Rh7BG013600

Protein of unknown function (DUF3007)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0007172
Physical Location & Seq
Reverse (-)
869116 .. 872177
3062 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG013600.1

Sequence Viewer

Length: 657 bp
ATGGCAGGGATGGCATCTCTTCCACATGGAAATACTGCAAATTGTAGCTTACTATGTGAAAGGGGACCTGTTTCGTTTATGGGTATCTCGGCTCTTCCATTGACACAACTGAGGGTCAGAGCTTTTGATGGTTTGGTGAGAGGTAGAGCTATAACTCACAGCTTATGTAGAAAGGAGACATCCCCTTTCTGGGGTAAAGGTTCCGACAGAATCCACAACATGATGTCAAAAAAGGTGGTCATTAACATCCCCAGAAATAGCAATTCTTCGAATTCTAATGGGGAAGAAGACAACTCCCCTGATAAGGCCAAGCAGCAAAAGTCTTTTGGATACTCGAGGAAGGATGTTATATTGATCGGAGTTGGAGTAACTGTTCTAGGTGTTGGCTTGAAAAGTGGATTAGAGTTTGTTGGAGTCGATCCTTTACAAGCAGGGAATGTCGTTCAACTGGTATTGGTGTTGGGCCTTACAATCGGATGGATTTCTACTTATATTTTTAGAGTTTCAAATAAGGAAATGACATATGCACAGCAATTACGTGACTATGAAAGCGCAGTCATGGAGAAGAGGTTAGAAGGCCTAACTGAAGCAGAACTAGAAGCGTTGCTTGAACAAGTTGATGAAGAGAAGAGGCGCCTTGGCGAGAAAGTAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3007

Protein Analysis

218

Amino Acids

23.92

Weight (kDa)

8.76

Isoelectric Point (pI)

