AT3G18360

VQ motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0017544
Physical Location & Seq
Reverse (-)
6300620 .. 6301812
1193 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G18360.1

Sequence Viewer

Length: 858 bp
ATGAGCTCAACGTACAAGGACAACCATCCGTACCACCACCACCCTCACCATCACCATCACCATCCAAAGAGAGAACCCAATGAAAACAACTCCGGAATCTTATACACTCCCTCACCTTCACCGTCACCGCCAACTTTAAAAGTCAACAAAGACTCTCACGTTATTAAAAAACCACCGTCTCCGTCTTCTTTCTCCTCCGCGGCTAAGCCTCGTCACCCGGTGATCATTTACACACACACTCCAAGAATCATACACACTAATCCTAAAGATTTCATGGCTCTTGTTCAAAAACTCACCGGAATGACCCACTCCGACGAAGATCTCGGCGGTGGTAACGCAATGACCGATCCCGGGGTGGTAAAATCAATCAACCGAACCGTCTCTGAACCAACCGTCGACAGAAAAAACAACCGCAATCGCTGCGGCGGCGGTAATAATTACCTTAGAAACTACTCCGGTGCCGGAAACGGAAAGGGGATATTTTTTAATAACACGATGATAAGTGAAGATAGTGAATCGTCGTCGGTGATAACAACTGAGGAGAACATCGGAGAACATGGACAGGTTAATTCTTCTCTTCCGTATTCAGCGGTGGCTATTCCTCCACAGCCACCGCCTCATCCTCCTCCACCTCCGCCGCCACCGTCTATGTACGACGCTGCGGGGATAAACTACGGTGCTTATTTACCGACATTTCCGATTTTCCCGCCGGCGAATCCAGCTGATAATTTCTTATGCGGTAATCAACCGTTTGCGAATTTTGATGATCCGCTTTTCTTCGCGCCTAATATGAGAAGCTCTTTCTCTTCTTCTTCATCTTCTGGCTTCGATGGCTTGACGGAGTTTCGCGATTTTTAA

Protein Analysis

285

Amino Acids

31.11

Weight (kDa)

6.78

Isoelectric Point (pI)

