Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0007172

Physical Location & Seq

Genomic Coordinates Reverse (-)

55509144 .. 55509950

Gene Structure 807 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0414900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGGCAAAGACCTCGTTCGTGTTCATTTTCGCATTGGTGCTGATCATATCGGTTCACATTCATTCGGTGTTTGGTGATGAAGACAAAGACATGATTGACAAAGCAAGCGACGCTGCGGGAAAGGCAAAGAATGCAGCGGAGAATTTTGGACACAAGGCTTCCAATGCCGCCCAAGAAGCTAGGGAAACCGGTTCATCATGGGCTGATTGGTTTAAAGGCAAATTCTCAGATATGGGCGGAGACGATGATGCAGATTCACCTTCCGGAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3007

Protein Analysis

90

Amino Acids

9.58

Weight (kDa)

4.76

Isoelectric Point (pI)

23.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007172)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17930
fragaria_vesca	FvH4_5g17480 FvH4_5g17480 FvH4_5g17480 FvH4_5g17480
malus_domestica	MD06G1228200.v1.1
prunus_persica	Prupe.5G234700_v2.0.a1 Prupe.5G234700_v2.0.a1 Prupe.5G234700_v2.0.a1
pyrus_communis	pycom06g20450 pycom14g19830
rosa_chinensis	RchiOBHm_Chr7g0178211
rosa_laevigata	RLG00000005463
rosa_multiflora	Rmu_sc0007855.1_g000005
rosa_roxburghii	Rroxscaffold_3G00275080
rosa_rugosa	Rorug06G0414600 Rorug06G0414700.1 Rorug06G0414800 Rorug06G0414900 Rorug06G0415000.1
rosa_samantha	Rh7AG013800 Rh7BG013600 Rh7CG013500 Rh7DG013800
rosa_wichuraiana	Rw7G001100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	263
AciI	CCGC	4 cut(s)	116, 137, 168, 237
AcsI	RAATTY	2 cut(s)	142, 221
AgeI	ACCGGT	1 cut(s)	188
AluBI	AGCT	1 cut(s)	179
AluI	AGCT	1 cut(s)	179
Alw26I	GTCTC	1 cut(s)	234
Aor13HI	TCCGGA	1 cut(s)	263
ApeKI	GCWGC	2 cut(s)	113, 134
ApoI	RAATTY	2 cut(s)	142, 221
AsiGI	ACCGGT	1 cut(s)	188
AsuHPI	GGTGA	2 cut(s)	86, 249
BbsI	GAAGAC	1 cut(s)	87
BbvI	GCAGC	2 cut(s)	100, 146
BcgI	CGANNNNNNTGC	1 cut(s)	28
BclI	TGATCA	1 cut(s)	42
BcoDI	GTCTC	1 cut(s)	234
BfaI	CTAG	1 cut(s)	180
BisI	GCNGC	3 cut(s)	114, 135, 168
BlsI	GCNGC	3 cut(s)	115, 136, 169
BmsI	GCATC	1 cut(s)	238
BpiI	GAAGAC	1 cut(s)	87
BsaWI	WCCGGW	2 cut(s)	188, 263
Bse118I	RCCGGY	1 cut(s)	188
BseAI	TCCGGA	1 cut(s)	263
BseMII	CTCAG	1 cut(s)	240
BseXI	GCAGC	2 cut(s)	100, 146
BshTI	ACCGGT	1 cut(s)	188
BsiSI	CCGG	2 cut(s)	189, 264
BsmAI	GTCTC	1 cut(s)	234
BsmBI	CGTCTC	1 cut(s)	234
BsmI	GAATGC	1 cut(s)	136
Bsp13I	TCCGGA	1 cut(s)	263
Bsp143I	GATC	1 cut(s)	42
BspACI	CCGC	4 cut(s)	116, 137, 168, 237
BspCNI	CTCAG	1 cut(s)	239
BspEI	TCCGGA	1 cut(s)	263
BsrFI	RCCGGY	1 cut(s)	188
BssAI	RCCGGY	1 cut(s)	188
BssMI	GATC	1 cut(s)	42
