Rh7CG075400

VQ motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0017544
Physical Location & Seq
Forward (+)
5366997 .. 5367524
528 bp
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UTR
Exon/CDS
Intron
Rh7CG075400.1

Sequence Viewer

Length: 528 bp
ATGTTAGGGTCCACCGCCACTAGACCGCCGCAGCAGCAGCGCCACCCGGTGATCATCTACACGCATTCCCCTAAAATCATCCACACGCACCCGCGTGACTTCATGGCGCTGGTGCAGAAGCTCACCGGCCTCTCGCGGTTCGAGGATGACACGTCGCCGCCTCCCTCAGCGGTGGCGAAACCCGAACCGCTAGAGACGGGAAATAACAACAACAACAACAACAACGTTGGCATGTCGTCATTGGAGGAGGAGATGATGAATAAGAGCCCTAATCAGGTTAATAGCAACAATGTGATGATAAGAAACGACGACAACGAATCTTCGTCGGTGATTACAGAAGAGAATTGCAGCAGCAATAACAGTAATAATAATCTTAACAACGTAGGAGGAGGAGGGGATTCATCATCGTGCTTTGTGCCGCAGAATCCATATCTAACCAACATTCCGGTGTTCACGCCGAACACGGATTTCTTGTGCACCAATTCCATGAACATATTTAATTACGACTCTATGATCGATCATCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VQ

Protein Analysis

175

Amino Acids

19.34

Weight (kDa)

4.92

Isoelectric Point (pI)

