RLG00000005463

Protein of unknown function (DUF3007)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0007172
Physical Location & Seq
Forward (+)
67859926 .. 67864920
4995 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005463

Sequence Viewer

Length: 774 bp
ATGTATGGTAGATGGGGTATTGGTCTGGAGTCTCTTGGAATATATAGAAACGAAACCTGTGCATGCATGTATGATGTCATCTGCAATCCATTAACGGTTGCTCACCTCTCTCACTTCTACCAGATGGCAGGGATGGCATCTCTTCCACGAAATACTGCAAATTGTAGCTTACTATGTGAAAGGGGACCTGTTTCGTTTATGGGTATCTCAGCTCTTCCATTGACACAACTGAGGGTCAGCGCTTTTGATGGTTTGATGAGAGGTAGAGCTATAACTCACAGCTTATGTAGAAAGGAGACATCCCCTTTCTGGGGTAAAGGTTCCGACAGAATCCACAACATGATGTCAAAAAAGGTGGTCATTAACATCCCCAGAAATAGCAATTCTTCGAATTCTAATGGGAAAGAAGACAACTCCCCTGATAAGGCCAAGCAAAAGTCTTTTGGATACTCAAGGAAGGATGTTATATTGATCGGAGTTGGAGTAACTGTTCTAGGTGTTGGCTTGAAAAGTGGATTAGAGTTTGTTGGAGTCGATCCTTTACAAGCAGGGAATGTCGTTCAACTGGTATTGGTGTTGGGCCTTACAATCGGATGGATTTCTACTTATATTTTTCGAGTTTCAAATAAGGAGATGACATATGCACAGCAATTGCGTGACTATGAAAGTGCAGTCATGGAGAAGAGGTTAGAAGGCCTAACTGAAGCAGAACTAGAAGCGTTGCTTGAACAAGTTGATGAAGAGAAGAGGCGCCTTGGCGAGAAAGTAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3007

Protein Analysis

258

Amino Acids

28.43

Weight (kDa)

8.69

Isoelectric Point (pI)

