Rw7G001100

Protein of unknown function (DUF3007)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0007172
Physical Location & Seq
Reverse (-)
921334 .. 923581
2248 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G001100.1

Sequence Viewer

Length: 591 bp
ATGGCATCTCTTCCACATGGAAATACTGCAAATTGTAGCTTGCTATGTGAAAGGGGACCTGTTTCGTTTATGGGTATCTCAGCTCTTCCATTGACACAACTGAGGGTCAGAGCTTTTGATGGTTTGGTGAGAGGTCAATTCCACAGAATCCACAACATGATGTCAAAAAAGGTGGTCATTAACATCCCCAGAAATAGCAATTCTTCGAATTCTAATGGGGAAGAAGACAACTCCCCTGATAAAGCCAAGCAAAAGTCTTTTGGATACTCGAGGAAGGATGTTATATTGATCGGAGTTGGAGTAACTGTTCTAGGTGTTGGCTTGAAAAGTGGATTAGAGTTTGTTGGAGTCGATCCTTTACAAGCAGGGAATGTTGTTCAACTGGTGTTGGTGTTGGGCCTTACAATCGGATGGATTTCTACTTATATTTTTCGAGTTTCAAATAAGGAAATGACATATGCACAGCAATTACGTGACTATGAAAGTGCAGTCATGGAGAAGAGATTAGAAGGCCTAACTGAAGCAGAACTAGAAGCGTTGCTTGAACAAGTTGATGAAGAGAAGAGGCGCCTTGGCGAGAAAGTAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3007

Protein Analysis

196

Amino Acids

21.59

Weight (kDa)

7.77

Isoelectric Point (pI)

