Rorug06G0414600

Protein of unknown function (DUF3007)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0007172
Physical Location & Seq
Reverse (-)
55500262 .. 55500690
429 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0414600.1

Sequence Viewer

Length: 429 bp
ATGGATTATGGCTTGATAAAGCGGATTCCGCCACTAGAAAATTGCTTGAAGCTTAACTTCGATGGTTTGGTCAACAGTTCCGAGATGGCTGCTGTTGGCTTTGTTACCTTTAATCATTTGGGAAATACAATCATTGCTGGGGCTAAAAAGTTTGGGACGACTACTATTACAGTTGTAGAATGTAGTGCCCTCAAATATGGTTTAATCCATGCACTGCAATGCAACTGTAACAGGTTGTTGGTGGAAGGCGATTTCAAGCTTGTTATTGATTGTATCAACAAGCTTTGCGACCCTCCTTGGAAAATCAAGATGCTGGCTAAAGACATTCAGCGTCTTGTTGATTTTTTGAGTCTATTTCTTTCACTCACATCCCACGTGAAGCTAATTTCCTTGCAGATACAATTACTGCACAGGGCCTTTCTCTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3007

Protein Analysis

142

Amino Acids

15.83

Weight (kDa)

8.79

Isoelectric Point (pI)

19.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 19 - 114 7.8e-13 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 22, 29
AcvI CACGTG 1 cut(s) 376
AgsI TTSAA 2 cut(s) 49, 256
AluBI AGCT 4 cut(s) 52, 259, 283, 382
AluI AGCT 4 cut(s) 52, 259, 283, 382
AoxI GGCC 1 cut(s) 414
ApeKI GCWGC 1 cut(s) 89
AspS9I GGNCC 1 cut(s) 414
BaeGI GKGCMC 1 cut(s) 190
BbrPI CACGTG 1 cut(s) 376
BbvI GCAGC 1 cut(s) 76
BccI CCATC 2 cut(s) 56, 79
BcgI CGANNNNNNTGC 2 cut(s) 71, 105
BfaI CTAG 1 cut(s) 35
BisI GCNGC 1 cut(s) 90
BlsI GCNGC 1 cut(s) 91
BmgT120I GGNCC 1 cut(s) 414
BmsI GCATC 1 cut(s) 300
BsaAI YACGTR 1 cut(s) 376
BsaJI CCNNGG 1 cut(s) 296
Bse3DI GCAATG 2 cut(s) 132, 224
BseDI CCNNGG 1 cut(s) 296
BseGI GGATG 1 cut(s) 368
BseMI GCAATG 2 cut(s) 132, 224
BseSI GKGCMC 1 cut(s) 190
BseXI GCAGC 1 cut(s) 76
BseYI CCCAGC 1 cut(s) 137
BsgI GTGCAG 1 cut(s) 392
BshFI GGCC 1 cut(s) 416
BslFI GGGAC 1 cut(s) 169
BsmFI GGGAC 1 cut(s) 169
BsnI GGCC 1 cut(s) 416
Bsp1286I GDGCHC 1 cut(s) 190
BspACI CCGC 2 cut(s) 22, 29
BspANI GGCC 1 cut(s) 416
BsrDI GCAATG 2 cut(s) 132, 224
BssECI CCNNGG 1 cut(s) 296
BssT1I CCWWGG 1 cut(s) 296
Bst4CI ACNGT 3 cut(s) 77, 172, 227
BstBAI YACGTR 1 cut(s) 376
BstC8I GCNNGC 1 cut(s) 315
BstF5I GGATG 1 cut(s) 368
BstMWI GCNNNNNNNGC 1 cut(s) 28
BstSLI GKGCMC 1 cut(s) 190
BstV1I GCAGC 1 cut(s) 76
BsuRI GGCC 1 cut(s) 416
BtsCI GGATG 1 cut(s) 368
BtsI GCAGTG 1 cut(s) 212
BtsIMutI CAGTG 1 cut(s) 212
Cac8I GCNNGC 1 cut(s) 315
Cfr13I GGNCC 1 cut(s) 414
CseI GACGC 1 cut(s) 320
