Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0010387

Physical Location & Seq

Genomic Coordinates Reverse (-)

18243568 .. 18248117

Gene Structure 4550 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G242700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGAATGACAAAGCCTCCGTTTCCAAGGAGCTCAACGCCAAACACTCCAAGATTTTAGAAGGTCTTCTTAAGCTGCCGCAAAACAGGGAATGTGCTGATTGTCGGAGCAAAGCCCCACGATGGGCAAGTGTGAACCTGGGAATATTTATTTGCATGCAATGTTCAGGAATTCATCGTAGTCTTGGAGTGCATATTTCAAAGGTACGGTCTACTACTTTGGATACATGGCTGCCAGAACAGGTTGCTTTTATGGAATCTGTGGGTAATGAAAAGGCAAACAGTTATTGGGAAAAAGAATTGCCGGCACATTTTGAAAGAAGCGAGATCAAAAAGTTTATTCGTGCCAAGTATGAAGGAAAAATGTGGGTTGCAAAGAATGCAAAACAACCGGCTCCTAAACTAGTTGAAATGAGCATCAGTTCCAACAAGTTGGTAGAAGGTGGAGCTACAAGCGAAGTTCCGAAGAAAACAAGGAGACATTCTCTTGAAGAAGCAGTACTTTCTAAGCACCTGGGACAAAGTGCTCCTTCAATGGCAAGATCCCGTGGGATTTCTTTAGATTTGAATCATAAGTTTACTACTTCACCTCCGCCAAATGGGCCACCATCTATGATGGAATGTGATACAGCCTCAAACAAGAGCAACGGTACAACAGATCTGTTCAGCTTGCTTTATGTCCCTGATGCAAAACAGGACTATCCCACTCCTCCACGCTGGCAAACTTTTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

ArfGap

Protein Analysis

244

Amino Acids

27.13

Weight (kDa)

9.31

Isoelectric Point (pI)