35.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3007 PF11460 90 - 185 2e-34 Protein of unknown function (DUF3007)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 567
AclWI GGATC 1 cut(s) 347
AcsI RAATTY 1 cut(s) 208
AcuI CTGAAG 1 cut(s) 540
AcyI GRCGYC 1 cut(s) 568
AgsI TTSAA 4 cut(s) 325, 380, 441, 545
AloI GAACNNNNNNTCC 2 cut(s) 291, 323
AluBI AGCT 3 cut(s) 39, 83, 113
AluI AGCT 3 cut(s) 39, 83, 113
AlwI GGATC 1 cut(s) 347
Ama87I CYCGRG 1 cut(s) 268
AoxI GGCC 2 cut(s) 397, 511
ApoI RAATTY 1 cut(s) 208
AspLEI GCGC 1 cut(s) 570
AspS9I GGNCC 2 cut(s) 56, 397
AsuHPI GGTGA 1 cut(s) 139
AsuII TTCGAA 1 cut(s) 206
AvaI CYCGRG 1 cut(s) 268
AvaII GGWCC 1 cut(s) 56
BanI GGYRCC 1 cut(s) 567
BbsI GAAGAC 1 cut(s) 231
BccI CCATC 2 cut(s) 113, 405
BciVI GTATCC 1 cut(s) 257
BfaI CTAG 2 cut(s) 311, 530
BfoI RGCGCY 1 cut(s) 571
BfuI GTATCC 1 cut(s) 257
Bme18I GGWCC 1 cut(s) 56
BmeT110I CYCGRG 1 cut(s) 268
BmgT120I GGNCC 2 cut(s) 56, 397
BmiI GGNNCC 2 cut(s) 57, 569
BmsI GCATC 1 cut(s) 14
BpiI GAAGAC 1 cut(s) 231
Bpu14I TTCGAA 1 cut(s) 206
BsaAI YACGTR 1 cut(s) 473
BsaHI GRCGYC 1 cut(s) 568
BsaJI CCNNGG 1 cut(s) 571
BsaXI ACNNNNNCTCC 4 cut(s) 285, 291, 315, 321
Bse1I ACTGG 1 cut(s) 387
BseDI CCNNGG 1 cut(s) 571
BseGI GGATG 3 cut(s) 183, 283, 416
BseMII CTCAG 2 cut(s) 92, 93
BseNI ACTGG 1 cut(s) 387
BsgI GTGCAG 1 cut(s) 507
BshFI GGCC 2 cut(s) 399, 513
BshNI GGYRCC 1 cut(s) 567
BsiHKCI CYCGRG 1 cut(s) 268
BslFI GGGAC 1 cut(s) 69
BsmFI GGGAC 1 cut(s) 69
BsnI GGCC 2 cut(s) 399, 513
BsoBI CYCGRG 1 cut(s) 268
Bsp119I TTCGAA 1 cut(s) 206
Bsp143I GATC 2 cut(s) 288, 352
BspANI GGCC 2 cut(s) 399, 513
BspCNI CTCAG 2 cut(s) 92, 93
BspLI GGNNCC 2 cut(s) 57, 569
BspPI GGATC 1 cut(s) 347
BspQI GCTCTTC 1 cut(s) 90
BspT104I TTCGAA 1 cut(s) 206
BspT107I GGYRCC 1 cut(s) 567
BsrI ACTGG 1 cut(s) 387
BssECI CCNNGG 1 cut(s) 571
BssMI GATC 2 cut(s) 288, 352
BssNI GRCGYC 1 cut(s) 568
BssT1I CCWWGG 1 cut(s) 571
Bst4CI ACNGT 1 cut(s) 307
Bst6I CTCTTC 5 cut(s) 15, 90, 494, 552, 557
BstACI GRCGYC 1 cut(s) 568
BstBAI YACGTR 1 cut(s) 473
BstBI TTCGAA 1 cut(s) 206
BstC8I GCNNGC 1 cut(s) 41
BstDEI CTNAG 2 cut(s) 79, 101
BstF5I GGATG 3 cut(s) 183, 283, 416
BstH2I RGCGCY 1 cut(s) 571
BstHHI GCGC 1 cut(s) 570
BstKTI GATC 2 cut(s) 291, 355
BstMBI GATC 2 cut(s) 288, 352
BstV2I GAAGAC 1 cut(s) 231
BsuI GTATCC 1 cut(s) 257
BsuRI GGCC 2 cut(s) 399, 513
BtsCI GGATG 3 cut(s) 183, 283, 416
Cac8I GCNNGC 1 cut(s) 41
CfoI GCGC 1 cut(s) 570
Cfr13I GGNCC 2 cut(s) 56, 397
CspCI CAANNNNNGTGG 2 cut(s) 153, 188
CviAII CATG 3 cut(s) 17, 157, 493
CviJI RGCY 7 cut(s) 39, 83, 113, 245, 321, 399, 513
CviKI_1 RGCY 7 cut(s) 39, 83, 113, 245, 321, 399, 513
DdeI CTNAG 2 cut(s) 79, 101
DinI GGCGCC 1 cut(s) 569
DpnI GATC 2 cut(s) 290, 354
DpnII GATC 2 cut(s) 288, 352
Eam1104I CTCTTC 5 cut(s) 15, 90, 494, 552, 557
EarI CTCTTC 5 cut(s) 15, 90, 494, 552, 557
Eco130I CCWWGG 1 cut(s) 571
Eco147I AGGCCT 1 cut(s) 513
Eco47I GGWCC 1 cut(s) 56
Eco57I CTGAAG 1 cut(s) 540
Eco88I CYCGRG 1 cut(s) 268
EcoO109I RGGNCCY 1 cut(s) 56
EcoRI GAATTC 1 cut(s) 208
