RchiOBHm_Chr7g0178211

Protein of unknown function (DUF3007)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0007172
Physical Location & Seq
Reverse (-)
934101 .. 937147
3047 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ15881

Sequence Viewer

Length: 645 bp
ATGGCATCTCTTCCACATGGAAATACTGCAAATTGTAGCTTACTATGTGAAAGGGGACCTGTTTCGTTTATGGGTATCTCAGCTCTTCCATTGACACAACTGAGGGTCAGAGCTTTTGATGGTTCGGTGAGAGGTAGAGCTATAACTCACAGCTTATGTAGAAAGGAGACATCCCCTTTCTGGGGTAAAGGTTCCGACAGAATCCACAACATGATGTCAAAAAAGGTGGTCATTAACATCCCCAGAAATAGCAATTCTTCGAATTCTAATGGGGAAGAAGACAACTCCCCTGATAAGGCCAAGCAAAAGTCTTTTGGATACTCGAGGAAGGATGTTATATTGATTGGAGTTGGAGTAACTGTTCTAGGTGTTGGCTTGAAAAGTGGATTAGAGTTTGTTGGAGTCGATCCTTTACAAGCAGGGAATGTCGTTCAACTGGTATTGGTGTTGGGTCTTACAATCGGATGGATTTCTACTTATATTTTTCGAGTTTCAAATAAGGAAATGACATATGCACAGCAATTACGTGACTATGAAAGCGCAGTCATGGAGAAGAGATTAGAAGGCCTAACTGAAGCAGAACTAGAAGCGTTGCTTGAACAAGTTGATGAGGAGAAGAGGCGCCTTGGCGAGAAAGTAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3007

Protein Analysis

214

Amino Acids

23.51

Weight (kDa)

8.76

Isoelectric Point (pI)

