s)	629
PaeI	GCATGC	1 cut(s)	415
PagI	TCATGA	1 cut(s)	937
PceI	AGGCCT	2 cut(s)	272, 321
PciI	ACATGT	1 cut(s)	707
PctI	GAATGC	2 cut(s)	29, 640
PdmI	GAANNNNTTC	1 cut(s)	321
PfeI	GAWTC	2 cut(s)	512, 823
PkrI	GCNGC	7 cut(s)	151, 154, 157, 160, 333, 489, 781
PleI	GAGTC	1 cut(s)	444
PpsI	GAGTC	1 cut(s)	444
PscI	ACATGT	1 cut(s)	707
Psp6I	CCWGG	2 cut(s)	393, 768
PspGI	CCWGG	2 cut(s)	393, 768
PspN4I	GGNNCC	2 cut(s)	191, 858
PspPI	GGNCC	3 cut(s)	95, 189, 857
PstNI	CAGNNNCTG	1 cut(s)	779
PsuI	RGATCY	1 cut(s)	797
RsaI	GTAC	3 cut(s)	462, 907, 956
RsaNI	GTAC	3 cut(s)	461, 906, 955
SaqAI	TTAA	2 cut(s)	123, 327
SatI	GCNGC	7 cut(s)	150, 153, 156, 159, 332, 488, 780
Sau3AI	GATC	2 cut(s)	797, 897
Sau96I	GGNCC	3 cut(s)	95, 189, 857
SchI	GAGTC	1 cut(s)	445
ScrFI	CCNGG	2 cut(s)	395, 770
SduI	GDGCHC	1 cut(s)	422
SfaNI	GCATC	2 cut(s)	681, 931
SfcI	CTRYAG	2 cut(s)	786, 999
SfuI	TTCGAA	1 cut(s)	629
SinI	GGWCC	1 cut(s)	189
SmlI	CTYRAG	4 cut(s)	115, 305, 326, 743
SmoI	CTYRAG	4 cut(s)	115, 305, 326, 743
SphI	GCATGC	1 cut(s)	415
Sse9I	AATT	6 cut(s)	45, 426, 554, 565, 589, 1061
SseBI	AGGCCT	2 cut(s)	272, 321
SsiI	CCGC	2 cut(s)	374, 968
SspI	AATATT	1 cut(s)	402
SspMI	CTAG	3 cut(s)	215, 251, 384
StuI	AGGCCT	2 cut(s)	272, 321
StyD4I	CCNGG	2 cut(s)	393, 768
StyI	CCWWGG	3 cut(s)	40, 91, 516
TaaI	ACNGT	7 cut(s)	33, 465, 539, 686, 790, 886, 905
TaiI	ACGT	1 cut(s)	842
TaqI	TCGA	1 cut(s)	629
TasI	AATT	6 cut(s)	45, 426, 554, 565, 589, 1061
TfiI	GAWTC	2 cut(s)	512, 823
Tru1I	TTAA	2 cut(s)	123, 327
Tru9I	TTAA	2 cut(s)	123, 327
TscAI	CASTG	2 cut(s)	422, 795
TseFI	GTSAC	2 cut(s)	840, 886
TseI	GCWGC	7 cut(s)	149, 152, 155, 158, 331, 487, 779
Tsp45I	GTSAC	2 cut(s)	840, 886
TspDTI	ATGAA	7 cut(s)	50, 275, 419, 540, 801, 926, 1082
TspGWI	ACGGA	3 cut(s)	74, 130, 265
TspRI	CASTG	2 cut(s)	422, 795
Vha464I	CTTAAG	1 cut(s)	326
VpaK11BI	GGWCC	1 cut(s)	189
XapI	RAATTY	3 cut(s)	426, 565, 589
XceI	RCATGY	3 cut(s)	15, 415, 711
XmiI	GTMKAC	1 cut(s)	467
XmnI	GAANNNNTTC	1 cut(s)	321
XspI	CTAG	3 cut(s)	215, 251, 384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.