59.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010387)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17660 AT3G17660 AT3G17660 AT3G17660 AT3G17660
fragaria_vesca	FvH4_5g18300 FvH4_5g18300
malus_domestica	MD05G1272000.v1.1 MD06G1238800.v1.1 MD12G1051500.v1.1
prunus_persica	Prupe.5G242700_v2.0.a1
pyrus_communis	pycom06g21440 pycom14g20610
rosa_chinensis	RchiOBHm_Chr7g0177281
rosa_laevigata	RLG00000005549
rosa_roxburghii	Rroxscaffold_3G00275990
rosa_rugosa	Rorug06G0404400
rosa_samantha	Rh7AG004400 Rh7CG004100 Rh7DG004100
rosa_wichuraiana	Rw7G000360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	209
AciI	CCGC	2 cut(s)	77, 590
AclWI	GGATC	1 cut(s)	534
AcsI	RAATTY	1 cut(s)	168
AfaI	GTAC	3 cut(s)	204, 498, 649
AfiI	CCNNNNNNNGG	3 cut(s)	120, 121, 596
AflII	CTTAAG	1 cut(s)	68
AgsI	TTSAA	6 cut(s)	198, 314, 407, 488, 531, 565
AhlI	ACTAGT	1 cut(s)	400
AjnI	CCWGG	2 cut(s)	135, 510
AluBI	AGCT	4 cut(s)	31, 73, 446, 666
AluI	AGCT	4 cut(s)	31, 73, 446, 666
Alw21I	GWGCWC	2 cut(s)	33, 526
Alw26I	GTCTC	1 cut(s)	469
AlwI	GGATC	1 cut(s)	534
AoxI	GGCC	1 cut(s)	599
ApeKI	GCWGC	2 cut(s)	73, 229
ApoI	RAATTY	1 cut(s)	168
ArsI	GACNNNNNNTTYG	2 cut(s)	191, 223
Asp700I	GAANNNNTTC	1 cut(s)	63
AspS9I	GGNCC	1 cut(s)	599
AsuHPI	GGTGA	1 cut(s)	576
BanII	GRGCYC	1 cut(s)	33
BarI	GAAGNNNNNNTAC	2 cut(s)	480, 512
BbsI	GAAGAC	1 cut(s)	56
Bbv12I	GWGCWC	2 cut(s)	33, 526
BbvI	GCAGC	2 cut(s)	60, 216
BccI	CCATC	3 cut(s)	114, 607, 613
BciT130I	CCWGG	2 cut(s)	137, 512
BciVI	GTATCC	1 cut(s)	214
BcoDI	GTCTC	1 cut(s)	469
BcuI	ACTAGT	1 cut(s)	400
BfaI	CTAG	1 cut(s)	401
BfrI	CTTAAG	1 cut(s)	68
BfuI	GTATCC	1 cut(s)	214
BglI	GCCNNNNNGGC	1 cut(s)	598
BglII	AGATCT	1 cut(s)	655
BisI	GCNGC	3 cut(s)	74, 77, 230
BlsI	GCNGC	3 cut(s)	75, 78, 231
BmcAI	AGTACT	1 cut(s)	498
Bme1390I	CCNGG	2 cut(s)	137, 512
BmgT120I	GGNCC	1 cut(s)	599
BmiI	GGNNCC	1 cut(s)	393
BmrFI	CCNGG	2 cut(s)	137, 512
BmsI	GCATC	2 cut(s)	423, 673
BpiI	GAAGAC	1 cut(s)	56
BplI	GAGNNNNNCTC	2 cut(s)	466, 498
BsaBI	GATNNNNATC	1 cut(s)	564
BsaJI	CCNNGG	4 cut(s)	24, 136, 511, 544
BsaXI	ACNNNNNCTCC	3 cut(s)	29, 571, 601
Bsc4I	CCNNNNNNNGG	3 cut(s)	120, 121, 596
Bse118I	RCCGGY	2 cut(s)	301, 388
Bse3DI	GCAATG	1 cut(s)	164
Bse8I	GATNNNNATC	1 cut(s)	564
BseBI	CCWGG	2 cut(s)	137, 512
BseDI	CCNNGG	4 cut(s)	24, 136, 511, 544
BseJI	GATNNNNATC	1 cut(s)	564
BseLI	CCNNNNNNNGG	3 cut(s)	120, 121, 596
BseMI	GCAATG	1 cut(s)	164
BseRI	GAGGAG	1 cut(s)	696
BseXI	GCAGC	2 cut(s)	60, 216
BshFI	GGCC	1 cut(s)	601
BsiHKAI	GWGCWC	2 cut(s)	33, 526
BsiSI	CCGG	2 cut(s)	302, 389