55.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VQ PF05678 78 - 102 1.8e-10 VQ motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017544)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18360
fragaria_vesca FvH4_5g11980
prunus_persica Prupe.5G222000_v2.0.a1
rosa_laevigata RLG00000004902
rosa_multiflora Rmu_sc0010190.1_g000012
rosa_roxburghii Rroxscaffold_3G00268840
rosa_rugosa Rorug06G0470100
rosa_samantha Rh7AG072600 Rh7BG075200 Rh7CG075400 Rh7DG075100
rosa_wichuraiana Rw7G006250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 458
AccI GTMKAC 1 cut(s) 396
AccII CGCG 3 cut(s) 200, 782, 849
AccIII TCCGGA 1 cut(s) 92
AclWI GGATC 2 cut(s) 341, 761
AcsI RAATTY 1 cut(s) 757
AdeI CACNNNGTG 1 cut(s) 220
AfaI GTAC 3 cut(s) 14, 32, 653
AfiI CCNNNNNNNGG 1 cut(s) 351
AgsI TTSAA 1 cut(s) 287
AluBI AGCT 3 cut(s) 6, 722, 798
AluI AGCT 3 cut(s) 6, 722, 798
Alw21I GWGCWC 1 cut(s) 8
Alw26I GTCTC 2 cut(s) 183, 385
AlwI GGATC 2 cut(s) 341, 761
Ama87I CYCGRG 1 cut(s) 350
Aor13HI TCCGGA 1 cut(s) 92
ApeKI GCWGC 2 cut(s) 420, 659
ApoI RAATTY 1 cut(s) 757
AspLEI GCGC 1 cut(s) 784
AsuC2I CCSGG 3 cut(s) 218, 351, 352
AvaI CYCGRG 1 cut(s) 350
BanI GGYRCC 1 cut(s) 458
BanII GRGCYC 1 cut(s) 8
BbsI GAAGAC 1 cut(s) 177
Bbv12I GWGCWC 1 cut(s) 8
BbvI GCAGC 2 cut(s) 407, 646
BccI CCATC 5 cut(s) 33, 57, 63, 69, 824
BclI TGATCA 1 cut(s) 222
BcnI CCSGG 3 cut(s) 218, 351, 352
BcoDI GTCTC 2 cut(s) 183, 385
BglII AGATCT 1 cut(s) 319
BisI GCNGC 6 cut(s) 201, 421, 424, 427, 638, 660
BlpI GCTNAGC 1 cut(s) 204
BlsI GCNGC 6 cut(s) 202, 422, 425, 428, 639, 661
Bme1390I CCNGG 3 cut(s) 218, 351, 352
BmeT110I CYCGRG 1 cut(s) 350
BmiI GGNNCC 1 cut(s) 460
BmrFI CCNGG 3 cut(s) 218, 351, 352
BpiI GAAGAC 1 cut(s) 177
Bpu1102I GCTNAGC 1 cut(s) 204
BpuMI CCSGG 3 cut(s) 218, 351, 352
BsaJI CCNNGG 3 cut(s) 198, 350, 351
BsaWI WCCGGW 3 cut(s) 92, 296, 455
BsaXI ACNNNNNCTCC 2 cut(s) 223, 253
Bsc4I CCNNNNNNNGG 1 cut(s) 351
Bse118I RCCGGY 1 cut(s) 709
Bse3DI GCAATG 1 cut(s) 345
BseAI TCCGGA 1 cut(s) 92
BseDI CCNNGG 3 cut(s) 198, 350, 351
BseGI GGATG 3 cut(s) 25, 61, 619
BseLI CCNNNNNNNGG 1 cut(s) 351
BseMI GCAATG 1 cut(s) 345
BseMII CTCAG 1 cut(s) 528
BseRI GAGGAG 3 cut(s) 184, 554, 615
BseXI GCAGC 2 cut(s) 407, 646
Bsh1236I CGCG 3 cut(s) 200, 782, 849
BshNI GGYRCC 1 cut(s) 458
BsiHKAI GWGCWC 1 cut(s) 8
BsiHKCI CYCGRG 1 cut(s) 350
BsiSI CCGG 7 cut(s) 93, 218, 297, 351, 456, 462, 710
BslI CCNNNNNNNGG 1 cut(s) 351
BsmAI GTCTC 2 cut(s) 183, 385
BsmBI CGTCTC 2 cut(s) 183, 385
BsoBI CYCGRG 1 cut(s) 350
Bsp1286I GDGCHC 1 cut(s) 8
Bsp13I TCCGGA 1 cut(s) 92
Bsp143I GATC 4 cut(s) 222, 319, 346, 766
Bsp1720I GCTNAGC 1 cut(s) 204
Bsp68I TCGCGA 1 cut(s) 849
BspCNI CTCAG 1 cut(s) 529
BspEI TCCGGA 1 cut(s) 92
BspFNI CGCG 3 cut(s) 200, 782, 849
BspLI GGNNCC 1 cut(s) 460
BspPI GGATC 2 cut(s) 341, 761