59.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VQ PF05678 21 - 45 1.3e-11 VQ motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017544)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18360
fragaria_vesca FvH4_5g11980
prunus_persica Prupe.5G222000_v2.0.a1
rosa_laevigata RLG00000004902
rosa_multiflora Rmu_sc0010190.1_g000012
rosa_roxburghii Rroxscaffold_3G00268840
rosa_rugosa Rorug06G0470100
rosa_samantha Rh7AG072600 Rh7BG075200 Rh7CG075400 Rh7DG075100
rosa_wichuraiana Rw7G006250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 94, 136
AciI CCGC 9 cut(s) 15, 26, 29, 92, 136, 158, 170, 188, 419
AclI AACGTT 1 cut(s) 225
AdeI CACNNNGTG 1 cut(s) 49
AfiI CCNNNNNNNGG 1 cut(s) 274
AflIII ACRYGT 1 cut(s) 150
AjiI CACGTC 1 cut(s) 153
AleI CACNNNNGTG 1 cut(s) 93
AluBI AGCT 1 cut(s) 121
AluI AGCT 1 cut(s) 121
Alw21I GWGCWC 1 cut(s) 479
Alw26I GTCTC 1 cut(s) 188
Alw44I GTGCAC 1 cut(s) 475
AoxI GGCC 1 cut(s) 127
ApaLI GTGCAC 1 cut(s) 475
ApeKI GCWGC 5 cut(s) 31, 34, 37, 348, 351
AspLEI GCGC 2 cut(s) 42, 109
AspS9I GGNCC 1 cut(s) 9
AsuC2I CCSGG 1 cut(s) 47
AsuHPI GGTGA 3 cut(s) 61, 115, 340
AvaII GGWCC 1 cut(s) 9
BaeGI GKGCMC 1 cut(s) 479
BanII GRGCYC 1 cut(s) 269
Bbv12I GWGCWC 1 cut(s) 479
BbvCI CCTCAGC 1 cut(s) 166
BbvI GCAGC 5 cut(s) 43, 46, 49, 360, 363
BclI TGATCA 1 cut(s) 51
BcnI CCSGG 1 cut(s) 47
BcoDI GTCTC 1 cut(s) 188
BfaI CTAG 2 cut(s) 21, 191
BfoI RGCGCY 2 cut(s) 43, 110
BisI GCNGC 8 cut(s) 29, 32, 35, 38, 158, 349, 352, 419
BlsI GCNGC 8 cut(s) 30, 33, 36, 39, 159, 350, 353, 420
Bme1390I CCNGG 1 cut(s) 47
Bme18I GGWCC 1 cut(s) 9
BmgBI CACGTC 1 cut(s) 153
BmgT120I GGNCC 1 cut(s) 9
BmiI GGNNCC 1 cut(s) 10
BmrFI CCNGG 1 cut(s) 47
Bpu10I CCTNAGC 1 cut(s) 166
BpuMI CCSGG 1 cut(s) 47
Bsa29I ATCGAT 1 cut(s) 516
BsaWI WCCGGW 1 cut(s) 445
Bsc4I CCNNNNNNNGG 1 cut(s) 274
Bse118I RCCGGY 1 cut(s) 125
BseCI ATCGAT 1 cut(s) 516
BseGI GGATG 2 cut(s) 78, 151
BseLI CCNNNNNNNGG 1 cut(s) 274
BseMII CTCAG 1 cut(s) 180
BseRI GAGGAG 4 cut(s) 260, 263, 402, 405
BseSI GKGCMC 1 cut(s) 479
BseXI GCAGC 5 cut(s) 43, 46, 49, 360, 363
BsgI GTGCAG 1 cut(s) 134
Bsh1236I CGCG 2 cut(s) 94, 136
BshFI GGCC 1 cut(s) 129
BshVI ATCGAT 1 cut(s) 516
BsiHKAI GWGCWC 1 cut(s) 479
BsiSI CCGG 3 cut(s) 47, 126, 446
BslI CCNNNNNNNGG 1 cut(s) 274
BsmAI GTCTC 1 cut(s) 188
BsmBI CGTCTC 1 cut(s) 188
BsmI GAATGC 1 cut(s) 64
BsnI GGCC 1 cut(s) 129
Bsp1286I GDGCHC 2 cut(s) 269, 479
Bsp143I GATC 3 cut(s) 51, 513, 517
BspACI CCGC 9 cut(s) 15, 26, 29, 92, 136, 158, 170, 188, 419
BspANI GGCC 1 cut(s) 129
BspCNI CTCAG 1 cut(s) 179
BspDI ATCGAT 1 cut(s) 516
BspFNI CGCG 2 cut(s) 94, 136
BspLI GGNNCC 1 cut(s) 10
BsrFI RCCGGY 1 cut(s) 125
BssAI RCCGGY 1 cut(s) 125
BssMI GATC 3 cut(s) 51, 513, 517
Bst4CI ACNGT 1 cut(s) 362
Bst6I CTCTTC 1 cut(s) 333
BstDEI CTNAG 1 cut(s) 166
BstF5I GGATG 2 cut(s) 78, 151
BstFNI CGCG 2 cut(s) 94, 136
BstH2I RGCGCY 2 cut(s) 43, 110
BstHHI GCGC 2 cut(s) 42, 109
BstKTI GATC 3 cut(s) 54, 516, 520
BstMAI GTCTC 1 cut(s) 188
BstMBI GATC 3 cut(s) 51, 513, 517
BstMWI GCNNNNNNNGC 2 cut(s) 34, 37
BstNSI RCATGY 1 cut(s) 235
BstSCI CCNGG 1 cut(s) 45
BstSLI GKGCMC 1 cut(s) 479
BstUI CGCG 2 cut(s) 94, 136
BstV1I GCAGC 5 cut(s) 43, 46, 49, 360, 363
Bsu15I ATCGAT 1 cut(s) 516
BsuRI GGCC 1 cut(s) 129
BsuTUI ATCGAT 1 cut(s) 516
BtrI CACGTC 1 cut(s) 153
BtsCI GGATG 2 cut(s) 78, 151
CfoI GCGC 2 cut(s) 42, 109
Cfr10I RCCGGY 1 cut(s) 125
Cfr13I GGNCC 1 cut(s) 9
ClaI ATCGAT 1 cut(s) 516
CviAII CATG 3 cut(s) 103, 232, 487
CviJI RGCY 3 cut(s) 121, 129, 267
CviKI_1 RGCY 3 cut(s) 121, 129, 267
DdeI CTNAG 1 cut(s) 166
DpnI GATC 3 cut(s) 53, 515, 519
DpnII GATC 3 cut(s) 51, 513, 517