36.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3007 PF11460 112 - 207 2.6e-34 Protein of unknown function (DUF3007)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 633
AclWI GGATC 1 cut(s) 413
AcsI RAATTY 1 cut(s) 271
AcuI CTGAAG 1 cut(s) 606
AcyI GRCGYC 1 cut(s) 634
AfiI CCNNNNNNNGG 4 cut(s) 189, 190, 191, 304
AgsI TTSAA 4 cut(s) 391, 446, 507, 611
AloI GAACNNNNNNTCC 2 cut(s) 357, 389
AluBI AGCT 4 cut(s) 48, 122, 149, 162
AluI AGCT 4 cut(s) 48, 122, 149, 162
Alw26I GTCTC 1 cut(s) 170
AlwI GGATC 1 cut(s) 413
Ama87I CYCGRG 1 cut(s) 334
AoxI GGCC 3 cut(s) 306, 463, 577
ApeKI GCWGC 1 cut(s) 313
ApoI RAATTY 1 cut(s) 271
AspLEI GCGC 2 cut(s) 554, 636
AspS9I GGNCC 2 cut(s) 65, 463
AsuHPI GGTGA 1 cut(s) 148
AsuII TTCGAA 1 cut(s) 269
AvaI CYCGRG 1 cut(s) 334
AvaII GGWCC 1 cut(s) 65
BanI GGYRCC 1 cut(s) 633
BbsI GAAGAC 1 cut(s) 294
BbvI GCAGC 1 cut(s) 325
BccI CCATC 3 cut(s) 4, 122, 471
BciVI GTATCC 1 cut(s) 323
BcoDI GTCTC 1 cut(s) 170
BfaI CTAG 2 cut(s) 377, 596
BfoI RGCGCY 1 cut(s) 637
BfuI GTATCC 1 cut(s) 323
BisI GCNGC 1 cut(s) 314
BlsI GCNGC 1 cut(s) 315
Bme18I GGWCC 1 cut(s) 65
BmeT110I CYCGRG 1 cut(s) 334
BmgT120I GGNCC 2 cut(s) 65, 463
BmiI GGNNCC 3 cut(s) 66, 202, 635
BmsI GCATC 1 cut(s) 23
BpiI GAAGAC 1 cut(s) 294
Bpu14I TTCGAA 1 cut(s) 269
BsaAI YACGTR 1 cut(s) 539
BsaHI GRCGYC 1 cut(s) 634
BsaJI CCNNGG 1 cut(s) 637
BsaXI ACNNNNNCTCC 6 cut(s) 351, 357, 381, 387, 554, 584
Bsc4I CCNNNNNNNGG 4 cut(s) 189, 190, 191, 304
Bse1I ACTGG 1 cut(s) 453
BseDI CCNNGG 1 cut(s) 637
BseGI GGATG 5 cut(s) 15, 179, 246, 349, 482
BseLI CCNNNNNNNGG 4 cut(s) 189, 190, 191, 304
BseMII CTCAG 1 cut(s) 101
BseNI ACTGG 1 cut(s) 453
BseXI GCAGC 1 cut(s) 325
BshFI GGCC 3 cut(s) 308, 465, 579
BshNI GGYRCC 1 cut(s) 633
BsiHKCI CYCGRG 1 cut(s) 334
BslFI GGGAC 1 cut(s) 78
BslI CCNNNNNNNGG 4 cut(s) 189, 190, 191, 304
BsmAI GTCTC 1 cut(s) 170
BsmFI GGGAC 1 cut(s) 78
BsnI GGCC 3 cut(s) 308, 465, 579
BsoBI CYCGRG 1 cut(s) 334
Bsp119I TTCGAA 1 cut(s) 269
Bsp143I GATC 2 cut(s) 354, 418
BspANI GGCC 3 cut(s) 308, 465, 579
BspCNI CTCAG 1 cut(s) 102
BspLI GGNNCC 3 cut(s) 66, 202, 635
BspPI GGATC 1 cut(s) 413
BspQI GCTCTTC 1 cut(s) 99
BspT104I TTCGAA 1 cut(s) 269
BspT107I GGYRCC 1 cut(s) 633
BsrI ACTGG 1 cut(s) 453
BssECI CCNNGG 1 cut(s) 637
BssMI GATC 2 cut(s) 354, 418
BssNI GRCGYC 1 cut(s) 634
BssT1I CCWWGG 1 cut(s) 637
Bst4CI ACNGT 1 cut(s) 373
Bst6I CTCTTC 5 cut(s) 24, 99, 560, 618, 623
BstACI GRCGYC 1 cut(s) 634
BstBAI YACGTR 1 cut(s) 539
BstBI TTCGAA 1 cut(s) 269
BstDEI CTNAG 1 cut(s) 110
BstF5I GGATG 5 cut(s) 15, 179, 246, 349, 482
BstH2I RGCGCY 1 cut(s) 637
BstHHI GCGC 2 cut(s) 554, 636
BstKTI GATC 2 cut(s) 357, 421
BstMAI GTCTC 1 cut(s) 170
BstMBI GATC 2 cut(s) 354, 418
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstV1I GCAGC 1 cut(s) 325
BstV2I GAAGAC 1 cut(s) 294
BsuI GTATCC 1 cut(s) 323
BsuRI GGCC 3 cut(s) 308, 465, 579
BtsCI GGATG 5 cut(s) 15, 179, 246, 349, 482
CfoI GCGC 2 cut(s) 554, 636
Cfr13I GGNCC 2 cut(s) 65, 463
CspCI CAANNNNNGTGG 2 cut(s) 216, 251
CviAII CATG 3 cut(s) 26, 220, 559
CviJI RGCY 9 cut(s) 48, 92, 122, 149, 162, 308, 387, 465, 579
CviKI_1 RGCY 9 cut(s) 48, 92, 122, 149, 162, 308, 387, 465, 579
DdeI CTNAG 1 cut(s) 110
DinI GGCGCC 1 cut(s) 635
DpnI GATC 2 cut(s) 356, 420
DpnII GATC 2 cut(s) 354, 418
Eam1104I CTCTTC 5 cut(s) 24, 99, 560, 618, 623
EarI CTCTTC 5 cut(s) 24, 99, 560, 618, 623
Eco130I CCWWGG 1 cut(s) 637
Eco147I AGGCCT 1 cut(s) 579