EcoT14I CCWWGG 1 cut(s) 571
EgeI GGCGCC 1 cut(s) 569
EheI GGCGCC 1 cut(s) 569
ErhI CCWWGG 1 cut(s) 571
FaeI CATG 3 cut(s) 20, 160, 496
FalI AAGNNNNNCTT 2 cut(s) 525, 557
FaqI GGGAC 1 cut(s) 69
FatI CATG 3 cut(s) 16, 156, 492
FauNDI CATATG 1 cut(s) 457
FokI GGATG 3 cut(s) 170, 290, 423
FspBI CTAG 2 cut(s) 311, 530
GlaI GCGC 1 cut(s) 569
HaeII RGCGCY 1 cut(s) 571
HaeIII GGCC 2 cut(s) 399, 513
HhaI GCGC 1 cut(s) 570
Hin1I GRCGYC 1 cut(s) 568
Hin1II CATG 3 cut(s) 20, 160, 496
Hin6I GCGC 1 cut(s) 568
HinP1I GCGC 1 cut(s) 568
HinfI GANTC 2 cut(s) 147, 348
HphI GGTGA 1 cut(s) 139
Hpy188I TCNGA 3 cut(s) 110, 293, 410
HpyAV CCTTC 2 cut(s) 268, 503
HpyCH4III ACNGT 1 cut(s) 307
HpyCH4IV ACGT 1 cut(s) 472
HpyCH4V TGCA 3 cut(s) 29, 461, 488
HpyF3I CTNAG 2 cut(s) 79, 101
HpySE526I ACGT 1 cut(s) 472
Hsp92I GRCGYC 1 cut(s) 568
Hsp92II CATG 3 cut(s) 20, 160, 496
HspAI GCGC 1 cut(s) 568
KasI GGCGCC 1 cut(s) 567
Kzo9I GATC 2 cut(s) 288, 352
LguI GCTCTTC 1 cut(s) 90
LpnPI CCDG 5 cut(s) 72, 202, 249, 351, 368
LweI GCATC 1 cut(s) 14
MaeI CTAG 2 cut(s) 311, 530
MaeII ACGT 1 cut(s) 472
MaeIII GTNAC 2 cut(s) 301, 473
MalI GATC 2 cut(s) 290, 354
MboI GATC 2 cut(s) 288, 352
MboII GAAGA 7 cut(s) 77, 195, 233, 236, 511, 569, 574
MluCI AATT 6 cut(s) 31, 137, 199, 208, 467, 586
Mly113I GGCGCC 1 cut(s) 568
MlyI GAGTC 1 cut(s) 357
MmeI TCCRAC 2 cut(s) 277, 325
MnlI CCTC 4 cut(s) 96, 125, 264, 558
MseI TTAA 2 cut(s) 180, 589
NarI GGCGCC 1 cut(s) 568
NdeI CATATG 1 cut(s) 457
NdeII GATC 2 cut(s) 288, 352
NlaIII CATG 3 cut(s) 20, 160, 496
NlaIV GGNNCC 2 cut(s) 57, 569
NmuCI GTSAC 1 cut(s) 473
NspV TTCGAA 1 cut(s) 206
PaeR7I CTCGAG 1 cut(s) 268
PceI AGGCCT 1 cut(s) 513
PciSI GCTCTTC 1 cut(s) 90
PfeI GAWTC 1 cut(s) 147
PleI GAGTC 1 cut(s) 356
PluTI GGCGCC 1 cut(s) 571
PpsI GAGTC 1 cut(s) 356
Ppu21I YACGTR 1 cut(s) 473
PpuMI RGGWCCY 1 cut(s) 56
Psp5II RGGWCCY 1 cut(s) 56
PspN4I GGNNCC 2 cut(s) 57, 569
PspPI GGNCC 2 cut(s) 56, 397
PspPPI RGGWCCY 1 cut(s) 56
PspXI VCTCGAGB 1 cut(s) 268
SapI GCTCTTC 1 cut(s) 90
SaqAI TTAA 2 cut(s) 180, 589
Sau3AI GATC 2 cut(s) 288, 352
Sau96I GGNCC 2 cut(s) 56, 397
SchI GAGTC 1 cut(s) 357
SetI ASST 8 cut(s) 41, 61, 85, 115, 136, 174, 316, 475
SfaNI GCATC 1 cut(s) 14
SfoI GGCGCC 1 cut(s) 569
Sfr274I CTCGAG 1 cut(s) 268
SfuI TTCGAA 1 cut(s) 206
SinI GGWCC 1 cut(s) 56
SlaI CTCGAG 1 cut(s) 268
SmlI CTYRAG 1 cut(s) 268
SmoI CTYRAG 1 cut(s) 268
Sse9I AATT 6 cut(s) 31, 137, 199, 208, 467, 586
SseBI AGGCCT 1 cut(s) 513
SspDI GGCGCC 1 cut(s) 567
SspMI CTAG 2 cut(s) 311, 530
StuI AGGCCT 1 cut(s) 513
StyI CCWWGG 1 cut(s) 571
TaaI ACNGT 1 cut(s) 307
TaiI ACGT 1 cut(s) 475
TaqI TCGA 4 cut(s) 206, 269, 351, 433
TasI AATT 6 cut(s) 31, 137, 199, 208, 467, 586
TfiI GAWTC 1 cut(s) 147
Tru1I TTAA 2 cut(s) 180, 589
Tru9I TTAA 2 cut(s) 180, 589
TseFI GTSAC 1 cut(s) 473
Tsp45I GTSAC 1 cut(s) 473
TspDTI ATGAA 2 cut(s) 495, 570
VpaK11BI GGWCC 1 cut(s) 56
XapI RAATTY 1 cut(s) 208
XhoI CTCGAG 1 cut(s) 268
XspI CTAG 2 cut(s) 311, 530
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.