Rorug06G0404400

ADP-ribosylation factor GTPase-activating protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0010387
Physical Location & Seq
Reverse (-)
54807348 .. 54810393
3046 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0404400.1

Sequence Viewer

Length: 1104 bp
ATGGCGATCCGCGTCACCCTAGGGTTTTCCGGCTACGTAGCCCAAAACCTAGCCTCCTCCGCCAGTATTCGCGCCAGTAATTGCCGCGGCGTCCACGAATGCTGGGTTAGGTCTCTGCTGTTCGGCACCAACCAGAAGGCCGATCTCGACCCCTCCGGCACCGTCCCCAGTTACCGGTCCAAATTCGCCGCCAGGTCCAAGGCTCCGACCTCCCTCTACGGCGCCCTTGCCGAAGAATTCCTCTGCCAAAGCTCCAAGACCCCGATTATGTCCACCTTGATCTCCGTTTTGAAGTCAACGGCCTCCGTCACCGGTCCTTCTCCGGCTTCCCCGTCTCTTGGCCTCGGAATCTCGCCGGTCAAACCCGGTTCGATCATGCCGTTCTTGCAGGCCTCCAAGTGGCTTCCCTGCAACGAATCTGTTCCGGCGAAATTGGTGAGCGAGATGGACAGAAAACTGCGTTTGGATGATGATGAGGTGGTGGCCTCTGCCTCGGAGTTGAGTAAGAATGGATTGCAGAGGAGCGGTTGGTTATCGCGCCTCTTGAGTTCTTGCTCCGAAGACGCAAAGGCAGTCTTCACTGCTGTGACTGTCAGCGTTCTGTTCCGCTCATCCTTGGCCGAGCCCAGGTCCATTCCTTCCACCTCTATGTACCCTACTCTCGATGTGGGTGATCGTGTTCTAGCTGAGAAGGTTTCATATCTGTTTAGAAAGCCTGAGGTTTCAGATATAGTAATTTTCAAGGCACCTCCAATCTTGCAGGAGATAGGCTTTAGCTCGGGCGATGTATTCATAAAAAGAATTGTGGCCAAGGCTGGAGATTATGTTGAGGTACATGATGGGAAATTGTTGGTGAACGGTGAAATTCAAAATGAAAATTACATATTGGAGCCTCTTGCCTATGAAATGGAACCAATTCTCATTCCAGAAGGCTATGTCTTTGTGATGGGGGACAACCGCAACAACAGTTTCGACTCTCATAACTGGGGTCCCCTTCCTGTAAAAAACATTCTTGGAAGATCCGTGTTTCGCTACTGGCCTCCCTCCAAAGTGTCCGACATTATGCATGAACCACAGGTAGAAAAATCTGTGGCAATTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04144 map04144
Pfam Domains
Protein Families
ArfGap

Protein Analysis

367

Amino Acids

39.95

Weight (kDa)

7.6

Isoelectric Point (pI)