BslFI	GGGAC	2 cut(s)	528, 662
BslI	CCNNNNNNNGG	3 cut(s)	120, 121, 596
BsmAI	GTCTC	1 cut(s)	469
BsmFI	GGGAC	2 cut(s)	528, 662
BsmI	GAATGC	1 cut(s)	382
BsnI	GGCC	1 cut(s)	601
Bsp1286I	GDGCHC	2 cut(s)	33, 526
Bsp143I	GATC	3 cut(s)	324, 539, 655
BspACI	CCGC	2 cut(s)	77, 590
BspANI	GGCC	1 cut(s)	601
BspLI	GGNNCC	1 cut(s)	393
BspPI	GGATC	1 cut(s)	534
BspTI	CTTAAG	1 cut(s)	68
BsrDI	GCAATG	1 cut(s)	164
BsrFI	RCCGGY	2 cut(s)	301, 388
BssAI	RCCGGY	2 cut(s)	301, 388
BssECI	CCNNGG	4 cut(s)	24, 136, 511, 544
BssMI	GATC	3 cut(s)	324, 539, 655
BssT1I	CCWWGG	1 cut(s)	24
Bst2UI	CCWGG	2 cut(s)	137, 512
Bst4CI	ACNGT	3 cut(s)	207, 281, 647
BstAFI	CTTAAG	1 cut(s)	68
BstAPI	GCANNNNNTGC	1 cut(s)	377
BstC8I	GCNNGC	4 cut(s)	155, 303, 668, 716
BstDEI	CTNAG	1 cut(s)	504
BstDSI	CCRYGG	1 cut(s)	544
BstKTI	GATC	3 cut(s)	327, 542, 658
BstMAI	GTCTC	1 cut(s)	469
BstMBI	GATC	3 cut(s)	324, 539, 655
BstMWI	GCNNNNNNNGC	2 cut(s)	377, 598
BstNI	CCWGG	2 cut(s)	137, 512
BstNSI	RCATGY	1 cut(s)	157
BstSCI	CCNGG	2 cut(s)	135, 510
BstV1I	GCAGC	2 cut(s)	60, 216
BstV2I	GAAGAC	1 cut(s)	56
BstX2I	RGATCY	2 cut(s)	539, 655
BstXI	CCANNNNNNTGG	1 cut(s)	430
BstYI	RGATCY	2 cut(s)	539, 655
BsuI	GTATCC	1 cut(s)	214
BsuRI	GGCC	1 cut(s)	601
BtgI	CCRYGG	1 cut(s)	544
Cac8I	GCNNGC	4 cut(s)	155, 303, 668, 716
Cfr10I	RCCGGY	2 cut(s)	301, 388
Cfr13I	GGNCC	1 cut(s)	599
Csp6I	GTAC	3 cut(s)	203, 497, 648
CviAII	CATG	2 cut(s)	154, 225
CviQI	GTAC	3 cut(s)	203, 497, 648
DdeI	CTNAG	1 cut(s)	504
DpnI	GATC	3 cut(s)	326, 541, 657
DpnII	GATC	3 cut(s)	324, 539, 655
EciI	GGCGGA	1 cut(s)	579
Ecl136II	GAGCTC	1 cut(s)	31
Eco130I	CCWWGG	1 cut(s)	24
Eco24I	GRGCYC	1 cut(s)	33
Eco53kI	GAGCTC	1 cut(s)	31
EcoICRI	GAGCTC	1 cut(s)	31
EcoRI	GAATTC	1 cut(s)	168
EcoRII	CCWGG	2 cut(s)	135, 510
EcoT14I	CCWWGG	1 cut(s)	24
EcoT38I	GRGCYC	1 cut(s)	33
ErhI	CCWWGG	1 cut(s)	24
FaeI	CATG	2 cut(s)	157, 228
FaiI	YATR	8 cut(s)	155, 192, 226, 251, 351, 570, 611, 675
FalI	AAGNNNNNCTT	6 cut(s)	51, 83, 483, 515, 511, 543
FaqI	GGGAC	2 cut(s)	528, 662
FatI	CATG	2 cut(s)	153, 224
FblI	GTMKAC	1 cut(s)	209
Fnu4HI	GCNGC	3 cut(s)	74, 77, 230
FriOI	GRGCYC	1 cut(s)	33
Fsp4HI	GCNGC	3 cut(s)	74, 77, 230
FspBI	CTAG	1 cut(s)	401
GluI	GCNGC	3 cut(s)	74, 77, 230
HaeIII	GGCC	1 cut(s)	601
HapII	CCGG	2 cut(s)	302, 389
Hin1II	CATG	2 cut(s)	157, 228
HinfI	GANTC	2 cut(s)	254, 565
HpaII	CCGG	2 cut(s)	302, 389
HphI	GGTGA	1 cut(s)	576
Hpy166II	GTNNAC	3 cut(s)	133, 210, 576
Hpy188I	TCNGA	2 cut(s)	105, 462
Hpy188III	TCNNGA	2 cut(s)	165, 485
Hpy8I	GTNNAC	3 cut(s)	133, 210, 576
HpyAV	CCTTC	4 cut(s)	53, 347, 431, 537
