FvH4_5g17480

Protein of unknown function (DUF3007)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0007172
Physical Location & Seq
Forward (+)
10005374 .. 10008252
2879 bp
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UTR
Exon/CDS
Intron
FvH4_5g17480.t3

Sequence Viewer

Length: 645 bp
ATGGCATCTCTTCCACTTGGAAATACTACAAATTGTAGCTTACTATGTGAAAGAAGACCCGTTTCGTTTATGGGCATCTCGGCTCTTCCATTGACACAACTGAGGATTGGAGCTTTTGCTGGTTTGGTGAGAGGAAGAGCTGCAACACACAGCTTATGTAGAAAGGAGATGTCCCTTTTCTGGGGTAAAGGTTCCGACGGAATAAACAAAATGAAGTCGAAAAAGGTGATCTTTACCATCCCCAGAAGTAGTTCTTCGAACTCTAATGGGGGTGAAGAGAACTCCCCTGATAATGCCAAGAAGCAAAAATCTTTTGGATACTCAAGGAAAGATGTTATATTGATTGGAGTTGGAGTAACTGCACTAGGCGTTGGCTTGAAAAGTGGATTAGAGTTTGTAGGAGTTGATCCATTACAAGCAGGAAATGTCGTTCAACTGGTACTGGTGTTGGGCCTTACGATTGGATGGATTTCCACTTATATTTTTCGAGTTTCTAATAAGGAAATGACATATGCACAGCAATTGCGTGACTATGAAAGCGCAGTCATGGAGAAGAGGTTAGAGGGCCTAACAGAAGCAGAACTAGAAGCGTTGCTTGAACAAGTTGACGAAGAGAAGAGGCGCCTTGGCGAGAAAGTCAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3007

Protein Analysis

215

Amino Acids

23.33

Weight (kDa)

9.28

Isoelectric Point (pI)