51.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S26 PF10502 189 - 346 2.4e-43 Signal peptidase, peptidase S26
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 4 cut(s) 125, 158, 221, 745
AccBSI CCGCTC 2 cut(s) 525, 609
AccII CGCG 4 cut(s) 12, 72, 87, 538
AciI CCGC 8 cut(s) 10, 60, 85, 87, 189, 525, 607, 958
AclWI GGATC 1 cut(s) 1014
AcoI YGGCCR 2 cut(s) 618, 807
AcsI RAATTY 3 cut(s) 182, 236, 864
AcyI GRCGYC 2 cut(s) 90, 222
AfaI GTAC 2 cut(s) 653, 834
AfiI CCNNNNNNNGG 4 cut(s) 174, 338, 399, 627
AgeI ACCGGT 2 cut(s) 174, 311
AgsI TTSAA 3 cut(s) 292, 742, 869
AjnI CCWGG 2 cut(s) 191, 626
AleI CACNNNNGTG 1 cut(s) 584
AluBI AGCT 3 cut(s) 252, 686, 777
AluI AGCT 3 cut(s) 252, 686, 777
Alw26I GTCTC 2 cut(s) 117, 339
AlwI GGATC 1 cut(s) 1014
Ama87I CYCGRG 1 cut(s) 778
AoxI GGCC 8 cut(s) 138, 300, 340, 390, 483, 618, 807, 1037
ApoI RAATTY 3 cut(s) 182, 236, 864
AsiGI ACCGGT 2 cut(s) 174, 311
Asp700I GAANNNNTTC 2 cut(s) 420, 915
AspA2I CCTAGG 1 cut(s) 19
AspLEI GCGC 3 cut(s) 74, 224, 540
AspS9I GGNCC 5 cut(s) 177, 195, 314, 630, 989
AsuC2I CCSGG 1 cut(s) 366
AsuHPI GGTGA 6 cut(s) 7, 301, 448, 683, 865, 872
AvaI CYCGRG 1 cut(s) 778
AvaII GGWCC 5 cut(s) 177, 195, 314, 630, 989
AvrII CCTAGG 1 cut(s) 19
AxyI CCTNAGG 1 cut(s) 717
BalI TGGCCA 1 cut(s) 809
BanI GGYRCC 4 cut(s) 125, 158, 221, 745
BanII GRGCYC 1 cut(s) 627
BbsI GAAGAC 2 cut(s) 567, 568
BccI CCATC 3 cut(s) 439, 833, 940
BceAI ACGGC 3 cut(s) 235, 315, 364
BciT130I CCWGG 2 cut(s) 193, 628
BcnI CCSGG 1 cut(s) 366
BcoDI GTCTC 2 cut(s) 117, 339
BfaI CTAG 3 cut(s) 20, 50, 683
BfoI RGCGCY 1 cut(s) 225
BisI GCNGC 3 cut(s) 85, 88, 189
BlnI CCTAGG 1 cut(s) 19
BlsI GCNGC 3 cut(s) 86, 89, 190
Bme1390I CCNGG 3 cut(s) 193, 366, 628
Bme18I GGWCC 5 cut(s) 177, 195, 314, 630, 989
BmeT110I CYCGRG 1 cut(s) 778
BmgT120I GGNCC 5 cut(s) 177, 195, 314, 630, 989
BmiI GGNNCC 9 cut(s) 127, 160, 204, 223, 747, 891, 912, 990, 991
BmrFI CCNGG 3 cut(s) 193, 366, 628
BmrI ACTGGG 2 cut(s) 162, 994
BmuI ACTGGG 2 cut(s) 162, 994
BpiI GAAGAC 2 cut(s) 567, 568
BpmI CTGGAG 1 cut(s) 837
BpuEI CTTGAG 1 cut(s) 565
BpuMI CCSGG 1 cut(s) 366
BsaAI YACGTR 1 cut(s) 37
BsaHI GRCGYC 2 cut(s) 90, 222
BsaI GGTCTC 1 cut(s) 117
