Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0007172

Physical Location & Seq

Genomic Coordinates Forward (+)

23475060 .. 23477226

Gene Structure 2167 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g20450.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGCAATTGAAGGTCAGAGCTTTTCATGGTTTAGTGAGAGGAAAAGTCATGATTCACAGCTTATATAGAAATGAAACATCCCTTTTATGTGGAGAAGGATCCAATAGCATCAACCACATAATTCCAAAAAAGGCGATCTTAACCATTCCCAGATGTAGCAGTTCCTCGGACTCTAATGCAAGCGAAGATGACTCCTCTGATCAGGCCAAGAAGAAACCATTTGGATACTCAAGAAAGGATGTTTTATTGATTGGAGTAGGAGTAACTGCTATCGGGATCGGCTTGAAAAGCGGATTAGAGTTTGCTGGAGTTGATCCTTTACAAGCAGGAAACGTTGTTCAGCTGGTGCTGGTGTTGGGCCTGACTATTGGATGGATTTCCACTTATATTTTTCGTGTTTCAAATAAGGAAATGACGTACGCACAACAAATACGCGATTATGAAAGCAAAGTCATGGAGAAAAGGTTAGAAGGCCTAACAGAAGCAGAGTTAGAAGCATTGCTTGAACAAGTTGAGGAAGAGAAGAGGCGCCTCGGCGAGCAGCAGGTCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3007

Protein Analysis

185

Amino Acids

20.35

Weight (kDa)

7.75

Isoelectric Point (pI)