38.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3007 PF11460 151 - 246 3.8e-34 Protein of unknown function (DUF3007)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 750
AclWI GGATC 1 cut(s) 530
AcsI RAATTY 1 cut(s) 391
AcuI CTGAAG 1 cut(s) 723
AcyI GRCGYC 1 cut(s) 751
AfeI AGCGCT 1 cut(s) 241
AfiI CCNNNNNNNGG 4 cut(s) 309, 310, 311, 424
AgsI TTSAA 4 cut(s) 508, 563, 624, 728
AloI GAACNNNNNNTCC 2 cut(s) 474, 506
AluBI AGCT 4 cut(s) 168, 212, 269, 282
AluI AGCT 4 cut(s) 168, 212, 269, 282
Alw26I GTCTC 2 cut(s) 36, 290
AlwI GGATC 1 cut(s) 530
Aor51HI AGCGCT 1 cut(s) 241
AoxI GGCC 3 cut(s) 426, 580, 694
ApoI RAATTY 1 cut(s) 391
AspLEI GCGC 2 cut(s) 242, 753
AspS9I GGNCC 2 cut(s) 185, 580
AsuHPI GGTGA 1 cut(s) 95
AsuII TTCGAA 1 cut(s) 389
AvaII GGWCC 1 cut(s) 185
BanI GGYRCC 1 cut(s) 750
BbsI GAAGAC 1 cut(s) 414
BccI CCATC 5 cut(s) 6, 118, 127, 242, 588
BcgI CGANNNNNNTGC 2 cut(s) 41, 75
BciVI GTATCC 1 cut(s) 440
BcoDI GTCTC 2 cut(s) 36, 290
BfaI CTAG 2 cut(s) 494, 713
BfoI RGCGCY 2 cut(s) 243, 754
BfuI GTATCC 1 cut(s) 440
Bme18I GGWCC 1 cut(s) 185
BmgT120I GGNCC 2 cut(s) 185, 580
BmiI GGNNCC 3 cut(s) 186, 322, 752
BmsI GCATC 1 cut(s) 146
BpiI GAAGAC 1 cut(s) 414
BpmI CTGGAG 1 cut(s) 47
Bpu14I TTCGAA 1 cut(s) 389
BpuEI CTTGAG 1 cut(s) 436
BsaHI GRCGYC 1 cut(s) 751
BsaJI CCNNGG 1 cut(s) 754
BsaXI ACNNNNNCTCC 6 cut(s) 468, 474, 498, 504, 671, 701
Bsc4I CCNNNNNNNGG 4 cut(s) 309, 310, 311, 424
Bse1I ACTGG 1 cut(s) 570
BseDI CCNNGG 1 cut(s) 754
BseGI GGATG 5 cut(s) 138, 299, 366, 466, 599
BseLI CCNNNNNNNGG 4 cut(s) 309, 310, 311, 424
BseMII CTCAG 2 cut(s) 221, 222
BseNI ACTGG 1 cut(s) 570
BsgI GTGCAG 1 cut(s) 690
BshFI GGCC 3 cut(s) 428, 582, 696
BshNI GGYRCC 1 cut(s) 750
BslFI GGGAC 1 cut(s) 198
BslI CCNNNNNNNGG 4 cut(s) 309, 310, 311, 424
BsmAI GTCTC 2 cut(s) 36, 290
BsmFI GGGAC 1 cut(s) 198
BsnI GGCC 3 cut(s) 428, 582, 696
Bsp119I TTCGAA 1 cut(s) 389
Bsp143I GATC 2 cut(s) 471, 535
BspANI GGCC 3 cut(s) 428, 582, 696
BspCNI CTCAG 2 cut(s) 221, 222
BspLI GGNNCC 3 cut(s) 186, 322, 752
BspPI GGATC 1 cut(s) 530
BspQI GCTCTTC 1 cut(s) 219
BspT104I TTCGAA 1 cut(s) 389
BspT107I GGYRCC 1 cut(s) 750
BsrI ACTGG 1 cut(s) 570
BssECI CCNNGG 1 cut(s) 754
BssMI GATC 2 cut(s) 471, 535
BssNI GRCGYC 1 cut(s) 751
BssT1I CCWWGG 1 cut(s) 754
Bst4CI ACNGT 2 cut(s) 97, 490
Bst6I CTCTTC 5 cut(s) 147, 219, 677, 735, 740
BstACI GRCGYC 1 cut(s) 751
BstBI TTCGAA 1 cut(s) 389
BstC8I GCNNGC 1 cut(s) 64
BstDEI CTNAG 2 cut(s) 208, 230
BstF5I GGATG 5 cut(s) 138, 299, 366, 466, 599
BstH2I RGCGCY 2 cut(s) 243, 754
BstHHI GCGC 2 cut(s) 242, 753
BstKTI GATC 2 cut(s) 474, 538
BstMAI GTCTC 2 cut(s) 36, 290
BstMBI GATC 2 cut(s) 471, 535
BstMWI GCNNNNNNNGC 1 cut(s) 134
BstNSI RCATGY 2 cut(s) 66, 70
BstV2I GAAGAC 1 cut(s) 414
BsuI GTATCC 1 cut(s) 440
BsuRI GGCC 3 cut(s) 428, 582, 696
BtsCI GGATG 5 cut(s) 138, 299, 366, 466, 599
Cac8I GCNNGC 1 cut(s) 64
CfoI GCGC 2 cut(s) 242, 753
Cfr13I GGNCC 2 cut(s) 185, 580
CspCI CAANNNNNGTGG 2 cut(s) 336, 371
CviAII CATG 4 cut(s) 63, 67, 340, 676
CviJI RGCY 8 cut(s) 168, 212, 269, 282, 428, 504, 582, 696
CviKI_1 RGCY 8 cut(s) 168, 212, 269, 282, 428, 504, 582, 696
DdeI CTNAG 2 cut(s) 208, 230
DinI GGCGCC 1 cut(s) 752
DpnI GATC 2 cut(s) 473, 537
DpnII GATC 2 cut(s) 471, 535
Eam1104I CTCTTC 5 cut(s) 147, 219, 677, 735, 740
EarI CTCTTC 5 cut(s) 147, 219, 677, 735, 740
Eco130I CCWWGG 1 cut(s) 754