BsaJI CCNNGG 8 cut(s) 19, 85, 198, 343, 492, 615, 626, 810
BsaWI WCCGGW 2 cut(s) 174, 311
BsaXI ACNNNNNCTCC 4 cut(s) 38, 68, 810, 840
Bsc4I CCNNNNNNNGG 4 cut(s) 174, 338, 399, 627
Bse118I RCCGGY 3 cut(s) 174, 311, 355
Bse1I ACTGG 5 cut(s) 63, 75, 168, 989, 1040
Bse21I CCTNAGG 1 cut(s) 717
BseBI CCWGG 2 cut(s) 193, 628
BseDI CCNNGG 8 cut(s) 19, 85, 198, 343, 492, 615, 626, 810
BseGI GGATG 2 cut(s) 472, 611
BseLI CCNNNNNNNGG 4 cut(s) 174, 338, 399, 627
BseMII CTCAG 2 cut(s) 678, 708
BseNI ACTGG 5 cut(s) 63, 75, 168, 989, 1040
BseRI GAGGAG 2 cut(s) 46, 535
BseYI CCCAGC 1 cut(s) 102
Bsh1236I CGCG 4 cut(s) 12, 72, 87, 538
BshFI GGCC 8 cut(s) 140, 302, 342, 392, 485, 620, 809, 1039
BshNI GGYRCC 4 cut(s) 125, 158, 221, 745
BshTI ACCGGT 2 cut(s) 174, 311
BsiHKCI CYCGRG 1 cut(s) 778
BsiSI CCGG 8 cut(s) 30, 156, 175, 312, 323, 356, 366, 425
BslFI GGGAC 3 cut(s) 149, 965, 975
BslI CCNNNNNNNGG 4 cut(s) 174, 338, 399, 627
BsmAI GTCTC 2 cut(s) 117, 339
BsmBI CGTCTC 1 cut(s) 339
BsmFI GGGAC 3 cut(s) 149, 965, 975
BsmI GAATGC 1 cut(s) 104
BsnI GGCC 8 cut(s) 140, 302, 342, 392, 485, 620, 809, 1039
Bso31I GGTCTC 1 cut(s) 117
BsoBI CYCGRG 1 cut(s) 778
Bsp1286I GDGCHC 1 cut(s) 627
Bsp143I GATC 6 cut(s) 6, 142, 279, 372, 673, 1019
BspACI CCGC 8 cut(s) 10, 60, 85, 87, 189, 525, 607, 958
BspANI GGCC 8 cut(s) 140, 302, 342, 392, 485, 620, 809, 1039
BspCNI CTCAG 2 cut(s) 679, 709
BspFNI CGCG 4 cut(s) 12, 72, 87, 538
BspLI GGNNCC 9 cut(s) 127, 160, 204, 223, 747, 891, 912, 990, 991
BspPI GGATC 1 cut(s) 1014
BspT107I GGYRCC 4 cut(s) 125, 158, 221, 745
BspTNI GGTCTC 1 cut(s) 117
BsrBI CCGCTC 2 cut(s) 525, 609
BsrFI RCCGGY 3 cut(s) 174, 311, 355
BsrI ACTGG 5 cut(s) 63, 75, 168, 989, 1040
BssAI RCCGGY 3 cut(s) 174, 311, 355
BssECI CCNNGG 8 cut(s) 19, 85, 198, 343, 492, 615, 626, 810
BssMI GATC 6 cut(s) 6, 142, 279, 372, 673, 1019
BssNI GRCGYC 2 cut(s) 90, 222
BssT1I CCWWGG 4 cut(s) 19, 198, 615, 810
Bst2UI CCWGG 2 cut(s) 193, 628
Bst4CI ACNGT 4 cut(s) 163, 592, 860, 968
BstACI GRCGYC 2 cut(s) 90, 222
BstBAI YACGTR 1 cut(s) 37
BstC8I GCNNGC 1 cut(s) 390
BstDEI CTNAG 2 cut(s) 687, 717
BstDSI CCRYGG 1 cut(s) 85
BstF5I GGATG 2 cut(s) 472, 611
BstFNI CGCG 4 cut(s) 12, 72, 87, 538
BstH2I RGCGCY 1 cut(s) 225
