Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0007172

Physical Location & Seq

Genomic Coordinates Forward (+)

55507984 .. 55509007

Gene Structure 1024 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0414800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGCCGCCTCTGTTAACAACATCGCAGCAACATTCGCCACCGTCCCAGTTACGTCGTCTTCATCTTCCTCAAATCCTCACCAAACAAACTTCTCAATTTCAACGTCTCACAAAACCATCTCCGCCTCTTGTAACCTCCGCAAACCCAATTTCAGGGCCCAATCGTCCCCCCTTCTCAGCCTTTATGGCCCACCCGGCCCACGACCCGATCGGTCCATCTCGACCAGAACGATCACCAAGCCAACCAAACTCCCATTCTCAGCAGGCGATAAGCTCCCGAATGCATCCCTCTCGTACCTCAACCGAAACGACGTCGTTAAATCCGTCACTCTCTCCAGCCTCTGCAAGGGAAAGAGAGTCGTTTTGGTGGGCGTAACGGCGCCGTTCTCGCCGGGTTGCACTCGGTTCGTCAAACGAGTTAAATCGGCGAGGGAGAAAACTGCGGAGGTGATCGCCTGCTTTGCGGTCAGCGACGTTTTCGAGATGCGTGCCTGGGGAGAGATCCTGGCCGTTGGTGAGAGAGTGATGATGTTGTGCGACGGTCTAGGAGAGCTGACCAGGGCACTTGGCGTCTCTCTCAACGGAGCCGTTAAAGCTTGTCTCGGCTTAGGTGTACGGTCCAGGAGGTTTTGCCTGGCTTCTTTCAACGGCGTGATCACAAACGTTGACTTTGACGAAGAAGAGGAAGAAGACGCCCTGATTGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3007

Protein Analysis

235

Amino Acids

25.06

Weight (kDa)

9.42

Isoelectric Point (pI)

