Rroxscaffold_3G00275990

ADP-ribosylation factor GTPase-activating protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0010387
Physical Location & Seq
Reverse (-)
67296561 .. 67301050
4490 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00275990.1

Sequence Viewer

Length: 729 bp
ATGAGCAAGGCCTCCATTTCCAAGGAGCTCAACGACAAGCACACCAAGATTTTAGAAGGTCTTCTTAAGCTGCCAGAAAACCGGGAATGTGCTGATTGTCGGAGCAAAGCCCCACGATGGGCAAGTGTGAATCTTGGAATATTTATTTGCATGCAATGTTCAGGAATTCATCGGAGCCTTGGAGTGCACATTTCAAAGGTCCGGTCTACTACTTTGGATACATGGCTGCCAGAGCAGATTGCTTTTATGGAATCTTTGGGTAATGAAAAGGCAAACAATTATTGGGAAAAAAAGTTGCCACTAAATGCAGACAGAAGTGCGATCGAGAAGTTTATTCGTGCCAAGTATGAGGGAAAAAAGTGGGTTGCAAAGGATGCAAAACAGCCCGCTCCTGAACCAGTTGAAATGGGCACCAGTTCCAACAAGTTGGTAGAAGGTGGAGCCACCAGTGGCAAGAAACTAAGGAGGCATTCTCTTGAGGAAGCAATACTTCCTACACATCTTTCAGAAGATGCTCCTCCAGTAGCAAGACCCCGCACGGGTTCTTTAGATTTGAATCACATTTATACTAATTCACCTCTACCAAAGTGGTCAGCACCGATGACAGATTGCGATACAGCAACAAGAAAGAACAACAGTGCAACAGATCTCTTCAATTTGCTTGATGTCCATGATGCAAAACAGGAATGTCATATTGTACCTCCTGCACGCTGGGCAACTTTTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04144 map04144
Pfam Domains
Protein Families
ArfGap

Protein Analysis

242

Amino Acids

27.02

Weight (kDa)

8.83

Isoelectric Point (pI)