BstHHI GCGC 3 cut(s) 74, 224, 540
BstKTI GATC 6 cut(s) 9, 145, 282, 375, 676, 1022
BstMAI GTCTC 2 cut(s) 117, 339
BstMBI GATC 6 cut(s) 6, 142, 279, 372, 673, 1019
BstMWI GCNNNNNNNGC 2 cut(s) 59, 385
BstNI CCWGG 2 cut(s) 193, 628
BstSCI CCNGG 3 cut(s) 191, 364, 626
BstSNI TACGTA 1 cut(s) 37
BstUI CGCG 4 cut(s) 12, 72, 87, 538
BstV2I GAAGAC 2 cut(s) 567, 568
BstX2I RGATCY 1 cut(s) 1019
BstYI RGATCY 1 cut(s) 1019
Bsu36I CCTNAGG 1 cut(s) 717
BsuRI GGCC 8 cut(s) 140, 302, 342, 392, 485, 620, 809, 1039
BtgI CCRYGG 1 cut(s) 85
BtgZI GCGATG 1 cut(s) 798
BtsCI GGATG 2 cut(s) 472, 611
BtsI GCAGTG 1 cut(s) 579
BtsIMutI CAGTG 1 cut(s) 579
Cac8I GCNNGC 1 cut(s) 390
CfoI GCGC 3 cut(s) 74, 224, 540
Cfr10I RCCGGY 3 cut(s) 174, 311, 355
Cfr13I GGNCC 5 cut(s) 177, 195, 314, 630, 989
Cfr42I CCGCGG 1 cut(s) 88
CseI GACGC 2 cut(s) 79, 572
Csp6I GTAC 2 cut(s) 652, 833
CspAI ACCGGT 2 cut(s) 174, 311
CviAII CATG 3 cut(s) 376, 836, 1067
CviQI GTAC 2 cut(s) 652, 833
DdeI CTNAG 2 cut(s) 687, 717
DinI GGCGCC 1 cut(s) 223
DpnI GATC 6 cut(s) 8, 144, 281, 374, 675, 1021
DpnII GATC 6 cut(s) 6, 142, 279, 372, 673, 1019
EaeI YGGCCR 2 cut(s) 618, 807
EciI GGCGGA 1 cut(s) 49
Eco105I TACGTA 1 cut(s) 37
Eco130I CCWWGG 4 cut(s) 19, 198, 615, 810
Eco147I AGGCCT 1 cut(s) 392
Eco24I GRGCYC 1 cut(s) 627
Eco31I GGTCTC 1 cut(s) 117
Eco47I GGWCC 5 cut(s) 177, 195, 314, 630, 989
Eco81I CCTNAGG 1 cut(s) 717
Eco88I CYCGRG 1 cut(s) 778
EcoO109I RGGNCCY 1 cut(s) 989
EcoRI GAATTC 1 cut(s) 236
EcoRII CCWGG 2 cut(s) 191, 626
EcoT14I CCWWGG 4 cut(s) 19, 198, 615, 810
EcoT22I ATGCAT 1 cut(s) 1068
EcoT38I GRGCYC 1 cut(s) 627
EgeI GGCGCC 1 cut(s) 223
EheI GGCGCC 1 cut(s) 223
ErhI CCWWGG 4 cut(s) 19, 198, 615, 810
Esp3I CGTCTC 1 cut(s) 339
FaeI CATG 3 cut(s) 379, 839, 1070
FalI AAGNNNNNCTT 2 cut(s) 560, 592
FaqI GGGAC 3 cut(s) 149, 965, 975
FatI CATG 3 cut(s) 375, 835, 1066
Fnu4HI GCNGC 3 cut(s) 85, 88, 189
FokI GGATG 2 cut(s) 479, 598
FriOI GRGCYC 1 cut(s) 627
Fsp4HI GCNGC 3 cut(s) 85, 88, 189
FspBI CTAG 3 cut(s) 20, 50, 683
GlaI GCGC 3 cut(s) 73, 223, 539
GluI GCNGC 3 cut(s) 85, 88, 189
GsaI CCCAGC 1 cut(s) 106
GsuI CTGGAG 1 cut(s) 837
HaeII RGCGCY 1 cut(s) 225
HaeIII GGCC 8 cut(s) 140, 302, 342, 392, 485, 620, 809, 1039
