FvH4_5g11980

VQ motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0017544
Physical Location & Seq
Reverse (-)
6775193 .. 6776461
1269 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g11980.t1

Sequence Viewer

Length: 690 bp
ATGAGCCCTCATGCAAATAAGATCACCAATGACAACACCAATGCCCTATATCCACCGCCGTTGAAGATCAACAAGGACTCCCATTTCATCAAGAAACCCTCCTCCTCCTCCTCCACCTCGTCGCCGCCGTCGTCTTCATCCTCATCGTCCACGTACGCATTGTTAGGATCATCCACCGCCACAAGACCACCGCAACAGCAGCAGCAGCGCCACCCGGTCATCATCTACACGCATTCTCCCAAAATCATTCACACGCACCCGCGTGACTTCATGGCTCTGGTGCAGAAGCTCACCGGCCTCTCGCGGTTTGAGGATGACACGTCGTCGCCTCCCTCGGTGACGGCGAAACCCGAACCGTCAGAGACCGGAAACAACAACCCTAACAATAGCACCAACAACAACGTAGGCATGTCGACGTTGGAGGAGGAGTTGATGATTAAGAGCCCTAATCAGGTTAACAACAGCAATGTGATGACAAGAAACGACGACAATGAATCGTCGTCGGTGATCACCGAAGAGAATTGCAGCAGCAATAACAGTAATAATAATCTCAACAATGTAGGAGGAGGAGGAGGGGATTCTTCGTCGTGCTTTGTGCCACAGAATCCATATCTGACCAACATTCCGGTGTTCACGCCAAACACAGATTTCTTGTGCACCAACTCCATGAACATATTTACGACACTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VQ

Protein Analysis

230

Amino Acids

24.75

Weight (kDa)

5.82

Isoelectric Point (pI)