60.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ArfGap PF01412 16 - 124 2.5e-43 Putative GTPase activating protein for Arf
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 410
AccBSI CCGCTC 1 cut(s) 389
AccI GTMKAC 1 cut(s) 206
AciI CCGC 2 cut(s) 387, 535
AcsI RAATTY 1 cut(s) 165
AfaI GTAC 1 cut(s) 699
AfiI CCNNNNNNNGG 3 cut(s) 117, 118, 539
AflII CTTAAG 1 cut(s) 65
AgsI TTSAA 4 cut(s) 195, 404, 556, 655
AluBI AGCT 2 cut(s) 28, 70
AluI AGCT 2 cut(s) 28, 70
Alw21I GWGCWC 2 cut(s) 30, 189
Alw44I GTGCAC 1 cut(s) 185
AoxI GGCC 1 cut(s) 9
ApaLI GTGCAC 1 cut(s) 185
ApeKI GCWGC 2 cut(s) 70, 226
ApoI RAATTY 1 cut(s) 165
ArsI GACNNNNNNTTYG 2 cut(s) 188, 220
Asp700I GAANNNNTTC 1 cut(s) 60
AspS9I GGNCC 1 cut(s) 199
AsuC2I CCSGG 1 cut(s) 83
AsuHPI GGTGA 1 cut(s) 567
AvaII GGWCC 1 cut(s) 199
BaeGI GKGCMC 2 cut(s) 189, 413
BanI GGYRCC 1 cut(s) 410
BanII GRGCYC 1 cut(s) 30
BbsI GAAGAC 1 cut(s) 53
Bbv12I GWGCWC 2 cut(s) 30, 189
BbvI GCAGC 2 cut(s) 57, 213
BccI CCATC 1 cut(s) 111
BciVI GTATCC 1 cut(s) 211
BcnI CCSGG 1 cut(s) 83
BfrI CTTAAG 1 cut(s) 65
BfuI GTATCC 1 cut(s) 211
BglII AGATCT 1 cut(s) 646
BisI GCNGC 2 cut(s) 71, 227
BlsI GCNGC 2 cut(s) 72, 228
Bme1390I CCNGG 1 cut(s) 83
Bme18I GGWCC 1 cut(s) 199
BmgT120I GGNCC 1 cut(s) 199
BmiI GGNNCC 3 cut(s) 176, 412, 442
BmrFI CCNGG 1 cut(s) 83
BmsI GCATC 3 cut(s) 364, 502, 664
BpiI GAAGAC 1 cut(s) 53
BplI GAGNNNNNCTC 2 cut(s) 457, 489
BpmI CTGGAG 1 cut(s) 504
BpuEI CTTGAG 1 cut(s) 497
BpuMI CCSGG 1 cut(s) 83
BsaBI GATNNNNATC 1 cut(s) 555
BsaJI CCNNGG 2 cut(s) 21, 178
BsaWI WCCGGW 1 cut(s) 201
Bsc4I CCNNNNNNNGG 3 cut(s) 117, 118, 539
Bse1I ACTGG 4 cut(s) 398, 414, 447, 521
Bse3DI GCAATG 1 cut(s) 161
Bse8I GATNNNNATC 1 cut(s) 555
BseDI CCNNGG 2 cut(s) 21, 178
BseGI GGATG 1 cut(s) 379
BseJI GATNNNNATC 1 cut(s) 555
BseLI CCNNNNNNNGG 3 cut(s) 117, 118, 539
BseMI GCAATG 1 cut(s) 161
BseNI ACTGG 4 cut(s) 398, 414, 447, 521
BseRI GAGGAG 1 cut(s) 507
BseSI GKGCMC 2 cut(s) 189, 413
BseXI GCAGC 2 cut(s) 57, 213
BseYI CCCAGC 1 cut(s) 711
BsgI GTGCAG 1 cut(s) 690
Bsh1285I CGRYCG 1 cut(s) 324
BshFI GGCC 1 cut(s) 11
BshNI GGYRCC 1 cut(s) 410
BsiEI CGRYCG 1 cut(s) 324
BsiHKAI GWGCWC 2 cut(s) 30, 189
BsiSI CCGG 2 cut(s) 82, 202
BslI CCNNNNNNNGG 3 cut(s) 117, 118, 539
BsmI GAATGC 1 cut(s) 469
BsnI GGCC 1 cut(s) 11
Bsp1286I GDGCHC 3 cut(s) 30, 189, 413
Bsp143I GATC 2 cut(s) 321, 646
BspACI CCGC 2 cut(s) 387, 535
BspANI GGCC 1 cut(s) 11
BspLI GGNNCC 3 cut(s) 176, 412, 442