Eco47I GGWCC 1 cut(s) 65
Eco57I CTGAAG 1 cut(s) 606
Eco88I CYCGRG 1 cut(s) 334
EcoO109I RGGNCCY 1 cut(s) 65
EcoRI GAATTC 1 cut(s) 271
EcoT14I CCWWGG 1 cut(s) 637
EgeI GGCGCC 1 cut(s) 635
EheI GGCGCC 1 cut(s) 635
ErhI CCWWGG 1 cut(s) 637
FaeI CATG 3 cut(s) 29, 223, 562
FalI AAGNNNNNCTT 2 cut(s) 591, 623
FaqI GGGAC 1 cut(s) 78
FatI CATG 3 cut(s) 25, 219, 558
FauNDI CATATG 1 cut(s) 523
Fnu4HI GCNGC 1 cut(s) 314
FokI GGATG 5 cut(s) 22, 166, 233, 356, 489
Fsp4HI GCNGC 1 cut(s) 314
FspBI CTAG 2 cut(s) 377, 596
GlaI GCGC 2 cut(s) 553, 635
GluI GCNGC 1 cut(s) 314
HaeII RGCGCY 1 cut(s) 637
HaeIII GGCC 3 cut(s) 308, 465, 579
HhaI GCGC 2 cut(s) 554, 636
Hin1I GRCGYC 1 cut(s) 634
Hin1II CATG 3 cut(s) 29, 223, 562
Hin6I GCGC 2 cut(s) 552, 634
HinP1I GCGC 2 cut(s) 552, 634
HinfI GANTC 2 cut(s) 210, 414
HphI GGTGA 1 cut(s) 148
Hpy188I TCNGA 4 cut(s) 119, 205, 359, 476
HpyAV CCTTC 2 cut(s) 334, 569
HpyCH4III ACNGT 1 cut(s) 373
HpyCH4IV ACGT 1 cut(s) 538
HpyCH4V TGCA 2 cut(s) 38, 527
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 1 cut(s) 110
HpySE526I ACGT 1 cut(s) 538
Hsp92I GRCGYC 1 cut(s) 634
Hsp92II CATG 3 cut(s) 29, 223, 562
HspAI GCGC 2 cut(s) 552, 634
KasI GGCGCC 1 cut(s) 633
Kzo9I GATC 2 cut(s) 354, 418
LguI GCTCTTC 1 cut(s) 99
LpnPI CCDG 6 cut(s) 81, 175, 265, 312, 417, 434
Lsp1109I GCAGC 1 cut(s) 325
LweI GCATC 1 cut(s) 23
MaeI CTAG 2 cut(s) 377, 596
MaeII ACGT 1 cut(s) 538
MaeIII GTNAC 2 cut(s) 367, 539
MalI GATC 2 cut(s) 356, 420
MboI GATC 2 cut(s) 354, 418
MboII GAAGA 8 cut(s) 11, 86, 258, 296, 299, 577, 635, 640
MluCI AATT 5 cut(s) 40, 262, 271, 533, 652
Mly113I GGCGCC 1 cut(s) 634
MlyI GAGTC 1 cut(s) 423
MmeI TCCRAC 3 cut(s) 228, 343, 391
MnlI CCTC 5 cut(s) 105, 134, 330, 561, 624
MseI TTAA 2 cut(s) 243, 655
MwoI GCNNNNNNNGC 1 cut(s) 11
NarI GGCGCC 1 cut(s) 634
NdeI CATATG 1 cut(s) 523
NdeII GATC 2 cut(s) 354, 418
NlaIII CATG 3 cut(s) 29, 223, 562
NlaIV GGNNCC 3 cut(s) 66, 202, 635
NmeAIII GCCGAG 1 cut(s) 68
NmuCI GTSAC 1 cut(s) 539
NspV TTCGAA 1 cut(s) 269
PaeR7I CTCGAG 1 cut(s) 334
PceI AGGCCT 1 cut(s) 579
PciSI GCTCTTC 1 cut(s) 99
PfeI GAWTC 1 cut(s) 210
PkrI GCNGC 1 cut(s) 315
PleI GAGTC 1 cut(s) 422
PluTI GGCGCC 1 cut(s) 637
PpsI GAGTC 1 cut(s) 422
Ppu21I YACGTR 1 cut(s) 539
PpuMI RGGWCCY 1 cut(s) 65
Psp5II RGGWCCY 1 cut(s) 65
PspN4I GGNNCC 3 cut(s) 66, 202, 635
PspPI GGNCC 2 cut(s) 65, 463
PspPPI RGGWCCY 1 cut(s) 65
PspXI VCTCGAGB 1 cut(s) 334
SapI GCTCTTC 1 cut(s) 99
SaqAI TTAA 2 cut(s) 243, 655
SatI GCNGC 1 cut(s) 314
Sau3AI GATC 2 cut(s) 354, 418
Sau96I GGNCC 2 cut(s) 65, 463
SchI GAGTC 1 cut(s) 423
SfaNI GCATC 1 cut(s) 23
SfoI GGCGCC 1 cut(s) 635
Sfr274I CTCGAG 1 cut(s) 334
SfuI TTCGAA 1 cut(s) 269
SinI GGWCC 1 cut(s) 65
SlaI CTCGAG 1 cut(s) 334
SmlI CTYRAG 1 cut(s) 334
SmoI CTYRAG 1 cut(s) 334
Sse9I AATT 5 cut(s) 40, 262, 271, 533, 652
SseBI AGGCCT 1 cut(s) 579
SspDI GGCGCC 1 cut(s) 633
SspMI CTAG 2 cut(s) 377, 596
StuI AGGCCT 1 cut(s) 579
StyI CCWWGG 1 cut(s) 637
TaaI ACNGT 1 cut(s) 373
TaiI ACGT 1 cut(s) 541
TaqI TCGA 3 cut(s) 269, 335, 417
TasI AATT 5 cut(s) 40, 262, 271, 533, 652
TfiI GAWTC 1 cut(s) 210
Tru1I TTAA 2 cut(s) 243, 655
Tru9I TTAA 2 cut(s) 243, 655
TseFI GTSAC 1 cut(s) 539
TseI GCWGC 1 cut(s) 313
Tsp45I GTSAC 1 cut(s) 539
TspDTI ATGAA 2 cut(s) 561, 636
VpaK11BI GGWCC 1 cut(s) 65
XapI RAATTY 1 cut(s) 271
XhoI CTCGAG 1 cut(s) 334
XspI CTAG 2 cut(s) 377, 596
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.