BstAPI	GCANNNNNTGC	1 cut(s)	131
BstC8I	GCNNGC	1 cut(s)	106
BstDEI	CTNAG	1 cut(s)	226
BstKTI	GATC	1 cut(s)	45
BstMAI	GTCTC	1 cut(s)	234
BstMBI	GATC	1 cut(s)	42
BstMWI	GCNNNNNNNGC	5 cut(s)	110, 122, 131, 164, 176
BstV1I	GCAGC	2 cut(s)	100, 146
BstV2I	GAAGAC	1 cut(s)	87
Cac8I	GCNNGC	1 cut(s)	106
Cfr10I	RCCGGY	1 cut(s)	188
CseI	GACGC	1 cut(s)	119
CspAI	ACCGGT	1 cut(s)	188
CviAII	CATG	2 cut(s)	91, 198
CviJI	RGCY	3 cut(s)	158, 179, 203
CviKI_1	RGCY	3 cut(s)	158, 179, 203
DdeI	CTNAG	1 cut(s)	226
DpnI	GATC	1 cut(s)	44
DpnII	GATC	1 cut(s)	42
DraI	TTTAAA	1 cut(s)	214
EciI	GGCGGA	1 cut(s)	252
Esp3I	CGTCTC	1 cut(s)	234
FaeI	CATG	2 cut(s)	94, 201
FaiI	YATR	4 cut(s)	47, 92, 199, 233
FatI	CATG	2 cut(s)	90, 197
FauI	CCCGC	1 cut(s)	109
FbaI	TGATCA	1 cut(s)	42
Fnu4HI	GCNGC	3 cut(s)	114, 135, 168
Fsp4HI	GCNGC	3 cut(s)	114, 135, 168
FspBI	CTAG	1 cut(s)	180
GluI	GCNGC	3 cut(s)	114, 135, 168
HapII	CCGG	2 cut(s)	189, 264
HgaI	GACGC	1 cut(s)	119
Hin1II	CATG	2 cut(s)	94, 201
HinfI	GANTC	1 cut(s)	254
HpaII	CCGG	2 cut(s)	189, 264
HphI	GGTGA	2 cut(s)	86, 249
Hpy166II	GTNNAC	1 cut(s)	55
Hpy188I	TCNGA	1 cut(s)	229
Hpy188III	TCNNGA	1 cut(s)	264
Hpy8I	GTNNAC	1 cut(s)	55
Hpy99I	CGWCG	1 cut(s)	113
HpyAV	CCTTC	1 cut(s)	270
HpyCH4V	TGCA	2 cut(s)	134, 251
HpyF10VI	GCNNNNNNNGC	5 cut(s)	110, 122, 131, 164, 176
HpyF3I	CTNAG	1 cut(s)	226
Hsp92II	CATG	2 cut(s)	94, 201
Kpn2I	TCCGGA	1 cut(s)	263
Ksp22I	TGATCA	1 cut(s)	42
Kzo9I	GATC	1 cut(s)	42
LpnPI	CCDG	1 cut(s)	202
Lsp1109I	GCAGC	2 cut(s)	100, 146
LweI	GCATC	1 cut(s)	238
MaeI	CTAG	1 cut(s)	180
MalI	GATC	1 cut(s)	44
MboI	GATC	1 cut(s)	42
MboII	GAAGA	1 cut(s)	92
MluCI	AATT	2 cut(s)	142, 221
MnlI	CCTC	1 cut(s)	22
MroI	TCCGGA	1 cut(s)	263
MseI	TTAA	1 cut(s)	213
MspA1I	CMGCKG	1 cut(s)	137
MspI	CCGG	2 cut(s)	189, 264
Mva1269I	GAATGC	1 cut(s)	136
MwoI	GCNNNNNNNGC	5 cut(s)	110, 122, 131, 164, 176
NdeII	GATC	1 cut(s)	42
NlaIII	CATG	2 cut(s)	94, 201
PctI	GAATGC	1 cut(s)	136
PfeI	GAWTC	1 cut(s)	254
PinAI	ACCGGT	1 cut(s)	188
PkrI	GCNGC	3 cut(s)	115, 136, 169
SaqAI	TTAA	1 cut(s)	213
SatI	GCNGC	3 cut(s)	114, 135, 168
Sau3AI	GATC	1 cut(s)	42
SetI	ASST	3 cut(s)	14, 181, 262
SfaNI	GCATC	1 cut(s)	238
Sse9I	AATT	2 cut(s)	142, 221
SsiI	CCGC	4 cut(s)	116, 137, 168, 237
SspMI	CTAG	1 cut(s)	180
TasI	AATT	2 cut(s)	142, 221
TauI	GCSGC	1 cut(s)	170
TfiI	GAWTC	1 cut(s)	254
Tru1I	TTAA	1 cut(s)	213
Tru9I	TTAA	1 cut(s)	213
TseI	GCWGC	2 cut(s)	113, 134
TspDTI	ATGAA	4 cut(s)	13, 50, 93, 183
XapI	RAATTY	2 cut(s)	142, 221
XspI	CTAG	1 cut(s)	180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.