DraIII CACNNNGTG 1 cut(s) 49
Eam1104I CTCTTC 1 cut(s) 333
EarI CTCTTC 1 cut(s) 333
Eco24I GRGCYC 1 cut(s) 269
Eco47I GGWCC 1 cut(s) 9
EcoT38I GRGCYC 1 cut(s) 269
Esp3I CGTCTC 1 cut(s) 188
FaeI CATG 3 cut(s) 106, 235, 490
FaiI YATR 6 cut(s) 104, 233, 430, 488, 494, 512
FatI CATG 3 cut(s) 102, 231, 486
FauI CCCGC 1 cut(s) 99
FbaI TGATCA 1 cut(s) 51
Fnu4HI GCNGC 8 cut(s) 29, 32, 35, 38, 158, 349, 352, 419
FokI GGATG 2 cut(s) 65, 158
FriOI GRGCYC 1 cut(s) 269
Fsp4HI GCNGC 8 cut(s) 29, 32, 35, 38, 158, 349, 352, 419
FspBI CTAG 2 cut(s) 21, 191
GlaI GCGC 2 cut(s) 41, 108
GluI GCNGC 8 cut(s) 29, 32, 35, 38, 158, 349, 352, 419
HaeII RGCGCY 2 cut(s) 43, 110
HaeIII GGCC 1 cut(s) 129
HapII CCGG 3 cut(s) 47, 126, 446
HhaI GCGC 2 cut(s) 42, 109
Hin1II CATG 3 cut(s) 106, 235, 490
Hin6I GCGC 2 cut(s) 40, 107
HinP1I GCGC 2 cut(s) 40, 107
HinfI GANTC 4 cut(s) 317, 398, 424, 506
HpaII CCGG 3 cut(s) 47, 126, 446
HphI GGTGA 3 cut(s) 61, 115, 340
Hpy166II GTNNAC 3 cut(s) 12, 453, 477
Hpy8I GTNNAC 3 cut(s) 12, 453, 477
Hpy99I CGWCG 3 cut(s) 157, 311, 328
HpyCH4III ACNGT 1 cut(s) 362
HpyCH4IV ACGT 3 cut(s) 152, 225, 381
HpyCH4V TGCA 3 cut(s) 115, 348, 477
HpyF10VI GCNNNNNNNGC 2 cut(s) 34, 37
HpyF3I CTNAG 1 cut(s) 166
HpySE526I ACGT 3 cut(s) 152, 225, 381
Hsp92II CATG 3 cut(s) 106, 235, 490
HspAI GCGC 2 cut(s) 40, 107
Ksp22I TGATCA 1 cut(s) 51
Kzo9I GATC 3 cut(s) 51, 513, 517
LpnPI CCDG 5 cut(s) 60, 95, 139, 260, 459
Lsp1109I GCAGC 5 cut(s) 43, 46, 49, 360, 363
MaeI CTAG 2 cut(s) 21, 191
MaeII ACGT 3 cut(s) 152, 225, 381
MaeIII GTNAC 1 cut(s) 95
MalI GATC 3 cut(s) 53, 515, 519
MboI GATC 3 cut(s) 51, 513, 517
MboII GAAGA 2 cut(s) 312, 350
MhlI GDGCHC 2 cut(s) 269, 479
MluCI AATT 3 cut(s) 343, 481, 499
MlyI GAGTC 1 cut(s) 500
MnlI CCTC 9 cut(s) 136, 140, 171, 175, 238, 241, 380, 383, 386
MseI TTAA 3 cut(s) 279, 375, 498
MslI CAYNNNNRTG 3 cut(s) 93, 406, 446
MspA1I CMGCKG 1 cut(s) 170
MspI CCGG 3 cut(s) 47, 126, 446
MspR9I CCNGG 1 cut(s) 47
Mva1269I GAATGC 1 cut(s) 64
MvnI CGCG 2 cut(s) 94, 136
MwoI GCNNNNNNNGC 2 cut(s) 34, 37
NciI CCSGG 1 cut(s) 47
NdeII GATC 3 cut(s) 51, 513, 517
NlaIII CATG 3 cut(s) 106, 235, 490
NlaIV GGNNCC 1 cut(s) 10
NmuCI GTSAC 1 cut(s) 95
NspI RCATGY 1 cut(s) 235
OliI CACNNNNGTG 1 cut(s) 93
PcsI WCGNNNNNNNCGW 1 cut(s) 312
PctI GAATGC 1 cut(s) 64
PfeI GAWTC 3 cut(s) 317, 398, 424
PkrI GCNGC 8 cut(s) 30, 33, 36, 39, 159, 350, 353, 420
PleI GAGTC 1 cut(s) 500
PpsI GAGTC 1 cut(s) 500
Psp1406I AACGTT 1 cut(s) 225
PspN4I GGNNCC 1 cut(s) 10
PspPI GGNCC 1 cut(s) 9
RseI CAYNNNNRTG 3 cut(s) 93, 406, 446
SaqAI TTAA 3 cut(s) 279, 375, 498
SatI GCNGC 8 cut(s) 29, 32, 35, 38, 158, 349, 352, 419
Sau3AI GATC 3 cut(s) 51, 513, 517
Sau96I GGNCC 1 cut(s) 9
SchI GAGTC 1 cut(s) 500
ScrFI CCNGG 1 cut(s) 47
SduI GDGCHC 2 cut(s) 269, 479
SetI ASST 5 cut(s) 123, 155, 228, 279, 384
SinI GGWCC 1 cut(s) 9
SmiMI CAYNNNNRTG 3 cut(s) 93, 406, 446
Sse9I AATT 3 cut(s) 343, 481, 499
SsiI CCGC 9 cut(s) 15, 26, 29, 92, 136, 158, 170, 188, 419
SspMI CTAG 2 cut(s) 21, 191
StyD4I CCNGG 1 cut(s) 45
TaaI ACNGT 1 cut(s) 362
TaiI ACGT 3 cut(s) 155, 228, 384
TaqI TCGA 2 cut(s) 141, 516
TasI AATT 3 cut(s) 343, 481, 499
TauI GCSGC 3 cut(s) 31, 160, 421
TfiI GAWTC 3 cut(s) 317, 398, 424
Tru1I TTAA 3 cut(s) 279, 375, 498
Tru9I TTAA 3 cut(s) 279, 375, 498
TseFI GTSAC 1 cut(s) 95
TseI GCWGC 5 cut(s) 31, 34, 37, 348, 351
Tsp45I GTSAC 1 cut(s) 95
TspDTI ATGAA 4 cut(s) 91, 272, 390, 503
TspGWI ACGGA 1 cut(s) 479
VneI GTGCAC 1 cut(s) 475
VpaK11BI GGWCC 1 cut(s) 9
XceI RCATGY 1 cut(s) 235
XspI CTAG 2 cut(s) 21, 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.