67.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VQ PF05678 77 - 101 2e-11 VQ motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017544)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18360
fragaria_vesca FvH4_5g11980
prunus_persica Prupe.5G222000_v2.0.a1
rosa_laevigata RLG00000004902
rosa_multiflora Rmu_sc0010190.1_g000012
rosa_roxburghii Rroxscaffold_3G00268840
rosa_rugosa Rorug06G0470100
rosa_samantha Rh7AG072600 Rh7BG075200 Rh7CG075400 Rh7DG075100
rosa_wichuraiana Rw7G006250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 413
AccII CGCG 2 cut(s) 262, 304
AciI CCGC 6 cut(s) 56, 125, 177, 191, 260, 304
AclWI GGATC 1 cut(s) 175
AfaI GTAC 1 cut(s) 155
AfiI CCNNNNNNNGG 1 cut(s) 451
AflIII ACRYGT 1 cut(s) 318
AgsI TTSAA 1 cut(s) 64
AhdI GACNNNNNGTC 1 cut(s) 322
AjiI CACGTC 1 cut(s) 321
AleI CACNNNNGTG 1 cut(s) 261
AluBI AGCT 1 cut(s) 289
AluI AGCT 1 cut(s) 289
Alw21I GWGCWC 1 cut(s) 659
Alw26I GTCTC 1 cut(s) 356
Alw44I GTGCAC 1 cut(s) 655
AlwI GGATC 1 cut(s) 175
AoxI GGCC 1 cut(s) 295
ApaLI GTGCAC 1 cut(s) 655
ApeKI GCWGC 5 cut(s) 199, 202, 205, 525, 528
AspLEI GCGC 1 cut(s) 210
AsuC2I CCSGG 1 cut(s) 215
AsuHPI GGTGA 5 cut(s) 16, 283, 349, 502, 517
BaeGI GKGCMC 1 cut(s) 659
BanII GRGCYC 2 cut(s) 8, 446
BbsI GAAGAC 1 cut(s) 126
Bbv12I GWGCWC 1 cut(s) 659
BbvI GCAGC 5 cut(s) 211, 214, 217, 537, 540
BceAI ACGGC 3 cut(s) 43, 112, 357
BclI TGATCA 1 cut(s) 507
BcnI CCSGG 1 cut(s) 215
BcoDI GTCTC 1 cut(s) 356
BfoI RGCGCY 1 cut(s) 211
BisI GCNGC 6 cut(s) 125, 200, 203, 206, 526, 529
BlsI GCNGC 6 cut(s) 126, 201, 204, 207, 527, 530
Bme1390I CCNGG 1 cut(s) 215
BmeRI GACNNNNNGTC 1 cut(s) 322
BmgBI CACGTC 1 cut(s) 321
BmrFI CCNGG 1 cut(s) 215
BpiI GAAGAC 1 cut(s) 126
BpuMI CCSGG 1 cut(s) 215
BsaAI YACGTR 1 cut(s) 153
BsaI GGTCTC 1 cut(s) 356
BsaJI CCNNGG 1 cut(s) 333
BsaWI WCCGGW 2 cut(s) 365, 625
BsaXI ACNNNNNCTCC 6 cut(s) 62, 92, 220, 250, 413, 443
Bsc4I CCNNNNNNNGG 1 cut(s) 451
Bse118I RCCGGY 1 cut(s) 293
Bse3DI GCAATG 1 cut(s) 472
BseDI CCNNGG 1 cut(s) 333
BseGI GGATG 3 cut(s) 137, 170, 319
BseLI CCNNNNNNNGG 1 cut(s) 451
BseMI GCAATG 1 cut(s) 472
BseRI GAGGAG 9 cut(s) 91, 94, 97, 100, 437, 440, 579, 582, 585
BseSI GKGCMC 1 cut(s) 659
BseXI GCAGC 5 cut(s) 211, 214, 217, 537, 540
BsgI GTGCAG 1 cut(s) 302
Bsh1236I CGCG 2 cut(s) 262, 304
BshFI GGCC 1 cut(s) 297
BsiHKAI GWGCWC 1 cut(s) 659
BsiSI CCGG 4 cut(s) 215, 294, 366, 626
BsiWI CGTACG 1 cut(s) 153
BslI CCNNNNNNNGG 1 cut(s) 451
BsmAI GTCTC 1 cut(s) 356
BsmI GAATGC 1 cut(s) 232
BsnI GGCC 1 cut(s) 297