48.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Redoxin	PF08534	88 - 228	1.1e-16	Redoxin
AhpC-TSA	PF00578	89 - 194	1.4e-07	AhpC/TSA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007172)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17930
fragaria_vesca	FvH4_5g17480 FvH4_5g17480 FvH4_5g17480 FvH4_5g17480
malus_domestica	MD06G1228200.v1.1
prunus_persica	Prupe.5G234700_v2.0.a1 Prupe.5G234700_v2.0.a1 Prupe.5G234700_v2.0.a1
pyrus_communis	pycom06g20450 pycom14g19830
rosa_chinensis	RchiOBHm_Chr7g0178211
rosa_laevigata	RLG00000005463
rosa_multiflora	Rmu_sc0007855.1_g000005
rosa_roxburghii	Rroxscaffold_3G00275080
rosa_rugosa	Rorug06G0414600 Rorug06G0414700.1 Rorug06G0414800 Rorug06G0414900 Rorug06G0415000.1
rosa_samantha	Rh7AG013800 Rh7BG013600 Rh7CG013500 Rh7DG013800
rosa_wichuraiana	Rw7G001100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	315
AccB1I	GGYRCC	1 cut(s)	379
AciI	CCGC	5 cut(s)	6, 123, 139, 443, 464
AclI	AACGTT	1 cut(s)	663
AclWI	GGATC	1 cut(s)	496
AcoI	YGGCCR	2 cut(s)	3, 507
AcyI	GRCGYC	4 cut(s)	312, 380, 570, 693
AfaI	GTAC	2 cut(s)	296, 615
AfiI	CCNNNNNNNGG	2 cut(s)	153, 346
AgsI	TTSAA	2 cut(s)	102, 646
AjnI	CCWGG	5 cut(s)	491, 504, 557, 620, 633
AjuI	GAANNNNNNNTTGG	2 cut(s)	239, 271
AluBI	AGCT	3 cut(s)	274, 553, 596
AluI	AGCT	3 cut(s)	274, 553, 596
Alw26I	GTCTC	3 cut(s)	111, 577, 605
AlwI	GGATC	1 cut(s)	496
AlwNI	CAGNNNCTG	1 cut(s)	342
AoxI	GGCC	5 cut(s)	3, 156, 187, 196, 507
ApaI	GGGCCC	1 cut(s)	160
ApeKI	GCWGC	1 cut(s)	26
AspLEI	GCGC	1 cut(s)	382
AspS9I	GGNCC	6 cut(s)	156, 157, 188, 197, 213, 618
AsuC2I	CCSGG	2 cut(s)	195, 393
AsuHPI	GGTGA	4 cut(s)	71, 226, 460, 527
AvaII	GGWCC	2 cut(s)	213, 618
BaeGI	GKGCMC	2 cut(s)	160, 565
BanI	GGYRCC	1 cut(s)	379
BanII	GRGCYC	1 cut(s)	160
BbsI	GAAGAC	2 cut(s)	51, 696
BbvI	GCAGC	1 cut(s)	38
BccI	CCATC	2 cut(s)	125, 224
BceAI	ACGGC	5 cut(s)	367, 393, 494, 572, 664
BcgI	CGANNNNNNTGC	6 cut(s)	273, 307, 388, 422, 470, 504
BciT130I	CCWGG	5 cut(s)	493, 506, 559, 622, 635
BclI	TGATCA	1 cut(s)	654
BcnI	CCSGG	2 cut(s)	195, 393
BcoDI	GTCTC	3 cut(s)	111, 577, 605
BfaI	CTAG	1 cut(s)	545
BfoI	RGCGCY	1 cut(s)	383
BglI	GCCNNNNNGGC	2 cut(s)	186, 195
BisI	GCNGC	2 cut(s)	6, 27
BlsI	GCNGC	2 cut(s)	7, 28
Bme1390I	CCNGG	7 cut(s)	195, 393, 493, 506, 559, 622, 635
Bme18I	GGWCC	2 cut(s)	213, 618
BmgT120I	GGNCC	6 cut(s)	156, 157, 188, 197, 213, 618
BmiI	GGNNCC	3 cut(s)	158, 381, 586