37.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3007 PF11460 108 - 203 4e-34 Protein of unknown function (DUF3007)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 621
AclWI GGATC 1 cut(s) 401
AcyI GRCGYC 1 cut(s) 622
AfaI GTAC 1 cut(s) 441
AfiI CCNNNNNNNGG 2 cut(s) 180, 181
AgsI TTSAA 3 cut(s) 379, 434, 599
AloI GAACNNNNNNTCC 2 cut(s) 414, 446
AluBI AGCT 4 cut(s) 39, 113, 140, 153
AluI AGCT 4 cut(s) 39, 113, 140, 153
AlwI GGATC 1 cut(s) 401
AoxI GGCC 2 cut(s) 451, 565
ApeKI GCWGC 1 cut(s) 140
Asp700I GAANNNNTTC 1 cut(s) 250
AspLEI GCGC 2 cut(s) 542, 624
AspS9I GGNCC 2 cut(s) 451, 565
AsuHPI GGTGA 3 cut(s) 139, 238, 284
AsuII TTCGAA 1 cut(s) 257
BaeI ACNNNNGTAYC 2 cut(s) 431, 464
BanI GGYRCC 1 cut(s) 621
BbsI GAAGAC 1 cut(s) 61
BbvI GCAGC 1 cut(s) 127
BccI CCATC 2 cut(s) 245, 459
BciVI GTATCC 1 cut(s) 311
BfaI CTAG 2 cut(s) 365, 584
BfoI RGCGCY 1 cut(s) 625
BfuI GTATCC 1 cut(s) 311
BisI GCNGC 1 cut(s) 141
BlsI GCNGC 1 cut(s) 142
BmgT120I GGNCC 2 cut(s) 451, 565
BmiI GGNNCC 2 cut(s) 193, 623
BmsI GCATC 2 cut(s) 14, 84
BpiI GAAGAC 1 cut(s) 61
Bpu14I TTCGAA 1 cut(s) 257
BpuEI CTTGAG 1 cut(s) 307
BsaHI GRCGYC 1 cut(s) 622
BsaJI CCNNGG 1 cut(s) 625
BsaXI ACNNNNNCTCC 4 cut(s) 339, 369, 542, 572
Bsc4I CCNNNNNNNGG 2 cut(s) 180, 181
Bse1I ACTGG 2 cut(s) 441, 447
BseDI CCNNGG 1 cut(s) 625
BseGI GGATG 2 cut(s) 237, 470
BseLI CCNNNNNNNGG 2 cut(s) 180, 181
BseMII CTCAG 1 cut(s) 92
BseNI ACTGG 2 cut(s) 441, 447
BseXI GCAGC 1 cut(s) 127
BsgI GTGCAG 1 cut(s) 345
BshFI GGCC 2 cut(s) 453, 567
BshNI GGYRCC 1 cut(s) 621
BslFI GGGAC 1 cut(s) 157
BslI CCNNNNNNNGG 2 cut(s) 180, 181
BsmFI GGGAC 1 cut(s) 157
BsnI GGCC 2 cut(s) 453, 567
Bsp119I TTCGAA 1 cut(s) 257
Bsp143I GATC 2 cut(s) 228, 406
BspANI GGCC 2 cut(s) 453, 567
BspCNI CTCAG 1 cut(s) 93
BspLI GGNNCC 2 cut(s) 193, 623
BspPI GGATC 1 cut(s) 401
BspQI GCTCTTC 2 cut(s) 90, 130
BspT104I TTCGAA 1 cut(s) 257
BspT107I GGYRCC 1 cut(s) 621
BsrI ACTGG 2 cut(s) 441, 447
BssECI CCNNGG 1 cut(s) 625
BssMI GATC 2 cut(s) 228, 406
BssNI GRCGYC 1 cut(s) 622
BssT1I CCWWGG 1 cut(s) 625
Bst6I CTCTTC 7 cut(s) 15, 90, 130, 270, 548, 606, 611
BstACI GRCGYC 1 cut(s) 622
BstBI TTCGAA 1 cut(s) 257
BstDEI CTNAG 1 cut(s) 101
BstF5I GGATG 2 cut(s) 237, 470
BstH2I RGCGCY 1 cut(s) 625
BstHHI GCGC 2 cut(s) 542, 624
BstKTI GATC 2 cut(s) 231, 409
BstMBI GATC 2 cut(s) 228, 406
BstV1I GCAGC 1 cut(s) 127
BstV2I GAAGAC 1 cut(s) 61
BsuI GTATCC 1 cut(s) 311
BsuRI GGCC 2 cut(s) 453, 567
BtsCI GGATG 2 cut(s) 237, 470
CfoI GCGC 2 cut(s) 542, 624
Cfr13I GGNCC 2 cut(s) 451, 565
Csp6I GTAC 1 cut(s) 440
CviAII CATG 1 cut(s) 547
CviJI RGCY 8 cut(s) 39, 83, 113, 140, 153, 375, 453, 567
CviKI_1 RGCY 8 cut(s) 39, 83, 113, 140, 153, 375, 453, 567
CviQI GTAC 1 cut(s) 440
DdeI CTNAG 1 cut(s) 101
DinI GGCGCC 1 cut(s) 623
DpnI GATC 2 cut(s) 230, 408
DpnII GATC 2 cut(s) 228, 406
Eam1104I CTCTTC 7 cut(s) 15, 90, 130, 270, 548, 606, 611
