AT3G17930

Protein of unknown function (DUF3007)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0007172
Physical Location & Seq
Reverse (-)
6142125 .. 6143310
1186 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G17930.1

Sequence Viewer

Length: 573 bp
ATGGCTTCTTTACCGTTCGGAGTTTCGAATCTATGCAGAAATCAGGAGGTTCTGTCTGCGTCTGTAAGGCTTCTTCCGGTTGGGCGACAAACCACAGGATTCGGAGCTGCGAAGAAAGTCTTATATAGATTCGAGGGACATAGATTGTCATCATCAGTAGAAAAGGGAGAGAAACAGAGAATGAGATGTAGAGTTAGCTCAAACTCTACTGAAACTGAAGACGATTCTGCTACAAAAACCAAGACGACGCCGTTTGGTTACACGAGGAAGGATGTTATATTGATAGGAGTGGGAGTGACTGCACTTGGTATCGGGCTAGAGAGTGGACTTGAGTATGTGGGAGTTGATCCGTTGCAAGCGGGGAATGCAGTACAGCTGATACTGGTGCTTGGTTTGACTTTGGGTTGGATTTCGACTTATATCTTTAGAGTCGGTAACAAGGAGATGACTTATGCCCAGCAACTTCGTGACTACGAGTCTCAAGTCATGCAGAAACGATTGGAGAGCTTATCGGAGGCAGAGTTAGAGGCATTGATGGCACAGGTTGATGAAGAGAAGACCAAGGTTGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3007

Protein Analysis

190

Amino Acids

20.91

Weight (kDa)

6.64

Isoelectric Point (pI)