BmrFI	CCNGG	7 cut(s)	195, 393, 493, 506, 559, 622, 635
BmrI	ACTGGG	1 cut(s)	41
BmsI	GCATC	2 cut(s)	293, 474
BmuI	ACTGGG	1 cut(s)	41
BpiI	GAAGAC	2 cut(s)	51, 696
BpmI	CTGGAG	1 cut(s)	319
Bpu10I	CCTNAGC	1 cut(s)	607
BpuMI	CCSGG	2 cut(s)	195, 393
BsaHI	GRCGYC	4 cut(s)	312, 380, 570, 693
BsaJI	CCNNGG	2 cut(s)	492, 558
Bsc4I	CCNNNNNNNGG	2 cut(s)	153, 346
Bse1I	ACTGG	1 cut(s)	47
BseBI	CCWGG	5 cut(s)	493, 506, 559, 622, 635
BseDI	CCNNGG	2 cut(s)	492, 558
BseGI	GGATG	1 cut(s)	284
BseLI	CCNNNNNNNGG	2 cut(s)	153, 346
BseMII	CTCAG	2 cut(s)	190, 273
BseNI	ACTGG	1 cut(s)	47
BseSI	GKGCMC	2 cut(s)	160, 565
BseXI	GCAGC	1 cut(s)	38
Bsh1285I	CGRYCG	1 cut(s)	211
BshFI	GGCC	5 cut(s)	5, 158, 189, 198, 509
BshNI	GGYRCC	1 cut(s)	379
BsiEI	CGRYCG	1 cut(s)	211
BsiSI	CCGG	2 cut(s)	195, 392
BslFI	GGGAC	2 cut(s)	29, 151
BslI	CCNNNNNNNGG	2 cut(s)	153, 346
BsmAI	GTCTC	3 cut(s)	111, 577, 605
BsmBI	CGTCTC	2 cut(s)	111, 577
BsmFI	GGGAC	2 cut(s)	29, 151
BsmI	GAATGC	1 cut(s)	286
BsnI	GGCC	5 cut(s)	5, 158, 189, 198, 509
Bsp120I	GGGCCC	1 cut(s)	156
Bsp1286I	GDGCHC	2 cut(s)	160, 565
Bsp143I	GATC	5 cut(s)	208, 231, 450, 501, 654
BspACI	CCGC	5 cut(s)	6, 123, 139, 443, 464
BspANI	GGCC	5 cut(s)	5, 158, 189, 198, 509
BspCNI	CTCAG	2 cut(s)	189, 272
BspLI	GGNNCC	3 cut(s)	158, 381, 586
BspPI	GGATC	1 cut(s)	496
BspT107I	GGYRCC	1 cut(s)	379
BsrI	ACTGG	1 cut(s)	47
BssECI	CCNNGG	2 cut(s)	492, 558
BssMI	GATC	5 cut(s)	208, 231, 450, 501, 654
BssNI	GRCGYC	4 cut(s)	312, 380, 570, 693
Bst2UI	CCWGG	5 cut(s)	493, 506, 559, 622, 635
Bst4CI	ACNGT	3 cut(s)	43, 542, 618
Bst6I	CTCTTC	1 cut(s)	675
BstACI	GRCGYC	4 cut(s)	312, 380, 570, 693
BstC8I	GCNNGC	3 cut(s)	265, 457, 489
BstDEI	CTNAG	3 cut(s)	176, 259, 607
BstENI	CCTNNNNNAGG	1 cut(s)	344
BstF5I	GGATG	1 cut(s)	284
BstH2I	RGCGCY	1 cut(s)	383
BstHHI	GCGC	1 cut(s)	382
BstKTI	GATC	5 cut(s)	211, 234, 453, 504, 657
BstMAI	GTCTC	3 cut(s)	111, 577, 605
BstMBI	GATC	5 cut(s)	208, 231, 450, 501, 654
BstMCI	CGRYCG	1 cut(s)	211
BstMWI	GCNNNNNNNGC	6 cut(s)	35, 186, 195, 388, 461, 593
BstNI	CCWGG	5 cut(s)	493, 506, 559, 622, 635
BstSCI	CCNGG	7 cut(s)	193, 391, 491, 504, 557, 620, 633
BstSLI	GKGCMC	2 cut(s)	160, 565
BstV1I	GCAGC	1 cut(s)	38
BstV2I	GAAGAC	2 cut(s)	51, 696
BstX2I	RGATCY	1 cut(s)	501
BstYI	RGATCY	1 cut(s)	501
BsuRI	GGCC	5 cut(s)	5, 158, 189, 198, 509
BtgZI	GCGATG	1 cut(s)	7
BtsCI	GGATG	1 cut(s)	284
Cac8I	GCNNGC	3 cut(s)	265, 457, 489
CaiI	CAGNNNCTG	1 cut(s)	342