Eco147I AGGCCT 1 cut(s) 696
Eco47I GGWCC 1 cut(s) 185
Eco47III AGCGCT 1 cut(s) 241
Eco57I CTGAAG 1 cut(s) 723
EcoO109I RGGNCCY 1 cut(s) 185
EcoRI GAATTC 1 cut(s) 391
EcoT14I CCWWGG 1 cut(s) 754
EcoT22I ATGCAT 1 cut(s) 68
EgeI GGCGCC 1 cut(s) 752
EheI GGCGCC 1 cut(s) 752
ErhI CCWWGG 1 cut(s) 754
FaeI CATG 4 cut(s) 66, 70, 343, 679
FalI AAGNNNNNCTT 2 cut(s) 708, 740
FaqI GGGAC 1 cut(s) 198
FatI CATG 4 cut(s) 62, 66, 339, 675
FauNDI CATATG 1 cut(s) 640
FokI GGATG 5 cut(s) 145, 286, 353, 473, 606
FspBI CTAG 2 cut(s) 494, 713
GlaI GCGC 2 cut(s) 241, 752
GsuI CTGGAG 1 cut(s) 47
HaeII RGCGCY 2 cut(s) 243, 754
HaeIII GGCC 3 cut(s) 428, 582, 696
HhaI GCGC 2 cut(s) 242, 753
Hin1I GRCGYC 1 cut(s) 751
Hin1II CATG 4 cut(s) 66, 70, 343, 679
Hin6I GCGC 2 cut(s) 240, 751
HinP1I GCGC 2 cut(s) 240, 751
HinfI GANTC 3 cut(s) 29, 330, 531
HphI GGTGA 1 cut(s) 95
Hpy188I TCNGA 3 cut(s) 325, 476, 593
Hpy188III TCNNGA 1 cut(s) 26
HpyAV CCTTC 2 cut(s) 451, 686
HpyCH4III ACNGT 2 cut(s) 97, 490
HpyCH4V TGCA 6 cut(s) 62, 66, 84, 158, 644, 671
HpyF10VI GCNNNNNNNGC 1 cut(s) 134
HpyF3I CTNAG 2 cut(s) 208, 230
Hsp92I GRCGYC 1 cut(s) 751
Hsp92II CATG 4 cut(s) 66, 70, 343, 679
HspAI GCGC 2 cut(s) 240, 751
KasI GGCGCC 1 cut(s) 750
Kzo9I GATC 2 cut(s) 471, 535
LguI GCTCTTC 1 cut(s) 219
LweI GCATC 1 cut(s) 146
MaeI CTAG 2 cut(s) 494, 713
MaeIII GTNAC 2 cut(s) 484, 656
MalI GATC 2 cut(s) 473, 537
MboI GATC 2 cut(s) 471, 535
MboII GAAGA 7 cut(s) 134, 206, 378, 419, 694, 752, 757
MfeI CAATTG 1 cut(s) 650
MluCI AATT 5 cut(s) 160, 382, 391, 650, 769
Mly113I GGCGCC 1 cut(s) 751
MlyI GAGTC 2 cut(s) 38, 540
MmeI TCCRAC 3 cut(s) 348, 460, 508
MnlI CCTC 5 cut(s) 116, 225, 254, 678, 741
Mph1103I ATGCAT 1 cut(s) 68
MseI TTAA 3 cut(s) 92, 363, 772
MunI CAATTG 1 cut(s) 650
MwoI GCNNNNNNNGC 1 cut(s) 134
NarI GGCGCC 1 cut(s) 751
NdeI CATATG 1 cut(s) 640
NdeII GATC 2 cut(s) 471, 535
NlaIII CATG 4 cut(s) 66, 70, 343, 679
NlaIV GGNNCC 3 cut(s) 186, 322, 752
NmuCI GTSAC 1 cut(s) 656
NsiI ATGCAT 1 cut(s) 68
NspI RCATGY 2 cut(s) 66, 70
NspV TTCGAA 1 cut(s) 389
PaeI GCATGC 1 cut(s) 66
PceI AGGCCT 1 cut(s) 696
PciSI GCTCTTC 1 cut(s) 219
PfeI GAWTC 1 cut(s) 330
PleI GAGTC 2 cut(s) 37, 539
PluTI GGCGCC 1 cut(s) 754
PpsI GAGTC 2 cut(s) 37, 539
PpuMI RGGWCCY 1 cut(s) 185
Psp5II RGGWCCY 1 cut(s) 185
PspN4I GGNNCC 3 cut(s) 186, 322, 752
PspPI GGNCC 2 cut(s) 185, 580
PspPPI RGGWCCY 1 cut(s) 185
SapI GCTCTTC 1 cut(s) 219
SaqAI TTAA 3 cut(s) 92, 363, 772
Sau3AI GATC 2 cut(s) 471, 535
Sau96I GGNCC 2 cut(s) 185, 580
SchI GAGTC 2 cut(s) 38, 540
SfaNI GCATC 1 cut(s) 146
SfoI GGCGCC 1 cut(s) 752
SfuI TTCGAA 1 cut(s) 389
SinI GGWCC 1 cut(s) 185
SmlI CTYRAG 1 cut(s) 451
SmoI CTYRAG 1 cut(s) 451
SphI GCATGC 1 cut(s) 66
Sse9I AATT 5 cut(s) 160, 382, 391, 650, 769
SseBI AGGCCT 1 cut(s) 696
SspDI GGCGCC 1 cut(s) 750
SspMI CTAG 2 cut(s) 494, 713
StuI AGGCCT 1 cut(s) 696
StyI CCWWGG 1 cut(s) 754
TaaI ACNGT 2 cut(s) 97, 490
TaqI TCGA 3 cut(s) 389, 534, 616
TasI AATT 5 cut(s) 160, 382, 391, 650, 769
TfiI GAWTC 1 cut(s) 330
Tru1I TTAA 3 cut(s) 92, 363, 772
Tru9I TTAA 3 cut(s) 92, 363, 772
TseFI GTSAC 1 cut(s) 656
Tsp45I GTSAC 1 cut(s) 656
TspDTI ATGAA 2 cut(s) 678, 753
VpaK11BI GGWCC 1 cut(s) 185
XapI RAATTY 1 cut(s) 391
XceI RCATGY 2 cut(s) 66, 70
XspI CTAG 2 cut(s) 494, 713
Zsp2I ATGCAT 1 cut(s) 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.