HapII CCGG 8 cut(s) 30, 156, 175, 312, 323, 356, 366, 425
HgaI GACGC 2 cut(s) 79, 572
HhaI GCGC 3 cut(s) 74, 224, 540
Hin1I GRCGYC 2 cut(s) 90, 222
Hin1II CATG 3 cut(s) 379, 839, 1070
Hin6I GCGC 3 cut(s) 72, 222, 538
HinP1I GCGC 3 cut(s) 72, 222, 538
HincII GTYRAC 1 cut(s) 297
HindII GTYRAC 1 cut(s) 297
HinfI GANTC 3 cut(s) 348, 416, 974
HpaII CCGG 8 cut(s) 30, 156, 175, 312, 323, 356, 366, 425
HphI GGTGA 6 cut(s) 7, 301, 448, 683, 865, 872
Hpy166II GTNNAC 4 cut(s) 94, 273, 297, 856
Hpy188I TCNGA 6 cut(s) 207, 347, 496, 559, 727, 1057
Hpy188III TCNNGA 5 cut(s) 146, 544, 662, 926, 1101
Hpy8I GTNNAC 4 cut(s) 94, 273, 297, 856
HpyAV CCTTC 6 cut(s) 130, 327, 648, 685, 923, 1004
HpyCH4III ACNGT 4 cut(s) 163, 592, 860, 968
HpyCH4IV ACGT 1 cut(s) 36
HpyCH4V TGCA 5 cut(s) 388, 411, 517, 760, 1066
HpyF10VI GCNNNNNNNGC 2 cut(s) 59, 385
HpyF3I CTNAG 2 cut(s) 687, 717
HpySE526I ACGT 1 cut(s) 36
Hsp92I GRCGYC 2 cut(s) 90, 222
Hsp92II CATG 3 cut(s) 379, 839, 1070
HspAI GCGC 3 cut(s) 72, 222, 538
KasI GGCGCC 1 cut(s) 221
KflI GGGWCCC 1 cut(s) 989
KspI CCGCGG 1 cut(s) 88
Kzo9I GATC 6 cut(s) 6, 142, 279, 372, 673, 1019
LmnI GCTCC 5 cut(s) 208, 257, 522, 560, 889
MaeI CTAG 3 cut(s) 20, 50, 683
MaeII ACGT 1 cut(s) 36
MaeIII GTNAC 4 cut(s) 13, 170, 307, 586
MalI GATC 6 cut(s) 8, 144, 281, 374, 675, 1021
MbiI CCGCTC 2 cut(s) 525, 609
MboI GATC 6 cut(s) 6, 142, 279, 372, 673, 1019
MboII GAAGA 4 cut(s) 245, 568, 572, 1029
MflI RGATCY 1 cut(s) 1019
MhlI GDGCHC 1 cut(s) 627
MlsI TGGCCA 1 cut(s) 809
MluNI TGGCCA 1 cut(s) 809
Mly113I GGCGCC 1 cut(s) 222
MlyI GAGTC 1 cut(s) 968
MmeI TCCRAC 2 cut(s) 230, 1080
Mox20I TGGCCA 1 cut(s) 809
Mph1103I ATGCAT 1 cut(s) 1068
MroXI GAANNNNTTC 2 cut(s) 420, 915
MscI TGGCCA 1 cut(s) 809
MslI CAYNNNNRTG 2 cut(s) 584, 647
Msp20I TGGCCA 1 cut(s) 809
MspA1I CMGCKG 1 cut(s) 87
MspI CCGG 8 cut(s) 30, 156, 175, 312, 323, 356, 366, 425
MspR9I CCNGG 3 cut(s) 193, 366, 628
Mva1269I GAATGC 1 cut(s) 104
MvaI CCWGG 2 cut(s) 193, 628
MvnI CGCG 4 cut(s) 12, 72, 87, 538
MwoI GCNNNNNNNGC 2 cut(s) 59, 385
NarI GGCGCC 1 cut(s) 222
NciI CCSGG 1 cut(s) 366
NdeII GATC 6 cut(s) 6, 142, 279, 372, 673, 1019
NlaIII CATG 3 cut(s) 379, 839, 1070