Bso31I GGTCTC 1 cut(s) 356
Bsp1286I GDGCHC 3 cut(s) 8, 446, 659
Bsp143I GATC 4 cut(s) 21, 66, 167, 507
BspACI CCGC 6 cut(s) 56, 125, 177, 191, 260, 304
BspANI GGCC 1 cut(s) 297
BspFNI CGCG 2 cut(s) 262, 304
BspPI GGATC 1 cut(s) 175
BspTNI GGTCTC 1 cut(s) 356
BsrDI GCAATG 1 cut(s) 472
BsrFI RCCGGY 1 cut(s) 293
BssAI RCCGGY 1 cut(s) 293
BssECI CCNNGG 1 cut(s) 333
BssMI GATC 4 cut(s) 21, 66, 167, 507
Bst4CI ACNGT 2 cut(s) 357, 539
Bst6I CTCTTC 1 cut(s) 510
BstBAI YACGTR 1 cut(s) 153
BstF5I GGATG 3 cut(s) 137, 170, 319
BstFNI CGCG 2 cut(s) 262, 304
BstH2I RGCGCY 1 cut(s) 211
BstHHI GCGC 1 cut(s) 210
BstKTI GATC 4 cut(s) 24, 69, 170, 510
BstMAI GTCTC 1 cut(s) 356
BstMBI GATC 4 cut(s) 21, 66, 167, 507
BstMWI GCNNNNNNNGC 2 cut(s) 199, 205
BstNSI RCATGY 1 cut(s) 412
BstSCI CCNGG 1 cut(s) 213
BstSLI GKGCMC 1 cut(s) 659
BstUI CGCG 2 cut(s) 262, 304
BstV1I GCAGC 5 cut(s) 211, 214, 217, 537, 540
BstV2I GAAGAC 1 cut(s) 126
BsuRI GGCC 1 cut(s) 297
BtrI CACGTC 1 cut(s) 321
BtsCI GGATG 3 cut(s) 137, 170, 319
CfoI GCGC 1 cut(s) 210
Cfr10I RCCGGY 1 cut(s) 293
Csp6I GTAC 1 cut(s) 154
CspCI CAANNNNNGTGG 2 cut(s) 42, 77
CviAII CATG 4 cut(s) 11, 271, 409, 667
CviJI RGCY 5 cut(s) 6, 275, 289, 297, 444
CviKI_1 RGCY 5 cut(s) 6, 275, 289, 297, 444
CviQI GTAC 1 cut(s) 154
DpnI GATC 4 cut(s) 23, 68, 169, 509
DpnII GATC 4 cut(s) 21, 66, 167, 507
DriI GACNNNNNGTC 1 cut(s) 322
Eam1104I CTCTTC 1 cut(s) 510
Eam1105I GACNNNNNGTC 1 cut(s) 322
EarI CTCTTC 1 cut(s) 510
Eco24I GRGCYC 2 cut(s) 8, 446
Eco31I GGTCTC 1 cut(s) 356
EcoT38I GRGCYC 2 cut(s) 8, 446
FaeI CATG 4 cut(s) 14, 274, 412, 670
FaiI YATR 8 cut(s) 12, 49, 272, 410, 610, 668, 674, 688
FatI CATG 4 cut(s) 10, 270, 408, 666
FauI CCCGC 1 cut(s) 267
FbaI TGATCA 1 cut(s) 507
FblI GTMKAC 1 cut(s) 413
Fnu4HI GCNGC 6 cut(s) 125, 200, 203, 206, 526, 529
FokI GGATG 3 cut(s) 124, 157, 326
FriOI GRGCYC 2 cut(s) 8, 446
Fsp4HI GCNGC 6 cut(s) 125, 200, 203, 206, 526, 529
GlaI GCGC 1 cut(s) 209
GluI GCNGC 6 cut(s) 125, 200, 203, 206, 526, 529
HaeII RGCGCY 1 cut(s) 211
HaeIII GGCC 1 cut(s) 297
HapII CCGG 4 cut(s) 215, 294, 366, 626
HhaI GCGC 1 cut(s) 210
Hin1II CATG 4 cut(s) 14, 274, 412, 670
Hin6I GCGC 1 cut(s) 208
HinP1I GCGC 1 cut(s) 208
HincII GTYRAC 2 cut(s) 414, 457
HindII GTYRAC 2 cut(s) 414, 457
HinfI GANTC 4 cut(s) 77, 494, 578, 604
HpaI GTTAAC 1 cut(s) 457
HpaII CCGG 4 cut(s) 215, 294, 366, 626
HphI GGTGA 5 cut(s) 16, 283, 349, 502, 517
Hpy166II GTNNAC 5 cut(s) 150, 414, 457, 633, 657
Hpy188I TCNGA 2 cut(s) 361, 615
Hpy188III TCNNGA 1 cut(s) 91