CviAII CATG 1 cut(s) 209
EciI GGCGGA 1 cut(s) 18
Eco130I CCWWGG 1 cut(s) 296
Eco72I CACGTG 1 cut(s) 376
EcoO109I RGGNCCY 1 cut(s) 414
EcoT14I CCWWGG 1 cut(s) 296
ErhI CCWWGG 1 cut(s) 296
FaeI CATG 1 cut(s) 212
FaiI YATR 3 cut(s) 9, 198, 210
FalI AAGNNNNNCTT 2 cut(s) 41, 73
FaqI GGGAC 1 cut(s) 169
FatI CATG 1 cut(s) 208
Fnu4HI GCNGC 1 cut(s) 90
FokI GGATG 1 cut(s) 355
Fsp4HI GCNGC 1 cut(s) 90
FspBI CTAG 1 cut(s) 35
GluI GCNGC 1 cut(s) 90
GsaI CCCAGC 1 cut(s) 141
HaeIII GGCC 1 cut(s) 416
HgaI GACGC 1 cut(s) 320
Hin1II CATG 1 cut(s) 212
HincII GTYRAC 1 cut(s) 73
HindII GTYRAC 1 cut(s) 73
HindIII AAGCTT 3 cut(s) 50, 257, 281
HinfI GANTC 2 cut(s) 25, 349
Hpy166II GTNNAC 1 cut(s) 73
Hpy188I TCNGA 1 cut(s) 82
Hpy188III TCNNGA 2 cut(s) 307, 426
Hpy8I GTNNAC 1 cut(s) 73
HpyAV CCTTC 1 cut(s) 239
HpyCH4III ACNGT 3 cut(s) 77, 172, 227
HpyCH4IV ACGT 1 cut(s) 375
HpyCH4V TGCA 5 cut(s) 212, 217, 222, 394, 409
HpyF10VI GCNNNNNNNGC 1 cut(s) 28
HpySE526I ACGT 1 cut(s) 375
Hsp92II CATG 1 cut(s) 212
LpnPI CCDG 4 cut(s) 123, 217, 299, 397
Lsp1109I GCAGC 1 cut(s) 76
LweI GCATC 1 cut(s) 300
MaeI CTAG 1 cut(s) 35
MaeII ACGT 1 cut(s) 375
MaeIII GTNAC 2 cut(s) 103, 227
MhlI GDGCHC 1 cut(s) 190
MluCI AATT 3 cut(s) 40, 384, 401
MlyI GAGTC 1 cut(s) 358
MnlI CCTC 2 cut(s) 200, 303
MseI TTAA 3 cut(s) 54, 111, 203
MslI CAYNNNNRTG 1 cut(s) 217
MwoI GCNNNNNNNGC 1 cut(s) 28
NlaIII CATG 1 cut(s) 212
PfeI GAWTC 1 cut(s) 25
PkrI GCNGC 1 cut(s) 91
PleI GAGTC 1 cut(s) 357
PmaCI CACGTG 1 cut(s) 376
PmlI CACGTG 1 cut(s) 376
PpsI GAGTC 1 cut(s) 357
Ppu21I YACGTR 1 cut(s) 376
PspCI CACGTG 1 cut(s) 376
PspFI CCCAGC 1 cut(s) 137
PspPI GGNCC 1 cut(s) 414
RseI CAYNNNNRTG 1 cut(s) 217
SaqAI TTAA 3 cut(s) 54, 111, 203
SatI GCNGC 1 cut(s) 90
Sau96I GGNCC 1 cut(s) 414
SchI GAGTC 1 cut(s) 358
SduI GDGCHC 1 cut(s) 190
SetI ASST 7 cut(s) 54, 110, 236, 261, 285, 378, 384
SfaNI GCATC 1 cut(s) 300
SmiMI CAYNNNNRTG 1 cut(s) 217
Sse9I AATT 3 cut(s) 40, 384, 401
SsiI CCGC 2 cut(s) 22, 29
SspMI CTAG 1 cut(s) 35
StyI CCWWGG 1 cut(s) 296
TaaI ACNGT 3 cut(s) 77, 172, 227
TaiI ACGT 1 cut(s) 378
TaqI TCGA 1 cut(s) 60
TasI AATT 3 cut(s) 40, 384, 401
TfiI GAWTC 1 cut(s) 25
Tru1I TTAA 3 cut(s) 54, 111, 203
Tru9I TTAA 3 cut(s) 54, 111, 203
TscAI CASTG 1 cut(s) 219
TseI GCWGC 1 cut(s) 89
TspRI CASTG 1 cut(s) 219
XspI CTAG 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.