32.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3007 PF11460 88 - 183 3.2e-34 Protein of unknown function (DUF3007)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 359
AclWI GGATC 1 cut(s) 341
AcuI CTGAAG 1 cut(s) 237
AcyI GRCGYC 1 cut(s) 248
AfaI GTAC 1 cut(s) 372
AhdI GACNNNNNGTC 1 cut(s) 475
AluBI AGCT 4 cut(s) 107, 198, 376, 507
AluI AGCT 4 cut(s) 107, 198, 376, 507
Alw26I GTCTC 1 cut(s) 483
AlwI GGATC 1 cut(s) 341
ApeKI GCWGC 1 cut(s) 107
AsuII TTCGAA 1 cut(s) 26
BarI GAAGNNNNNNTAC 2 cut(s) 57, 89
BauI CACGAG 1 cut(s) 262
BbsI GAAGAC 2 cut(s) 225, 563
BbvI GCAGC 1 cut(s) 94
BccI CCATC 1 cut(s) 529
BceAI ACGGC 1 cut(s) 235
BcoDI GTCTC 1 cut(s) 483
BfaI CTAG 1 cut(s) 317
BisI GCNGC 1 cut(s) 108
BlsI GCNGC 1 cut(s) 109
BmeRI GACNNNNNGTC 1 cut(s) 475
BpiI GAAGAC 2 cut(s) 225, 563
Bpu14I TTCGAA 1 cut(s) 26
BpuEI CTTGAG 2 cut(s) 350, 465
BsaBI GATNNNNATC 1 cut(s) 148
BsaHI GRCGYC 1 cut(s) 248
BsaJI CCNNGG 1 cut(s) 561
BsaWI WCCGGW 1 cut(s) 76
BsaXI ACNNNNNCTCC 6 cut(s) 38, 68, 279, 309, 506, 536
Bse1I ACTGG 1 cut(s) 387
Bse8I GATNNNNATC 1 cut(s) 148
BseDI CCNNGG 1 cut(s) 561
BseGI GGATG 1 cut(s) 277
BseJI GATNNNNATC 1 cut(s) 148
BseNI ACTGG 1 cut(s) 387
BseXI GCAGC 1 cut(s) 94
BseYI CCCAGC 1 cut(s) 456
BsgI GTGCAG 1 cut(s) 285
BsiSI CCGG 1 cut(s) 77
BslFI GGGAC 1 cut(s) 150
BsmAI GTCTC 1 cut(s) 483
BsmFI GGGAC 1 cut(s) 150
BsmI GAATGC 1 cut(s) 370
Bsp119I TTCGAA 1 cut(s) 26
Bsp143I GATC 1 cut(s) 346
BspACI CCGC 1 cut(s) 359
BspPI GGATC 1 cut(s) 341
BspT104I TTCGAA 1 cut(s) 26
BsrI ACTGG 1 cut(s) 387
BssECI CCNNGG 1 cut(s) 561
BssMI GATC 1 cut(s) 346
BssNI GRCGYC 1 cut(s) 248
BssSI CACGAG 1 cut(s) 262
BssT1I CCWWGG 1 cut(s) 561
Bst2BI CACGAG 1 cut(s) 262
Bst4CI ACNGT 1 cut(s) 15
Bst6I CTCTTC 1 cut(s) 546
BstACI GRCGYC 1 cut(s) 248
BstBI TTCGAA 1 cut(s) 26
BstC8I GCNNGC 1 cut(s) 357
BstF5I GGATG 1 cut(s) 277
BstKTI GATC 1 cut(s) 349
BstMAI GTCTC 1 cut(s) 483
BstMBI GATC 1 cut(s) 346
BstMWI GCNNNNNNNGC 2 cut(s) 365, 536
BstV1I GCAGC 1 cut(s) 94
BstV2I GAAGAC 2 cut(s) 225, 563
BtsCI GGATG 1 cut(s) 277
Cac8I GCNNGC 1 cut(s) 357
CseI GACGC 2 cut(s) 48, 256
Csp6I GTAC 1 cut(s) 371
CviAII CATG 1 cut(s) 487
CviJI RGCY 7 cut(s) 5, 70, 107, 198, 316, 376, 507
CviKI_1 RGCY 7 cut(s) 5, 70, 107, 198, 316, 376, 507
CviQI GTAC 1 cut(s) 371
DpnI GATC 1 cut(s) 348
DpnII GATC 1 cut(s) 346
DriI GACNNNNNGTC 1 cut(s) 475
Eam1104I CTCTTC 1 cut(s) 546
Eam1105I GACNNNNNGTC 1 cut(s) 475
EarI CTCTTC 1 cut(s) 546
Eco130I CCWWGG 1 cut(s) 561
Eco57I CTGAAG 1 cut(s) 237
EcoT14I CCWWGG 1 cut(s) 561
ErhI CCWWGG 1 cut(s) 561
FaeI CATG 1 cut(s) 490
FaiI YATR 9 cut(s) 34, 124, 126, 141, 278, 336, 420, 453, 488
FalI AAGNNNNNCTT 2 cut(s) 104, 136
FaqI GGGAC 1 cut(s) 150
FatI CATG 1 cut(s) 486
FauI CCCGC 1 cut(s) 352
Fnu4HI GCNGC 1 cut(s) 108
FokI GGATG 1 cut(s) 284
Fsp4HI GCNGC 1 cut(s) 108
FspBI CTAG 1 cut(s) 317
GluI GCNGC 1 cut(s) 108
GsaI CCCAGC 1 cut(s) 460
HapII CCGG 1 cut(s) 77
HgaI GACGC 2 cut(s) 48, 256
Hin1I GRCGYC 1 cut(s) 248
Hin1II CATG 1 cut(s) 490
HinfI GANTC 6 cut(s) 28, 99, 129, 224, 429, 476
HpaII CCGG 1 cut(s) 77
Hpy166II GTNNAC 1 cut(s) 326
Hpy188I TCNGA 3 cut(s) 20, 104, 514
Hpy188III TCNNGA 2 cut(s) 44, 467
Hpy8I GTNNAC 1 cut(s) 326
Hpy99I CGWCG 1 cut(s) 250
HpyAV CCTTC 1 cut(s) 262
HpyCH4III ACNGT 1 cut(s) 15
HpyCH4V TGCA 5 cut(s) 36, 302, 355, 368, 490
HpyF10VI GCNNNNNNNGC 2 cut(s) 365, 536
Hsp92I GRCGYC 1 cut(s) 248
Hsp92II CATG 1 cut(s) 490
Kzo9I GATC 1 cut(s) 346
LmnI GCTCC 1 cut(s) 104
LpnPI CCDG 6 cut(s) 29, 81, 90, 368, 470, 527
Lsp1109I GCAGC 1 cut(s) 94
MaeI CTAG 1 cut(s) 317
MaeIII GTNAC 4 cut(s) 257, 295, 434, 467
MalI GATC 1 cut(s) 348
MboI GATC 1 cut(s) 346
MboII GAAGA 5 cut(s) 65, 124, 230, 563, 568
MlyI GAGTC 2 cut(s) 438, 485
MmeI TCCRAC 1 cut(s) 386
MnlI CCTC 5 cut(s) 40, 127, 258, 508, 520
MspA1I CMGCKG 1 cut(s) 376
MspI CCGG 1 cut(s) 77
Mva1269I GAATGC 1 cut(s) 370
MwoI GCNNNNNNNGC 2 cut(s) 365, 536
NdeII GATC 1 cut(s) 346
NlaIII CATG 1 cut(s) 490
NmuCI GTSAC 2 cut(s) 295, 467
NspV TTCGAA 1 cut(s) 26
PctI GAATGC 1 cut(s) 370
PfeI GAWTC 4 cut(s) 28, 99, 129, 224
PkrI GCNGC 1 cut(s) 109
PleI GAGTC 2 cut(s) 437, 484
PpsI GAGTC 2 cut(s) 437, 484
PspFI CCCAGC 1 cut(s) 456
PvuII CAGCTG 1 cut(s) 376
RsaI GTAC 1 cut(s) 372
RsaNI GTAC 1 cut(s) 371
SatI GCNGC 1 cut(s) 108
Sau3AI GATC 1 cut(s) 346
SchI GAGTC 2 cut(s) 438, 485
SetI ASST 7 cut(s) 51, 109, 200, 378, 509, 546, 567
SfuI TTCGAA 1 cut(s) 26
SmlI CTYRAG 2 cut(s) 329, 480
SmoI CTYRAG 2 cut(s) 329, 480
SsiI CCGC 1 cut(s) 359
SspMI CTAG 1 cut(s) 317
StyI CCWWGG 1 cut(s) 561
TaaI ACNGT 1 cut(s) 15
TaqI TCGA 3 cut(s) 26, 132, 413
TatI WGTACW 1 cut(s) 370
TfiI GAWTC 4 cut(s) 28, 99, 129, 224
TseFI GTSAC 2 cut(s) 295, 467
TseI GCWGC 1 cut(s) 107
Tsp45I GTSAC 2 cut(s) 295, 467
TspDTI ATGAA 1 cut(s) 564
TspGWI ACGGA 1 cut(s) 339
XspI CTAG 1 cut(s) 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.