35.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3007 PF11460 108 - 203 2.5e-34 Protein of unknown function (DUF3007)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 621
AclWI GGATC 1 cut(s) 401
AcsI RAATTY 1 cut(s) 262
AcuI CTGAAG 1 cut(s) 594
AcyI GRCGYC 1 cut(s) 622
AfiI CCNNNNNNNGG 4 cut(s) 180, 181, 182, 295
AgsI TTSAA 4 cut(s) 379, 434, 495, 599
AloI GAACNNNNNNTCC 2 cut(s) 345, 377
AluBI AGCT 5 cut(s) 39, 83, 113, 140, 153
AluI AGCT 5 cut(s) 39, 83, 113, 140, 153
Alw26I GTCTC 1 cut(s) 161
AlwI GGATC 1 cut(s) 401
Ama87I CYCGRG 1 cut(s) 322
AoxI GGCC 2 cut(s) 297, 565
ApoI RAATTY 1 cut(s) 262
AspLEI GCGC 2 cut(s) 542, 624
AspS9I GGNCC 1 cut(s) 56
AsuHPI GGTGA 1 cut(s) 139
AsuII TTCGAA 1 cut(s) 260
AvaI CYCGRG 1 cut(s) 322
AvaII GGWCC 1 cut(s) 56
BanI GGYRCC 1 cut(s) 621
BbsI GAAGAC 1 cut(s) 285
BccI CCATC 2 cut(s) 113, 459
BciVI GTATCC 1 cut(s) 311
BcoDI GTCTC 1 cut(s) 161
BfaI CTAG 2 cut(s) 365, 584
BfoI RGCGCY 1 cut(s) 625
BfuI GTATCC 1 cut(s) 311
Bme18I GGWCC 1 cut(s) 56
BmeT110I CYCGRG 1 cut(s) 322
BmgT120I GGNCC 1 cut(s) 56
BmiI GGNNCC 3 cut(s) 57, 193, 623
BmsI GCATC 1 cut(s) 14
BpiI GAAGAC 1 cut(s) 285
Bpu14I TTCGAA 1 cut(s) 260
BsaAI YACGTR 1 cut(s) 527
BsaHI GRCGYC 1 cut(s) 622
BsaJI CCNNGG 1 cut(s) 625
BsaXI ACNNNNNCTCC 4 cut(s) 339, 345, 369, 375
Bsc4I CCNNNNNNNGG 4 cut(s) 180, 181, 182, 295
Bse1I ACTGG 1 cut(s) 441
BseDI CCNNGG 1 cut(s) 625
BseGI GGATG 4 cut(s) 170, 237, 337, 470
BseLI CCNNNNNNNGG 4 cut(s) 180, 181, 182, 295
BseMII CTCAG 2 cut(s) 92, 93
BseNI ACTGG 1 cut(s) 441
BseRI GAGGAG 1 cut(s) 626
BshFI GGCC 2 cut(s) 299, 567
BshNI GGYRCC 1 cut(s) 621
BsiHKCI CYCGRG 1 cut(s) 322
BslFI GGGAC 1 cut(s) 69
BslI CCNNNNNNNGG 4 cut(s) 180, 181, 182, 295
BsmAI GTCTC 1 cut(s) 161
BsmFI GGGAC 1 cut(s) 69
BsnI GGCC 2 cut(s) 299, 567
BsoBI CYCGRG 1 cut(s) 322
Bsp119I TTCGAA 1 cut(s) 260
Bsp143I GATC 1 cut(s) 406
BspANI GGCC 2 cut(s) 299, 567
BspCNI CTCAG 2 cut(s) 92, 93
BspLI GGNNCC 3 cut(s) 57, 193, 623
BspPI GGATC 1 cut(s) 401
BspQI GCTCTTC 1 cut(s) 90
BspT104I TTCGAA 1 cut(s) 260
BspT107I GGYRCC 1 cut(s) 621
BsrI ACTGG 1 cut(s) 441
BssECI CCNNGG 1 cut(s) 625
BssMI GATC 1 cut(s) 406
BssNI GRCGYC 1 cut(s) 622
BssT1I CCWWGG 1 cut(s) 625
Bst4CI ACNGT 1 cut(s) 361
Bst6I CTCTTC 4 cut(s) 15, 90, 548, 611
BstACI GRCGYC 1 cut(s) 622
BstBAI YACGTR 1 cut(s) 527
BstBI TTCGAA 1 cut(s) 260
BstDEI CTNAG 2 cut(s) 79, 101
BstF5I GGATG 4 cut(s) 170, 237, 337, 470
BstH2I RGCGCY 1 cut(s) 625
BstHHI GCGC 2 cut(s) 542, 624
BstKTI GATC 1 cut(s) 409
BstMAI GTCTC 1 cut(s) 161
BstMBI GATC 1 cut(s) 406
BstV2I GAAGAC 1 cut(s) 285
BsuI GTATCC 1 cut(s) 311
BsuRI GGCC 2 cut(s) 299, 567
BtsCI GGATG 4 cut(s) 170, 237, 337, 470
CfoI GCGC 2 cut(s) 542, 624
Cfr13I GGNCC 1 cut(s) 56
CspCI CAANNNNNGTGG 2 cut(s) 207, 242
CviAII CATG 3 cut(s) 17, 211, 547
CviJI RGCY 8 cut(s) 39, 83, 113, 140, 153, 299, 375, 567
CviKI_1 RGCY 8 cut(s) 39, 83, 113, 140, 153, 299, 375, 567
DdeI CTNAG 2 cut(s) 79, 101
DinI GGCGCC 1 cut(s) 623
DpnI GATC 1 cut(s) 408
DpnII GATC 1 cut(s) 406
Eam1104I CTCTTC 4 cut(s) 15, 90, 548, 611
EarI CTCTTC 4 cut(s) 15, 90, 548, 611
Eco130I CCWWGG 1 cut(s) 625