NlaIV GGNNCC 9 cut(s) 127, 160, 204, 223, 747, 891, 912, 990, 991
NmeAIII GCCGAG 1 cut(s) 646
NmuCI GTSAC 3 cut(s) 13, 307, 586
NsiI ATGCAT 1 cut(s) 1068
OliI CACNNNNGTG 1 cut(s) 584
PceI AGGCCT 1 cut(s) 392
PcsI WCGNNNNNNNCGW 1 cut(s) 377
PctI GAATGC 1 cut(s) 104
PdmI GAANNNNTTC 2 cut(s) 420, 915
PfeI GAWTC 2 cut(s) 348, 416
PinAI ACCGGT 2 cut(s) 174, 311
PkrI GCNGC 3 cut(s) 86, 89, 190
PleI GAGTC 1 cut(s) 968
PluTI GGCGCC 1 cut(s) 225
PpsI GAGTC 1 cut(s) 968
Ppu21I YACGTR 1 cut(s) 37
PpuMI RGGWCCY 1 cut(s) 989
Psp5II RGGWCCY 1 cut(s) 989
Psp6I CCWGG 2 cut(s) 191, 626
PspFI CCCAGC 1 cut(s) 102
PspGI CCWGG 2 cut(s) 191, 626
PspN4I GGNNCC 9 cut(s) 127, 160, 204, 223, 747, 891, 912, 990, 991
PspPI GGNCC 5 cut(s) 177, 195, 314, 630, 989
PspPPI RGGWCCY 1 cut(s) 989
PsuI RGATCY 1 cut(s) 1019
RsaI GTAC 2 cut(s) 653, 834
RsaNI GTAC 2 cut(s) 652, 833
RseI CAYNNNNRTG 2 cut(s) 584, 647
SacII CCGCGG 1 cut(s) 88
SatI GCNGC 3 cut(s) 85, 88, 189
Sau3AI GATC 6 cut(s) 6, 142, 279, 372, 673, 1019
Sau96I GGNCC 5 cut(s) 177, 195, 314, 630, 989
SchI GAGTC 1 cut(s) 968
ScrFI CCNGG 3 cut(s) 193, 366, 628
SduI GDGCHC 1 cut(s) 627
SfoI GGCGCC 1 cut(s) 223
Sfr303I CCGCGG 1 cut(s) 88
SgrBI CCGCGG 1 cut(s) 88
SinI GGWCC 5 cut(s) 177, 195, 314, 630, 989
SmiMI CAYNNNNRTG 2 cut(s) 584, 647
SmlI CTYRAG 1 cut(s) 544
SmoI CTYRAG 1 cut(s) 544
SnaBI TACGTA 1 cut(s) 37
SseBI AGGCCT 1 cut(s) 392
SsiI CCGC 8 cut(s) 10, 60, 85, 87, 189, 525, 607, 958
SspDI GGCGCC 1 cut(s) 221
SspMI CTAG 3 cut(s) 20, 50, 683
StuI AGGCCT 1 cut(s) 392
StyD4I CCNGG 3 cut(s) 191, 364, 626
StyI CCWWGG 4 cut(s) 19, 198, 615, 810
TaaI ACNGT 4 cut(s) 163, 592, 860, 968
TaiI ACGT 1 cut(s) 39
TaqI TCGA 4 cut(s) 147, 371, 663, 972
TauI GCSGC 3 cut(s) 87, 90, 191
TfiI GAWTC 2 cut(s) 348, 416
TscAI CASTG 1 cut(s) 586
TseFI GTSAC 3 cut(s) 13, 307, 586
Tsp45I GTSAC 3 cut(s) 13, 307, 586
TspDTI ATGAA 5 cut(s) 687, 781, 888, 918, 1083
TspGWI ACGGA 3 cut(s) 274, 295, 1012
TspRI CASTG 1 cut(s) 586
VpaK11BI GGWCC 5 cut(s) 177, 195, 314, 630, 989
XapI RAATTY 3 cut(s) 182, 236, 864
XmaJI CCTAGG 1 cut(s) 19
XmnI GAANNNNTTC 2 cut(s) 420, 915
XspI CTAG 3 cut(s) 20, 50, 683
Zsp2I ATGCAT 1 cut(s) 1068
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.