HpyCH4III	ACNGT	3 cut(s)	207, 281, 647
HpyCH4V	TGCA	6 cut(s)	153, 157, 190, 371, 380, 686
HpyF10VI	GCNNNNNNNGC	2 cut(s)	377, 598
HpyF3I	CTNAG	1 cut(s)	504
Hsp92II	CATG	2 cut(s)	157, 228
KroI	GCCGGC	1 cut(s)	301
KroNI	GCCGGC	1 cut(s)	303
Kzo9I	GATC	3 cut(s)	324, 539, 655
LmnI	GCTCC	5 cut(s)	28, 105, 397, 443, 529
Lsp1109I	GCAGC	2 cut(s)	60, 216
LweI	GCATC	2 cut(s)	423, 673
MaeI	CTAG	1 cut(s)	401
MalI	GATC	3 cut(s)	326, 541, 657
MboI	GATC	3 cut(s)	324, 539, 655
MboII	GAAGA	3 cut(s)	56, 475, 500
MflI	RGATCY	2 cut(s)	539, 655
MhlI	GDGCHC	2 cut(s)	33, 526
MluCI	AATT	2 cut(s)	168, 296
MmeI	TCCRAC	2 cut(s)	83, 447
MnlI	CCTC	4 cut(s)	25, 597, 640, 717
MroNI	GCCGGC	1 cut(s)	301
MroXI	GAANNNNTTC	1 cut(s)	63
MseI	TTAA	1 cut(s)	69
MspCI	CTTAAG	1 cut(s)	68
MspI	CCGG	2 cut(s)	302, 389
MspR9I	CCNGG	2 cut(s)	137, 512
Mva1269I	GAATGC	1 cut(s)	382
MvaI	CCWGG	2 cut(s)	137, 512
MwoI	GCNNNNNNNGC	2 cut(s)	377, 598
NaeI	GCCGGC	1 cut(s)	303
NdeII	GATC	3 cut(s)	324, 539, 655
NgoMIV	GCCGGC	1 cut(s)	301
NlaIII	CATG	2 cut(s)	157, 228
NlaIV	GGNNCC	1 cut(s)	393
NspI	RCATGY	1 cut(s)	157
PaeI	GCATGC	1 cut(s)	157
PctI	GAATGC	1 cut(s)	382
PdiI	GCCGGC	1 cut(s)	303
PdmI	GAANNNNTTC	1 cut(s)	63
PfeI	GAWTC	2 cut(s)	254, 565
PkrI	GCNGC	3 cut(s)	75, 78, 231
Psp124BI	GAGCTC	1 cut(s)	33
Psp6I	CCWGG	2 cut(s)	135, 510
PspGI	CCWGG	2 cut(s)	135, 510
PspN4I	GGNNCC	1 cut(s)	393
PspPI	GGNCC	1 cut(s)	599
PsuI	RGATCY	2 cut(s)	539, 655
RsaI	GTAC	3 cut(s)	204, 498, 649
RsaNI	GTAC	3 cut(s)	203, 497, 648
SacI	GAGCTC	1 cut(s)	33
SaqAI	TTAA	1 cut(s)	69
SatI	GCNGC	3 cut(s)	74, 77, 230
Sau3AI	GATC	3 cut(s)	324, 539, 655
Sau96I	GGNCC	1 cut(s)	599
ScaI	AGTACT	1 cut(s)	498
ScrFI	CCNGG	2 cut(s)	137, 512
SduI	GDGCHC	2 cut(s)	33, 526
SfaNI	GCATC	2 cut(s)	423, 673
SmlI	CTYRAG	1 cut(s)	68
SmoI	CTYRAG	1 cut(s)	68
SpeI	ACTAGT	1 cut(s)	400
SphI	GCATGC	1 cut(s)	157
Sse9I	AATT	2 cut(s)	168, 296
SsiI	CCGC	2 cut(s)	77, 590
SspI	AATATT	1 cut(s)	144
SspMI	CTAG	1 cut(s)	401
SstI	GAGCTC	1 cut(s)	33
StyD4I	CCNGG	2 cut(s)	135, 510
StyI	CCWWGG	1 cut(s)	24
TaaI	ACNGT	3 cut(s)	207, 281, 647
TasI	AATT	2 cut(s)	168, 296
TatI	WGTACW	1 cut(s)	496
TauI	GCSGC	1 cut(s)	79
TfiI	GAWTC	2 cut(s)	254, 565
Tru1I	TTAA	1 cut(s)	69
Tru9I	TTAA	1 cut(s)	69
TseI	GCWGC	2 cut(s)	73, 229
TspDTI	ATGAA	4 cut(s)	17, 161, 282, 366
TspGWI	ACGGA	1 cut(s)	7
Vha464I	CTTAAG	1 cut(s)	68
XapI	RAATTY	1 cut(s)	168
XceI	RCATGY	1 cut(s)	157
XmiI	GTMKAC	1 cut(s)	209
XmnI	GAANNNNTTC	1 cut(s)	63
XspI	CTAG	1 cut(s)	401
ZrmI	AGTACT	1 cut(s)	498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.