EarI CTCTTC 7 cut(s) 15, 90, 130, 270, 548, 606, 611
Eco130I CCWWGG 1 cut(s) 625
EcoO109I RGGNCCY 1 cut(s) 565
EcoT14I CCWWGG 1 cut(s) 625
EgeI GGCGCC 1 cut(s) 623
EheI GGCGCC 1 cut(s) 623
ErhI CCWWGG 1 cut(s) 625
FaeI CATG 1 cut(s) 550
FaiI YATR 9 cut(s) 46, 71, 157, 338, 480, 511, 513, 534, 548
FalI AAGNNNNNCTT 6 cut(s) 215, 247, 238, 270, 579, 611
FaqI GGGAC 1 cut(s) 157
FatI CATG 1 cut(s) 546
FauNDI CATATG 1 cut(s) 511
Fnu4HI GCNGC 1 cut(s) 141
FokI GGATG 2 cut(s) 224, 477
Fsp4HI GCNGC 1 cut(s) 141
FspBI CTAG 2 cut(s) 365, 584
GlaI GCGC 2 cut(s) 541, 623
GluI GCNGC 1 cut(s) 141
HaeII RGCGCY 1 cut(s) 625
HaeIII GGCC 2 cut(s) 453, 567
HhaI GCGC 2 cut(s) 542, 624
Hin1I GRCGYC 1 cut(s) 622
Hin1II CATG 1 cut(s) 550
Hin6I GCGC 2 cut(s) 540, 622
HinP1I GCGC 2 cut(s) 540, 622
HincII GTYRAC 2 cut(s) 607, 640
HindII GTYRAC 2 cut(s) 607, 640
HphI GGTGA 3 cut(s) 139, 238, 284
Hpy166II GTNNAC 2 cut(s) 607, 640
Hpy188I TCNGA 1 cut(s) 196
Hpy8I GTNNAC 2 cut(s) 607, 640
Hpy99I CGWCG 1 cut(s) 200
HpyCH4V TGCA 3 cut(s) 143, 362, 515
HpyF3I CTNAG 1 cut(s) 101
Hsp92I GRCGYC 1 cut(s) 622
Hsp92II CATG 1 cut(s) 550
HspAI GCGC 2 cut(s) 540, 622
KasI GGCGCC 1 cut(s) 621
Kzo9I GATC 2 cut(s) 228, 406
LguI GCTCTTC 2 cut(s) 90, 130
LmnI GCTCC 1 cut(s) 110
LpnPI CCDG 7 cut(s) 105, 166, 256, 300, 405, 422, 428
Lsp1109I GCAGC 1 cut(s) 127
LweI GCATC 2 cut(s) 14, 84
MaeI CTAG 2 cut(s) 365, 584
MaeIII GTNAC 2 cut(s) 355, 527
MalI GATC 2 cut(s) 230, 408
MboI GATC 2 cut(s) 228, 406
MboII GAAGA 8 cut(s) 66, 77, 147, 246, 287, 565, 623, 628
MfeI CAATTG 1 cut(s) 521
MluCI AATT 2 cut(s) 31, 521
Mly113I GGCGCC 1 cut(s) 622
MmeI TCCRAC 2 cut(s) 219, 331
MnlI CCTC 5 cut(s) 96, 125, 549, 556, 612
MroXI GAANNNNTTC 1 cut(s) 250
MunI CAATTG 1 cut(s) 521
NarI GGCGCC 1 cut(s) 622
NdeI CATATG 1 cut(s) 511
NdeII GATC 2 cut(s) 228, 406
NlaIII CATG 1 cut(s) 550
NlaIV GGNNCC 2 cut(s) 193, 623
NmeAIII GCCGAG 1 cut(s) 59
NmuCI GTSAC 1 cut(s) 527
NspV TTCGAA 1 cut(s) 257
PciSI GCTCTTC 2 cut(s) 90, 130
PdmI GAANNNNTTC 1 cut(s) 250
PkrI GCNGC 1 cut(s) 142
PluTI GGCGCC 1 cut(s) 625
PspN4I GGNNCC 2 cut(s) 193, 623
PspPI GGNCC 2 cut(s) 451, 565
RsaI GTAC 1 cut(s) 441
RsaNI GTAC 1 cut(s) 440
SapI GCTCTTC 2 cut(s) 90, 130
SatI GCNGC 1 cut(s) 141
Sau3AI GATC 2 cut(s) 228, 406
Sau96I GGNCC 2 cut(s) 451, 565
SetI ASST 7 cut(s) 41, 115, 142, 155, 193, 228, 560
SfaNI GCATC 2 cut(s) 14, 84
SfoI GGCGCC 1 cut(s) 623
SfuI TTCGAA 1 cut(s) 257
SmlI CTYRAG 1 cut(s) 322
SmoI CTYRAG 1 cut(s) 322
Sse9I AATT 2 cut(s) 31, 521
SspDI GGCGCC 1 cut(s) 621
SspMI CTAG 2 cut(s) 365, 584
StyI CCWWGG 1 cut(s) 625
TaqI TCGA 3 cut(s) 218, 257, 487
TasI AATT 2 cut(s) 31, 521
TseFI GTSAC 1 cut(s) 527
TseI GCWGC 1 cut(s) 140
Tsp45I GTSAC 1 cut(s) 527
TspDTI ATGAA 2 cut(s) 227, 549
TspGWI ACGGA 1 cut(s) 213
XmnI GAANNNNTTC 1 cut(s) 250
XspI CTAG 2 cut(s) 365, 584
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.