34.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007172)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17930
fragaria_vesca	FvH4_5g17480 FvH4_5g17480 FvH4_5g17480 FvH4_5g17480
malus_domestica	MD06G1228200.v1.1
prunus_persica	Prupe.5G234700_v2.0.a1 Prupe.5G234700_v2.0.a1 Prupe.5G234700_v2.0.a1
pyrus_communis	pycom06g20450 pycom14g19830
rosa_chinensis	RchiOBHm_Chr7g0178211
rosa_laevigata	RLG00000005463
rosa_multiflora	Rmu_sc0007855.1_g000005
rosa_roxburghii	Rroxscaffold_3G00275080
rosa_rugosa	Rorug06G0414600 Rorug06G0414700.1 Rorug06G0414800 Rorug06G0414900 Rorug06G0415000.1
rosa_samantha	Rh7AG013800 Rh7BG013600 Rh7CG013500 Rh7DG013800
rosa_wichuraiana	Rw7G001100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	535
AccB1I	GGYRCC	1 cut(s)	528
AccII	CGCG	1 cut(s)	435
AciI	CCGC	1 cut(s)	291
AclI	AACGTT	1 cut(s)	333
AclWI	GGATC	4 cut(s)	93, 106, 284, 308
AcyI	GRCGYC	1 cut(s)	529
AfaI	GTAC	1 cut(s)	419
AgsI	TTSAA	4 cut(s)	10, 286, 402, 506
AloI	GAACNNNNNNTCC	2 cut(s)	321, 353
AluBI	AGCT	3 cut(s)	20, 60, 343
AluI	AGCT	3 cut(s)	20, 60, 343
AlwI	GGATC	4 cut(s)	93, 106, 284, 308
AoxI	GGCC	3 cut(s)	204, 358, 472
ApeKI	GCWGC	1 cut(s)	541
AspLEI	GCGC	1 cut(s)	531
AspS9I	GGNCC	1 cut(s)	358
BamHI	GGATCC	1 cut(s)	98
BanI	GGYRCC	1 cut(s)	528
BccI	CCATC	1 cut(s)	366
BciVI	GTATCC	1 cut(s)	218
BclI	TGATCA	1 cut(s)	199
BfoI	RGCGCY	1 cut(s)	532
BfuAI	ACCTGC	1 cut(s)	535
BfuI	GTATCC	1 cut(s)	218
BisI	GCNGC	1 cut(s)	542
BlsI	GCNGC	1 cut(s)	543
BmgT120I	GGNCC	1 cut(s)	358
BmiI	GGNNCC	2 cut(s)	100, 530
BmsI	GCATC	1 cut(s)	117
BpmI	CTGGAG	1 cut(s)	327
BpuEI	CTTGAG	1 cut(s)	214
BsaHI	GRCGYC	1 cut(s)	529
BsaJI	CCNNGG	2 cut(s)	165, 532
BsaXI	ACNNNNNCTCC	4 cut(s)	246, 276, 449, 479
Bse3DI	GCAATG	1 cut(s)	497
BseDI	CCNNGG	2 cut(s)	165, 532
BseGI	GGATG	3 cut(s)	77, 244, 377
BseMI	GCAATG	1 cut(s)	497
BseRI	GAGGAG	1 cut(s)	184
Bsh1236I	CGCG	1 cut(s)	435
BshFI	GGCC	3 cut(s)	206, 360, 474
BshNI	GGYRCC	1 cut(s)	528
BsiWI	CGTACG	1 cut(s)	417
BsnI	GGCC	3 cut(s)	206, 360, 474
Bsp143I	GATC	5 cut(s)	98, 135, 199, 276, 313
BspACI	CCGC	1 cut(s)	291
BspANI	GGCC	3 cut(s)	206, 360, 474
BspFNI	CGCG	1 cut(s)	435
BspHI	TCATGA	1 cut(s)	48
BspLI	GGNNCC	2 cut(s)	100, 530
BspMI	ACCTGC	1 cut(s)	535
BspPI	GGATC	4 cut(s)	93, 106, 284, 308
BspT107I	GGYRCC	1 cut(s)	528
BsrDI	GCAATG	1 cut(s)	497
BssECI	CCNNGG	2 cut(s)	165, 532
BssMI	GATC	5 cut(s)	98, 135, 199, 276, 313
BssNI	GRCGYC	1 cut(s)	529
Bst6I	CTCTTC	2 cut(s)	513, 518
BstACI	GRCGYC	1 cut(s)	529
BstC8I	GCNNGC	2 cut(s)	181, 539
BstF5I	GGATG	3 cut(s)	77, 244, 377
BstFNI	CGCG	1 cut(s)	435
BstH2I	RGCGCY	1 cut(s)	532
BstHHI	GCGC	1 cut(s)	531
BstKTI	GATC	5 cut(s)	101, 138, 202, 279, 316
BstMBI	GATC	5 cut(s)	98, 135, 199, 276, 313
BstMWI	GCNNNNNNNGC	1 cut(s)	288
BstUI	CGCG	1 cut(s)	435
BstX2I	RGATCY	1 cut(s)	98
BstYI	RGATCY	1 cut(s)	98
BsuI	GTATCC	1 cut(s)	218
BsuRI	GGCC	3 cut(s)	206, 360, 474
BtsCI	GGATG	3 cut(s)	77, 244, 377
BveI	ACCTGC	1 cut(s)	535
Cac8I	GCNNGC	2 cut(s)	181, 539
CciI	TCATGA	1 cut(s)	48
CfoI	GCGC	1 cut(s)	531
Cfr13I	GGNCC	1 cut(s)	358
Csp6I	GTAC	1 cut(s)	418
CviAII	CATG	3 cut(s)	26, 49, 454
CviJI	RGCY	7 cut(s)	20, 60, 206, 282, 343, 360, 474