BspT107I GGYRCC 1 cut(s) 410
BspTI CTTAAG 1 cut(s) 65
BsrBI CCGCTC 1 cut(s) 389
BsrDI GCAATG 1 cut(s) 161
BsrI ACTGG 4 cut(s) 398, 414, 447, 521
BssECI CCNNGG 2 cut(s) 21, 178
BssMI GATC 2 cut(s) 321, 646
BssT1I CCWWGG 2 cut(s) 21, 178
Bst4CI ACNGT 1 cut(s) 638
Bst6I CTCTTC 1 cut(s) 656
BstAFI CTTAAG 1 cut(s) 65
BstAPI GCANNNNNTGC 1 cut(s) 374
BstC8I GCNNGC 3 cut(s) 152, 387, 709
BstDEI CTNAG 1 cut(s) 461
BstF5I GGATG 1 cut(s) 379
BstKTI GATC 2 cut(s) 324, 649
BstMBI GATC 2 cut(s) 321, 646
BstMCI CGRYCG 1 cut(s) 324
BstMWI GCNNNNNNNGC 3 cut(s) 232, 374, 713
BstNSI RCATGY 1 cut(s) 154
BstSCI CCNGG 1 cut(s) 81
BstSLI GKGCMC 2 cut(s) 189, 413
BstV1I GCAGC 2 cut(s) 57, 213
BstV2I GAAGAC 1 cut(s) 53
BstX2I RGATCY 1 cut(s) 646
BstXI CCANNNNNNTGG 1 cut(s) 427
BstYI RGATCY 1 cut(s) 646
BsuI GTATCC 1 cut(s) 211
BsuRI GGCC 1 cut(s) 11
BtsCI GGATG 1 cut(s) 379
BtsIMutI CAGTG 2 cut(s) 454, 643
Cac8I GCNNGC 3 cut(s) 152, 387, 709
Cfr13I GGNCC 1 cut(s) 199
Csp6I GTAC 1 cut(s) 698
CviAII CATG 3 cut(s) 151, 222, 671
CviJI RGCY 8 cut(s) 11, 28, 70, 110, 177, 226, 385, 443
CviKI_1 RGCY 8 cut(s) 11, 28, 70, 110, 177, 226, 385, 443
CviQI GTAC 1 cut(s) 698
DdeI CTNAG 1 cut(s) 461
DpnI GATC 2 cut(s) 323, 648
DpnII GATC 2 cut(s) 321, 646
Eam1104I CTCTTC 1 cut(s) 656
EarI CTCTTC 1 cut(s) 656
Ecl136II GAGCTC 1 cut(s) 28
Eco130I CCWWGG 2 cut(s) 21, 178
Eco147I AGGCCT 1 cut(s) 11
Eco24I GRGCYC 1 cut(s) 30
Eco47I GGWCC 1 cut(s) 199
Eco53kI GAGCTC 1 cut(s) 28
EcoICRI GAGCTC 1 cut(s) 28
EcoRI GAATTC 1 cut(s) 165
EcoT14I CCWWGG 2 cut(s) 21, 178
EcoT38I GRGCYC 1 cut(s) 30
ErhI CCWWGG 2 cut(s) 21, 178
FaeI CATG 3 cut(s) 154, 225, 674
FaiI YATR 7 cut(s) 152, 223, 248, 348, 567, 672, 693
FalI AAGNNNNNCTT 4 cut(s) 48, 80, 474, 506
FatI CATG 3 cut(s) 150, 221, 670
FauI CCCGC 2 cut(s) 394, 542
FblI GTMKAC 1 cut(s) 206
Fnu4HI GCNGC 2 cut(s) 71, 227
FokI GGATG 1 cut(s) 386
FriOI GRGCYC 1 cut(s) 30
Fsp4HI GCNGC 2 cut(s) 71, 227
GluI GCNGC 2 cut(s) 71, 227
GsaI CCCAGC 1 cut(s) 715
GsuI CTGGAG 1 cut(s) 504
HaeIII GGCC 1 cut(s) 11
HapII CCGG 2 cut(s) 82, 202
Hin1II CATG 3 cut(s) 154, 225, 674
HinfI GANTC 3 cut(s) 130, 251, 556
HpaII CCGG 2 cut(s) 82, 202
HphI GGTGA 1 cut(s) 567
Hpy166II GTNNAC 2 cut(s) 187, 207
Hpy188I TCNGA 3 cut(s) 102, 174, 508
Hpy188III TCNNGA 4 cut(s) 162, 325, 392, 476
Hpy8I GTNNAC 2 cut(s) 187, 207
HpyAV CCTTC 2 cut(s) 50, 428
HpyCH4III ACNGT 1 cut(s) 638
HpyCH4V TGCA 9 cut(s) 150, 154, 187, 308, 368, 377, 641, 677, 707