CfoI	GCGC	1 cut(s)	382
Cfr13I	GGNCC	6 cut(s)	156, 157, 188, 197, 213, 618
CseI	GACGC	2 cut(s)	559, 701
Csp6I	GTAC	2 cut(s)	295, 614
CviQI	GTAC	2 cut(s)	295, 614
DdeI	CTNAG	3 cut(s)	176, 259, 607
DinI	GGCGCC	1 cut(s)	381
DpnI	GATC	5 cut(s)	210, 233, 452, 503, 656
DpnII	GATC	5 cut(s)	208, 231, 450, 501, 654
EaeI	YGGCCR	2 cut(s)	3, 507
Eam1104I	CTCTTC	1 cut(s)	675
EarI	CTCTTC	1 cut(s)	675
EciI	GGCGGA	1 cut(s)	112
Eco24I	GRGCYC	1 cut(s)	160
Eco47I	GGWCC	2 cut(s)	213, 618
EcoNI	CCTNNNNNAGG	1 cut(s)	344
EcoO109I	RGGNCCY	1 cut(s)	156
EcoRII	CCWGG	5 cut(s)	491, 504, 557, 620, 633
EcoT22I	ATGCAT	1 cut(s)	286
EcoT38I	GRGCYC	1 cut(s)	160
EgeI	GGCGCC	1 cut(s)	381
EheI	GGCGCC	1 cut(s)	381
Esp3I	CGTCTC	2 cut(s)	111, 577
FaiI	YATR	1 cut(s)	186
FaqI	GGGAC	2 cut(s)	29, 151
FbaI	TGATCA	1 cut(s)	654
Fnu4HI	GCNGC	2 cut(s)	6, 27
FokI	GGATG	1 cut(s)	271
FriOI	GRGCYC	1 cut(s)	160
Fsp4HI	GCNGC	2 cut(s)	6, 27
FspBI	CTAG	1 cut(s)	545
GlaI	GCGC	1 cut(s)	381
GluI	GCNGC	2 cut(s)	6, 27
GsuI	CTGGAG	1 cut(s)	319
HaeII	RGCGCY	1 cut(s)	383
HaeIII	GGCC	5 cut(s)	5, 158, 189, 198, 509
HapII	CCGG	2 cut(s)	195, 392
HgaI	GACGC	2 cut(s)	559, 701
HhaI	GCGC	1 cut(s)	382
Hin1I	GRCGYC	4 cut(s)	312, 380, 570, 693
Hin6I	GCGC	1 cut(s)	380
HinP1I	GCGC	1 cut(s)	380
HincII	GTYRAC	2 cut(s)	16, 667
HindII	GTYRAC	2 cut(s)	16, 667
HindIII	AAGCTT	1 cut(s)	594
HinfI	GANTC	1 cut(s)	357
HpaI	GTTAAC	1 cut(s)	16
HpaII	CCGG	2 cut(s)	195, 392
HphI	GGTGA	4 cut(s)	71, 226, 460, 527
Hpy166II	GTNNAC	3 cut(s)	16, 614, 667
Hpy188III	TCNNGA	3 cut(s)	220, 277, 481
Hpy8I	GTNNAC	3 cut(s)	16, 614, 667
Hpy99I	CGWCG	5 cut(s)	58, 314, 317, 476, 542
HpyAV	CCTTC	1 cut(s)	182
HpyCH4III	ACNGT	3 cut(s)	43, 542, 618
HpyCH4IV	ACGT	5 cut(s)	53, 104, 312, 474, 663
HpyCH4V	TGCA	3 cut(s)	284, 345, 399
HpyF10VI	GCNNNNNNNGC	6 cut(s)	35, 186, 195, 388, 461, 593
HpyF3I	CTNAG	3 cut(s)	176, 259, 607
HpySE526I	ACGT	5 cut(s)	53, 104, 312, 474, 663
Hsp92I	GRCGYC	4 cut(s)	312, 380, 570, 693
HspAI	GCGC	1 cut(s)	380
KasI	GGCGCC	1 cut(s)	379
Ksp22I	TGATCA	1 cut(s)	654
KspAI	GTTAAC	1 cut(s)	16
Kzo9I	GATC	5 cut(s)	208, 231, 450, 501, 654
LmnI	GCTCC	2 cut(s)	279, 584
Lsp1109I	GCAGC	1 cut(s)	38
LweI	GCATC	2 cut(s)	293, 474
MaeI	CTAG	1 cut(s)	545
MaeII	ACGT	5 cut(s)	53, 104, 312, 474, 663
MaeIII	GTNAC	4 cut(s)	49, 131, 325, 373
MalI	GATC	5 cut(s)	210, 233, 452, 503, 656
MboI	GATC	5 cut(s)	208, 231, 450, 501, 654