Eco147I AGGCCT 1 cut(s) 567
Eco47I GGWCC 1 cut(s) 56
Eco57I CTGAAG 1 cut(s) 594
Eco88I CYCGRG 1 cut(s) 322
EcoO109I RGGNCCY 1 cut(s) 56
EcoRI GAATTC 1 cut(s) 262
EcoT14I CCWWGG 1 cut(s) 625
EgeI GGCGCC 1 cut(s) 623
EheI GGCGCC 1 cut(s) 623
ErhI CCWWGG 1 cut(s) 625
FaeI CATG 3 cut(s) 20, 214, 550
FalI AAGNNNNNCTT 2 cut(s) 579, 611
FaqI GGGAC 1 cut(s) 69
FatI CATG 3 cut(s) 16, 210, 546
FauNDI CATATG 1 cut(s) 511
FokI GGATG 4 cut(s) 157, 224, 344, 477
FspBI CTAG 2 cut(s) 365, 584
GlaI GCGC 2 cut(s) 541, 623
HaeII RGCGCY 1 cut(s) 625
HaeIII GGCC 2 cut(s) 299, 567
HhaI GCGC 2 cut(s) 542, 624
Hin1I GRCGYC 1 cut(s) 622
Hin1II CATG 3 cut(s) 20, 214, 550
Hin6I GCGC 2 cut(s) 540, 622
HinP1I GCGC 2 cut(s) 540, 622
HinfI GANTC 2 cut(s) 201, 402
HphI GGTGA 1 cut(s) 139
Hpy188I TCNGA 3 cut(s) 110, 196, 464
HpyAV CCTTC 2 cut(s) 322, 557
HpyCH4III ACNGT 1 cut(s) 361
HpyCH4IV ACGT 1 cut(s) 526
HpyCH4V TGCA 2 cut(s) 29, 515
HpyF3I CTNAG 2 cut(s) 79, 101
HpySE526I ACGT 1 cut(s) 526
Hsp92I GRCGYC 1 cut(s) 622
Hsp92II CATG 3 cut(s) 20, 214, 550
HspAI GCGC 2 cut(s) 540, 622
KasI GGCGCC 1 cut(s) 621
Kzo9I GATC 1 cut(s) 406
LguI GCTCTTC 1 cut(s) 90
LpnPI CCDG 6 cut(s) 72, 166, 256, 303, 405, 422
LweI GCATC 1 cut(s) 14
MaeI CTAG 2 cut(s) 365, 584
MaeII ACGT 1 cut(s) 526
MaeIII GTNAC 2 cut(s) 355, 527
MalI GATC 1 cut(s) 408
MboI GATC 1 cut(s) 406
MboII GAAGA 6 cut(s) 77, 249, 287, 290, 565, 628
MluCI AATT 5 cut(s) 31, 253, 262, 521, 640
Mly113I GGCGCC 1 cut(s) 622
MlyI GAGTC 1 cut(s) 411
MmeI TCCRAC 3 cut(s) 219, 331, 379
MnlI CCTC 5 cut(s) 96, 125, 318, 604, 612
MseI TTAA 2 cut(s) 234, 643
NarI GGCGCC 1 cut(s) 622
NdeI CATATG 1 cut(s) 511
NdeII GATC 1 cut(s) 406
NlaIII CATG 3 cut(s) 20, 214, 550
NlaIV GGNNCC 3 cut(s) 57, 193, 623
NmuCI GTSAC 1 cut(s) 527
NspV TTCGAA 1 cut(s) 260
PaeR7I CTCGAG 1 cut(s) 322
PceI AGGCCT 1 cut(s) 567
PciSI GCTCTTC 1 cut(s) 90
PfeI GAWTC 1 cut(s) 201
PleI GAGTC 1 cut(s) 410
PluTI GGCGCC 1 cut(s) 625
PpsI GAGTC 1 cut(s) 410
Ppu21I YACGTR 1 cut(s) 527
PpuMI RGGWCCY 1 cut(s) 56
Psp5II RGGWCCY 1 cut(s) 56
PspN4I GGNNCC 3 cut(s) 57, 193, 623
PspPI GGNCC 1 cut(s) 56
PspPPI RGGWCCY 1 cut(s) 56
PspXI VCTCGAGB 1 cut(s) 322
SapI GCTCTTC 1 cut(s) 90
SaqAI TTAA 2 cut(s) 234, 643
Sau3AI GATC 1 cut(s) 406
Sau96I GGNCC 1 cut(s) 56
SchI GAGTC 1 cut(s) 411
SfaNI GCATC 1 cut(s) 14
SfoI GGCGCC 1 cut(s) 623
Sfr274I CTCGAG 1 cut(s) 322
SfuI TTCGAA 1 cut(s) 260
SinI GGWCC 1 cut(s) 56
SlaI CTCGAG 1 cut(s) 322
SmlI CTYRAG 1 cut(s) 322
SmoI CTYRAG 1 cut(s) 322
Sse9I AATT 5 cut(s) 31, 253, 262, 521, 640
SseBI AGGCCT 1 cut(s) 567
SspDI GGCGCC 1 cut(s) 621
SspMI CTAG 2 cut(s) 365, 584
StuI AGGCCT 1 cut(s) 567
StyI CCWWGG 1 cut(s) 625
TaaI ACNGT 1 cut(s) 361
TaiI ACGT 1 cut(s) 529
TaqI TCGA 4 cut(s) 260, 323, 405, 487
TasI AATT 5 cut(s) 31, 253, 262, 521, 640
TfiI GAWTC 1 cut(s) 201
Tru1I TTAA 2 cut(s) 234, 643
Tru9I TTAA 2 cut(s) 234, 643
TseFI GTSAC 1 cut(s) 527
Tsp45I GTSAC 1 cut(s) 527
TspDTI ATGAA 1 cut(s) 549
VpaK11BI GGWCC 1 cut(s) 56
XapI RAATTY 1 cut(s) 262
XhoI CTCGAG 1 cut(s) 322
XspI CTAG 2 cut(s) 365, 584
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.