BspT107I GGYRCC 1 cut(s) 458
BsrDI GCAATG 1 cut(s) 345
BsrFI RCCGGY 1 cut(s) 709
BssAI RCCGGY 1 cut(s) 709
BssECI CCNNGG 3 cut(s) 198, 350, 351
BssMI GATC 4 cut(s) 222, 319, 346, 766
Bst4CI ACNGT 7 cut(s) 123, 177, 379, 394, 645, 677, 750
Bst6I CTCTTC 2 cut(s) 582, 811
BstAPI GCANNNNNTGC 1 cut(s) 420
BstC8I GCNNGC 1 cut(s) 711
BstDEI CTNAG 3 cut(s) 204, 443, 537
BstDSI CCRYGG 1 cut(s) 198
BstF5I GGATG 3 cut(s) 25, 61, 619
BstFNI CGCG 3 cut(s) 200, 782, 849
BstHHI GCGC 1 cut(s) 784
BstKTI GATC 4 cut(s) 225, 322, 349, 769
BstMAI GTCTC 2 cut(s) 183, 385
BstMBI GATC 4 cut(s) 222, 319, 346, 766
BstMWI GCNNNNNNNGC 4 cut(s) 420, 426, 719, 831
BstSCI CCNGG 3 cut(s) 216, 349, 350
BstUI CGCG 3 cut(s) 200, 782, 849
BstV1I GCAGC 2 cut(s) 407, 646
BstV2I GAAGAC 1 cut(s) 177
BstX2I RGATCY 1 cut(s) 319
BstYI RGATCY 1 cut(s) 319
BtgI CCRYGG 1 cut(s) 198
BtsCI GGATG 3 cut(s) 25, 61, 619
BtuMI TCGCGA 1 cut(s) 849
Cac8I GCNNGC 1 cut(s) 711
CfoI GCGC 1 cut(s) 784
Cfr10I RCCGGY 1 cut(s) 709
Cfr42I CCGCGG 1 cut(s) 201
Cfr9I CCCGGG 1 cut(s) 350
CseI GACGC 1 cut(s) 665
Csp6I GTAC 3 cut(s) 13, 31, 652
CviAII CATG 2 cut(s) 274, 557
CviQI GTAC 3 cut(s) 13, 31, 652
DdeI CTNAG 3 cut(s) 204, 443, 537
DpnI GATC 4 cut(s) 224, 321, 348, 768
DpnII GATC 4 cut(s) 222, 319, 346, 766
DraI TTTAAA 1 cut(s) 138
DraIII CACNNNGTG 1 cut(s) 220
Eam1104I CTCTTC 2 cut(s) 582, 811
EarI CTCTTC 2 cut(s) 582, 811
EciI GGCGGA 1 cut(s) 624
Ecl136II GAGCTC 1 cut(s) 6
Eco24I GRGCYC 1 cut(s) 8
Eco53kI GAGCTC 1 cut(s) 6
Eco88I CYCGRG 1 cut(s) 350
EcoICRI GAGCTC 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 8
Esp3I CGTCTC 2 cut(s) 183, 385
FaeI CATG 2 cut(s) 277, 560
FaiI YATR 7 cut(s) 103, 251, 275, 558, 650, 736, 791
FatI CATG 2 cut(s) 273, 556
FauI CCCGC 2 cut(s) 655, 714
FbaI TGATCA 1 cut(s) 222
FblI GTMKAC 1 cut(s) 396
Fnu4HI GCNGC 6 cut(s) 201, 421, 424, 427, 638, 660
FokI GGATG 3 cut(s) 12, 48, 606
FriOI GRGCYC 1 cut(s) 8
Fsp4HI GCNGC 6 cut(s) 201, 421, 424, 427, 638, 660
GlaI GCGC 1 cut(s) 783
GluI GCNGC 6 cut(s) 201, 421, 424, 427, 638, 660
HapII CCGG 7 cut(s) 93, 218, 297, 351, 456, 462, 710
HgaI GACGC 1 cut(s) 665
HhaI GCGC 1 cut(s) 784
Hin1II CATG 2 cut(s) 277, 560
Hin6I GCGC 1 cut(s) 782
HinP1I GCGC 1 cut(s) 782
HincII GTYRAC 2 cut(s) 145, 397
HindII GTYRAC 2 cut(s) 145, 397
HinfI GANTC 5 cut(s) 96, 152, 246, 515, 715
HpaII CCGG 7 cut(s) 93, 218, 297, 351, 456, 462, 710
Hpy166II GTNNAC 2 cut(s) 145, 397
Hpy188I TCNGA 4 cut(s) 313, 385, 551, 699
Hpy188III TCNNGA 2 cut(s) 93, 848
Hpy8I GTNNAC 2 cut(s) 145, 397
Hpy99I CGWCG 5 cut(s) 317, 398, 523, 526, 659
HpyAV CCTTC 1 cut(s) 126
HpyCH4III ACNGT 7 cut(s) 123, 177, 379, 394, 645, 677, 750
HpyCH4IV ACGT 2 cut(s) 11, 159
HpyF10VI GCNNNNNNNGC 4 cut(s) 420, 426, 719, 831
HpyF3I CTNAG 3 cut(s) 204, 443, 537
HpySE526I ACGT 2 cut(s) 11, 159