HpyF10VI GCNNNNNNNGC 3 cut(s) 232, 374, 713
HpyF3I CTNAG 1 cut(s) 461
Hsp92II CATG 3 cut(s) 154, 225, 674
Kzo9I GATC 2 cut(s) 321, 646
LmnI GCTCC 6 cut(s) 25, 102, 174, 394, 440, 520
Lsp1109I GCAGC 2 cut(s) 57, 213
LweI GCATC 3 cut(s) 364, 502, 664
MalI GATC 2 cut(s) 323, 648
MbiI CCGCTC 1 cut(s) 389
MboI GATC 2 cut(s) 321, 646
MboII GAAGA 3 cut(s) 53, 521, 643
MflI RGATCY 1 cut(s) 646
MhlI GDGCHC 3 cut(s) 30, 189, 413
MluCI AATT 4 cut(s) 165, 277, 571, 655
MmeI TCCRAC 2 cut(s) 80, 444
MnlI CCTC 7 cut(s) 22, 343, 459, 472, 528, 588, 711
MroXI GAANNNNTTC 1 cut(s) 60
MseI TTAA 1 cut(s) 66
MspCI CTTAAG 1 cut(s) 65
MspI CCGG 2 cut(s) 82, 202
MspR9I CCNGG 1 cut(s) 83
Mva1269I GAATGC 1 cut(s) 469
MwoI GCNNNNNNNGC 3 cut(s) 232, 374, 713
NciI CCSGG 1 cut(s) 83
NdeII GATC 2 cut(s) 321, 646
NlaIII CATG 3 cut(s) 154, 225, 674
NlaIV GGNNCC 3 cut(s) 176, 412, 442
NspI RCATGY 1 cut(s) 154
PaeI GCATGC 1 cut(s) 154
PceI AGGCCT 1 cut(s) 11
PctI GAATGC 1 cut(s) 469
PdmI GAANNNNTTC 1 cut(s) 60
PfeI GAWTC 3 cut(s) 130, 251, 556
PkrI GCNGC 2 cut(s) 72, 228
Ple19I CGATCG 1 cut(s) 324
Psp124BI GAGCTC 1 cut(s) 30
PspFI CCCAGC 1 cut(s) 711
PspN4I GGNNCC 3 cut(s) 176, 412, 442
PspPI GGNCC 1 cut(s) 199
PsuI RGATCY 1 cut(s) 646
PvuI CGATCG 1 cut(s) 324
RsaI GTAC 1 cut(s) 699
RsaNI GTAC 1 cut(s) 698
SacI GAGCTC 1 cut(s) 30
SaqAI TTAA 1 cut(s) 66
SatI GCNGC 2 cut(s) 71, 227
Sau3AI GATC 2 cut(s) 321, 646
Sau96I GGNCC 1 cut(s) 199
ScrFI CCNGG 1 cut(s) 83
SduI GDGCHC 3 cut(s) 30, 189, 413
SetI ASST 7 cut(s) 30, 61, 72, 201, 439, 580, 703
SfaNI GCATC 3 cut(s) 364, 502, 664
SinI GGWCC 1 cut(s) 199
SmlI CTYRAG 2 cut(s) 65, 476
SmoI CTYRAG 2 cut(s) 65, 476
SphI GCATGC 1 cut(s) 154
Sse9I AATT 4 cut(s) 165, 277, 571, 655
SseBI AGGCCT 1 cut(s) 11
SsiI CCGC 2 cut(s) 387, 535
SspI AATATT 1 cut(s) 141
SstI GAGCTC 1 cut(s) 30
StuI AGGCCT 1 cut(s) 11
StyD4I CCNGG 1 cut(s) 81
StyI CCWWGG 2 cut(s) 21, 178
TaaI ACNGT 1 cut(s) 638
TaqI TCGA 1 cut(s) 324
TasI AATT 4 cut(s) 165, 277, 571, 655
TfiI GAWTC 3 cut(s) 130, 251, 556
Tru1I TTAA 1 cut(s) 66
Tru9I TTAA 1 cut(s) 66
TscAI CASTG 2 cut(s) 454, 643
TseI GCWGC 2 cut(s) 70, 226
TspDTI ATGAA 2 cut(s) 158, 279
TspRI CASTG 2 cut(s) 454, 643
Vha464I CTTAAG 1 cut(s) 65
VneI GTGCAC 1 cut(s) 185
VpaK11BI GGWCC 1 cut(s) 199
XapI RAATTY 1 cut(s) 165
XceI RCATGY 1 cut(s) 154
XmiI GTMKAC 1 cut(s) 206
XmnI GAANNNNTTC 1 cut(s) 60
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.