Hpy8I GTNNAC 5 cut(s) 150, 414, 457, 633, 657
Hpy99I CGWCG 9 cut(s) 124, 133, 325, 328, 418, 488, 502, 505, 589
HpyCH4III ACNGT 2 cut(s) 357, 539
HpyCH4IV ACGT 4 cut(s) 152, 320, 402, 416
HpyCH4V TGCA 4 cut(s) 14, 283, 525, 657
HpyF10VI GCNNNNNNNGC 2 cut(s) 199, 205
HpySE526I ACGT 4 cut(s) 152, 320, 402, 416
Hsp92II CATG 4 cut(s) 14, 274, 412, 670
HspAI GCGC 1 cut(s) 208
Ksp22I TGATCA 1 cut(s) 507
KspAI GTTAAC 1 cut(s) 457
Kzo9I GATC 4 cut(s) 21, 66, 167, 507
LpnPI CCDG 6 cut(s) 228, 263, 307, 379, 437, 639
Lsp1109I GCAGC 5 cut(s) 211, 214, 217, 537, 540
MaeII ACGT 4 cut(s) 152, 320, 402, 416
MaeIII GTNAC 2 cut(s) 263, 337
MalI GATC 4 cut(s) 23, 68, 169, 509
MboI GATC 4 cut(s) 21, 66, 167, 507
MboII GAAGA 4 cut(s) 76, 126, 527, 573
MhlI GDGCHC 3 cut(s) 8, 446, 659
MluCI AATT 1 cut(s) 520
MlyI GAGTC 1 cut(s) 71
MmeI TCCRAC 1 cut(s) 399
MseI TTAA 2 cut(s) 438, 456
MslI CAYNNNNRTG 2 cut(s) 261, 626
MspI CCGG 4 cut(s) 215, 294, 366, 626
MspR9I CCNGG 1 cut(s) 215
Mva1269I GAATGC 1 cut(s) 232
MvnI CGCG 2 cut(s) 262, 304
MwoI GCNNNNNNNGC 2 cut(s) 199, 205
NciI CCSGG 1 cut(s) 215
NdeII GATC 4 cut(s) 21, 66, 167, 507
NlaIII CATG 4 cut(s) 14, 274, 412, 670
NmuCI GTSAC 2 cut(s) 263, 337
NspI RCATGY 1 cut(s) 412
OliI CACNNNNGTG 1 cut(s) 261
PcsI WCGNNNNNNNCGW 3 cut(s) 125, 128, 341
PctI GAATGC 1 cut(s) 232
PfeI GAWTC 3 cut(s) 494, 578, 604
Pfl23II CGTACG 1 cut(s) 153
PkrI GCNGC 6 cut(s) 126, 201, 204, 207, 527, 530
PleI GAGTC 1 cut(s) 71
PpsI GAGTC 1 cut(s) 71
Ppu21I YACGTR 1 cut(s) 153
PspLI CGTACG 1 cut(s) 153
RsaI GTAC 1 cut(s) 155
RsaNI GTAC 1 cut(s) 154
RseI CAYNNNNRTG 2 cut(s) 261, 626
SalI GTCGAC 1 cut(s) 412
SaqAI TTAA 2 cut(s) 438, 456
SatI GCNGC 6 cut(s) 125, 200, 203, 206, 526, 529
Sau3AI GATC 4 cut(s) 21, 66, 167, 507
SchI GAGTC 1 cut(s) 71
ScrFI CCNGG 1 cut(s) 215
SduI GDGCHC 3 cut(s) 8, 446, 659
SetI ASST 7 cut(s) 119, 155, 291, 323, 405, 419, 456
SmiMI CAYNNNNRTG 2 cut(s) 261, 626
Sse9I AATT 1 cut(s) 520
SsiI CCGC 6 cut(s) 56, 125, 177, 191, 260, 304
StyD4I CCNGG 1 cut(s) 213
TaaI ACNGT 2 cut(s) 357, 539
TaiI ACGT 4 cut(s) 155, 323, 405, 419
TaqI TCGA 1 cut(s) 413
TasI AATT 1 cut(s) 520
TauI GCSGC 1 cut(s) 127
TfiI GAWTC 3 cut(s) 494, 578, 604
Tru1I TTAA 2 cut(s) 438, 456
Tru9I TTAA 2 cut(s) 438, 456
TseFI GTSAC 2 cut(s) 263, 337
TseI GCWGC 5 cut(s) 199, 202, 205, 525, 528
Tsp45I GTSAC 2 cut(s) 263, 337
TspDTI ATGAA 5 cut(s) 76, 126, 259, 507, 683
VneI GTGCAC 1 cut(s) 655
XceI RCATGY 1 cut(s) 412
XmiI GTMKAC 1 cut(s) 413
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.