Hsp92II CATG 2 cut(s) 277, 560
HspAI GCGC 1 cut(s) 782
Kpn2I TCCGGA 1 cut(s) 92
KroI GCCGGC 1 cut(s) 709
KroNI GCCGGC 1 cut(s) 711
Ksp22I TGATCA 1 cut(s) 222
KspI CCGCGG 1 cut(s) 201
Kzo9I GATC 4 cut(s) 222, 319, 346, 766
Lsp1109I GCAGC 2 cut(s) 407, 646
MaeII ACGT 2 cut(s) 11, 159
MaeIII GTNAC 3 cut(s) 123, 212, 332
MalI GATC 4 cut(s) 224, 321, 348, 768
MboI GATC 4 cut(s) 222, 319, 346, 766
MflI RGATCY 1 cut(s) 319
MhlI GDGCHC 1 cut(s) 8
MluCI AATT 4 cut(s) 436, 568, 727, 757
MlyI GAGTC 1 cut(s) 146
MmeI TCCRAC 1 cut(s) 336
MreI CGCCGGCG 1 cut(s) 709
MroI TCCGGA 1 cut(s) 92
MroNI GCCGGC 1 cut(s) 709
MseI TTAA 5 cut(s) 137, 165, 486, 567, 856
MslI CAYNNNNRTG 1 cut(s) 299
MspA1I CMGCKG 3 cut(s) 200, 590, 722
MspI CCGG 7 cut(s) 93, 218, 297, 351, 456, 462, 710
MspR9I CCNGG 3 cut(s) 218, 351, 352
MvnI CGCG 3 cut(s) 200, 782, 849
MwoI GCNNNNNNNGC 4 cut(s) 420, 426, 719, 831
NaeI GCCGGC 1 cut(s) 711
NciI CCSGG 3 cut(s) 218, 351, 352
NdeII GATC 4 cut(s) 222, 319, 346, 766
NgoMIV GCCGGC 1 cut(s) 709
NlaIII CATG 2 cut(s) 277, 560
NlaIV GGNNCC 1 cut(s) 460
NmeAIII GCCGAG 1 cut(s) 303
NmuCI GTSAC 2 cut(s) 123, 212
NruI TCGCGA 1 cut(s) 849
PcsI WCGNNNNNNNCGW 1 cut(s) 342
PdiI GCCGGC 1 cut(s) 711
PfeI GAWTC 4 cut(s) 96, 246, 515, 715
PkrI GCNGC 6 cut(s) 202, 422, 425, 428, 639, 661
PleI GAGTC 1 cut(s) 146
PpsI GAGTC 1 cut(s) 146
Psp124BI GAGCTC 1 cut(s) 8
PspN4I GGNNCC 1 cut(s) 460
PsuI RGATCY 1 cut(s) 319
PvuII CAGCTG 1 cut(s) 722
RruI TCGCGA 1 cut(s) 849
RsaI GTAC 3 cut(s) 14, 32, 653
RsaNI GTAC 3 cut(s) 13, 31, 652
RseI CAYNNNNRTG 1 cut(s) 299
SacI GAGCTC 1 cut(s) 8
SacII CCGCGG 1 cut(s) 201
SalI GTCGAC 1 cut(s) 395
SaqAI TTAA 5 cut(s) 137, 165, 486, 567, 856
SatI GCNGC 6 cut(s) 201, 421, 424, 427, 638, 660
Sau3AI GATC 4 cut(s) 222, 319, 346, 766
SchI GAGTC 1 cut(s) 146
ScrFI CCNGG 3 cut(s) 218, 351, 352
SduI GDGCHC 1 cut(s) 8
SetI ASST 9 cut(s) 8, 14, 118, 162, 444, 567, 634, 724, 800
Sfr303I CCGCGG 1 cut(s) 201
SgrAI CRCCGGYG 1 cut(s) 709
SgrBI CCGCGG 1 cut(s) 201
SmaI CCCGGG 1 cut(s) 352
SmiMI CAYNNNNRTG 1 cut(s) 299
Sse9I AATT 4 cut(s) 436, 568, 727, 757
SstI GAGCTC 1 cut(s) 8
StyD4I CCNGG 3 cut(s) 216, 349, 350
TaaI ACNGT 7 cut(s) 123, 177, 379, 394, 645, 677, 750
TaiI ACGT 2 cut(s) 14, 162
TaqI TCGA 2 cut(s) 396, 828
TaqII GACCGA 1 cut(s) 359
TasI AATT 4 cut(s) 436, 568, 727, 757
TauI GCSGC 4 cut(s) 203, 426, 429, 640
TfiI GAWTC 4 cut(s) 96, 246, 515, 715
Tru1I TTAA 5 cut(s) 137, 165, 486, 567, 856
Tru9I TTAA 5 cut(s) 137, 165, 486, 567, 856
TseFI GTSAC 2 cut(s) 123, 212
TseI GCWGC 2 cut(s) 420, 659
Tsp45I GTSAC 2 cut(s) 123, 212
TspDTI ATGAA 3 cut(s) 96, 262, 804
TspGWI ACGGA 5 cut(s) 18, 171, 483, 570, 854
TspMI CCCGGG 1 cut(s) 350
XapI RAATTY 1 cut(s) 757
XmaI CCCGGG 1 cut(s) 350
XmiI GTMKAC 1 cut(s) 396
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.