MboII	GAAGA	6 cut(s)	51, 57, 689, 692, 698, 701
MflI	RGATCY	1 cut(s)	501
MhlI	GDGCHC	2 cut(s)	160, 565
MluCI	AATT	2 cut(s)	96, 148
Mly113I	GGCGCC	1 cut(s)	380
MlyI	GAGTC	1 cut(s)	366
Mph1103I	ATGCAT	1 cut(s)	286
MseI	TTAA	4 cut(s)	15, 318, 420, 591
MspI	CCGG	2 cut(s)	195, 392
MspR9I	CCNGG	7 cut(s)	195, 393, 493, 506, 559, 622, 635
Mva1269I	GAATGC	1 cut(s)	286
MvaI	CCWGG	5 cut(s)	493, 506, 559, 622, 635
MwoI	GCNNNNNNNGC	6 cut(s)	35, 186, 195, 388, 461, 593
NarI	GGCGCC	1 cut(s)	380
NciI	CCSGG	2 cut(s)	195, 393
NdeII	GATC	5 cut(s)	208, 231, 450, 501, 654
NlaIV	GGNNCC	3 cut(s)	158, 381, 586
NmeAIII	GCCGAG	1 cut(s)	582
NmuCI	GTSAC	1 cut(s)	325
NsiI	ATGCAT	1 cut(s)	286
PcsI	WCGNNNNNNNCGW	2 cut(s)	227, 321
PctI	GAATGC	1 cut(s)	286
PfoI	TCCNGGA	1 cut(s)	620
PkrI	GCNGC	2 cut(s)	7, 28
Ple19I	CGATCG	1 cut(s)	211
PleI	GAGTC	1 cut(s)	365
PluTI	GGCGCC	1 cut(s)	383
PpsI	GAGTC	1 cut(s)	365
Psp1406I	AACGTT	1 cut(s)	663
Psp6I	CCWGG	5 cut(s)	491, 504, 557, 620, 633
PspGI	CCWGG	5 cut(s)	491, 504, 557, 620, 633
PspN4I	GGNNCC	3 cut(s)	158, 381, 586
PspOMI	GGGCCC	1 cut(s)	156
PspPI	GGNCC	6 cut(s)	156, 157, 188, 197, 213, 618
PstNI	CAGNNNCTG	1 cut(s)	342
PsuI	RGATCY	1 cut(s)	501
PvuI	CGATCG	1 cut(s)	211
RsaI	GTAC	2 cut(s)	296, 615
RsaNI	GTAC	2 cut(s)	295, 614
SaqAI	TTAA	4 cut(s)	15, 318, 420, 591
SatI	GCNGC	2 cut(s)	6, 27
Sau3AI	GATC	5 cut(s)	208, 231, 450, 501, 654
Sau96I	GGNCC	6 cut(s)	156, 157, 188, 197, 213, 618
SchI	GAGTC	1 cut(s)	366
ScrFI	CCNGG	7 cut(s)	195, 393, 493, 506, 559, 622, 635
SduI	GDGCHC	2 cut(s)	160, 565
SfaNI	GCATC	2 cut(s)	293, 474
SfiI	GGCCNNNNNGGCC	1 cut(s)	195
SfoI	GGCGCC	1 cut(s)	381
SinI	GGWCC	2 cut(s)	213, 618
Sse9I	AATT	2 cut(s)	96, 148
SsiI	CCGC	5 cut(s)	6, 123, 139, 443, 464
SspDI	GGCGCC	1 cut(s)	379
SspMI	CTAG	1 cut(s)	545
StyD4I	CCNGG	7 cut(s)	193, 391, 491, 504, 557, 620, 633
TaaI	ACNGT	3 cut(s)	43, 542, 618
TaiI	ACGT	5 cut(s)	56, 107, 315, 477, 666
TaqI	TCGA	2 cut(s)	221, 480
TaqII	GACCGA	1 cut(s)	201
TasI	AATT	2 cut(s)	96, 148
TauI	GCSGC	1 cut(s)	8
Tru1I	TTAA	4 cut(s)	15, 318, 420, 591
Tru9I	TTAA	4 cut(s)	15, 318, 420, 591
TseFI	GTSAC	1 cut(s)	325
TseI	GCWGC	1 cut(s)	26
Tsp45I	GTSAC	1 cut(s)	325
TspDTI	ATGAA	1 cut(s)	51
TspGWI	ACGGA	2 cut(s)	313, 597
VpaK11BI	GGWCC	2 cut(s)	213, 618
XagI	CCTNNNNNAGG	1 cut(s)	344
XspI	CTAG	1 cut(s)	545
ZraI	GACGTC	1 cut(s)	313
Zsp2I	ATGCAT	1 cut(s)	286

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.