CviKI_1	RGCY	7 cut(s)	20, 60, 206, 282, 343, 360, 474
CviQI	GTAC	1 cut(s)	418
DinI	GGCGCC	1 cut(s)	530
DpnI	GATC	5 cut(s)	100, 137, 201, 278, 315
DpnII	GATC	5 cut(s)	98, 135, 199, 276, 313
Eam1104I	CTCTTC	2 cut(s)	513, 518
EarI	CTCTTC	2 cut(s)	513, 518
Eco147I	AGGCCT	1 cut(s)	474
EgeI	GGCGCC	1 cut(s)	530
EheI	GGCGCC	1 cut(s)	530
FaeI	CATG	3 cut(s)	29, 52, 457
FaiI	YATR	9 cut(s)	27, 50, 64, 66, 88, 119, 387, 441, 455
FalI	AAGNNNNNCTT	4 cut(s)	122, 154, 486, 518
FatI	CATG	3 cut(s)	25, 48, 453
FbaI	TGATCA	1 cut(s)	199
Fnu4HI	GCNGC	1 cut(s)	542
FokI	GGATG	3 cut(s)	64, 251, 384
Fsp4HI	GCNGC	1 cut(s)	542
GlaI	GCGC	1 cut(s)	530
GluI	GCNGC	1 cut(s)	542
GsuI	CTGGAG	1 cut(s)	327
HaeII	RGCGCY	1 cut(s)	532
HaeIII	GGCC	3 cut(s)	206, 360, 474
HhaI	GCGC	1 cut(s)	531
Hin1I	GRCGYC	1 cut(s)	529
Hin1II	CATG	3 cut(s)	29, 52, 457
Hin6I	GCGC	1 cut(s)	529
HinP1I	GCGC	1 cut(s)	529
HinfI	GANTC	3 cut(s)	52, 170, 191
Hpy188I	TCNGA	3 cut(s)	17, 169, 199
Hpy188III	TCNNGA	3 cut(s)	49, 231, 274
HpyAV	CCTTC	3 cut(s)	4, 89, 464
HpyCH4IV	ACGT	2 cut(s)	333, 416
HpyCH4V	TGCA	2 cut(s)	4, 179
HpyF10VI	GCNNNNNNNGC	1 cut(s)	288
HpySE526I	ACGT	2 cut(s)	333, 416
Hsp92I	GRCGYC	1 cut(s)	529
Hsp92II	CATG	3 cut(s)	29, 52, 457
HspAI	GCGC	1 cut(s)	529
KasI	GGCGCC	1 cut(s)	528
Ksp22I	TGATCA	1 cut(s)	199
Kzo9I	GATC	5 cut(s)	98, 135, 199, 276, 313
LpnPI	CCDG	8 cut(s)	163, 188, 291, 312, 329, 335, 374, 530
LweI	GCATC	1 cut(s)	117
MaeII	ACGT	2 cut(s)	333, 416
MaeIII	GTNAC	1 cut(s)	262
MalI	GATC	5 cut(s)	100, 137, 201, 278, 315
MboI	GATC	5 cut(s)	98, 135, 199, 276, 313
MboII	GAAGA	4 cut(s)	197, 223, 530, 535
MfeI	CAATTG	1 cut(s)	5
MflI	RGATCY	1 cut(s)	98
MluCI	AATT	2 cut(s)	5, 120
Mly113I	GGCGCC	1 cut(s)	529
MlyI	GAGTC	2 cut(s)	164, 185
MnlI	CCTC	6 cut(s)	32, 175, 205, 508, 519, 542
MseI	TTAA	1 cut(s)	140
MspA1I	CMGCKG	1 cut(s)	343
MunI	CAATTG	1 cut(s)	5
MvnI	CGCG	1 cut(s)	435
MwoI	GCNNNNNNNGC	1 cut(s)	288
NarI	GGCGCC	1 cut(s)	529
NdeII	GATC	5 cut(s)	98, 135, 199, 276, 313
NlaIII	CATG	3 cut(s)	29, 52, 457
NlaIV	GGNNCC	2 cut(s)	100, 530
NmeAIII	GCCGAG	1 cut(s)	513
PagI	TCATGA	1 cut(s)	48
PceI	AGGCCT	1 cut(s)	474
PfeI	GAWTC	1 cut(s)	52
Pfl23II	CGTACG	1 cut(s)	417
PkrI	GCNGC	1 cut(s)	543
PleI	GAGTC	2 cut(s)	164, 185
PluTI	GGCGCC	1 cut(s)	532
PpsI	GAGTC	2 cut(s)	164, 185
Psp1406I	AACGTT	1 cut(s)	333
PspLI	CGTACG	1 cut(s)	417
PspN4I	GGNNCC	2 cut(s)	100, 530
PspPI	GGNCC	1 cut(s)	358
PsuI	RGATCY	1 cut(s)	98
PvuII	CAGCTG	1 cut(s)	343
RsaI	GTAC	1 cut(s)	419
RsaNI	GTAC	1 cut(s)	418
SaqAI	TTAA	1 cut(s)	140
SatI	GCNGC	1 cut(s)	542
Sau3AI	GATC	5 cut(s)	98, 135, 199, 276, 313
Sau96I	GGNCC	1 cut(s)	358
SchI	GAGTC	2 cut(s)	164, 185
SetI	ASST	8 cut(s)	15, 22, 62, 336, 345, 419, 467, 549
SfaNI	GCATC	1 cut(s)	117
SfoI	GGCGCC	1 cut(s)	530
SmlI	CTYRAG	1 cut(s)	229
SmoI	CTYRAG	1 cut(s)	229
Sse9I	AATT	2 cut(s)	5, 120
SseBI	AGGCCT	1 cut(s)	474
SsiI	CCGC	1 cut(s)	291
SspDI	GGCGCC	1 cut(s)	528
StuI	AGGCCT	1 cut(s)	474
TaiI	ACGT	2 cut(s)	336, 419
TasI	AATT	2 cut(s)	5, 120
TfiI	GAWTC	1 cut(s)	52
Tru1I	TTAA	1 cut(s)	140
Tru9I	TTAA	1 cut(s)	140
TseI	GCWGC	1 cut(s)	541
TspDTI	ATGAA	3 cut(s)	14, 87, 456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.