Rh7AG072600

VQ motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0017544
Physical Location & Seq
Reverse (-)
5179309 .. 5179821
513 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG072600.1

Sequence Viewer

Length: 513 bp
ATGTTAGGGTCCACCGCCACTAGACCGCCGCAGCAGCAGCGCCACCCGGTGATCATCTACACGCATTCCCCTAAAATCATCCACACGCACCCGCGTGACTTCATGTCTCTGGTGCAGAAGCTCACCGGCCTCTCGCGGTTCGAGGATGACACGTCGCCGGCGGCGGCGAAACCCGAACCGCTAGAGACGGGAAATAACAACAACAACAACGTTGGCATGTCGTCATTGGAGGAGGAGATGATGCATAAGAGCCCTAATCAGGTTAATAGCAACAATGTGATGATAAGAAACGACGACAACGAATCTTCGTCGGTGATTACCGAAGAGAATTGCAGCAGCAATAACAGTAATAATAATCTTAACAACGTAGGAGGAGGAGGGGATTCATCATCGTGCTTTGTGCCGCCGAATCCATATCTAACCAACATTCCGGTGTTCACGCCGAACACGGATTTCTTGTGCACCAATTCCATGAACATATTTAATTACGACTCTATGATCGATCATCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VQ

Protein Analysis

170

Amino Acids

18.81

Weight (kDa)

5.05

Isoelectric Point (pI)

64.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VQ PF05678 21 - 45 1.9e-11 VQ motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017544)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18360
fragaria_vesca FvH4_5g11980
prunus_persica Prupe.5G222000_v2.0.a1
rosa_laevigata RLG00000004902
rosa_multiflora Rmu_sc0010190.1_g000012
rosa_roxburghii Rroxscaffold_3G00268840
rosa_rugosa Rorug06G0470100
rosa_samantha Rh7AG072600 Rh7BG075200 Rh7CG075400 Rh7DG075100
rosa_wichuraiana Rw7G006250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 94, 136
AciI CCGC 9 cut(s) 15, 26, 29, 92, 136, 161, 164, 179, 404
AclI AACGTT 1 cut(s) 210
AdeI CACNNNGTG 1 cut(s) 49
AfiI CCNNNNNNNGG 1 cut(s) 259
AflIII ACRYGT 1 cut(s) 150
AhdI GACNNNNNGTC 1 cut(s) 103
AjiI CACGTC 1 cut(s) 153
AleI CACNNNNGTG 1 cut(s) 93
AluBI AGCT 1 cut(s) 121
AluI AGCT 1 cut(s) 121
Alw21I GWGCWC 1 cut(s) 464
Alw26I GTCTC 2 cut(s) 111, 179
Alw44I GTGCAC 1 cut(s) 460
AoxI GGCC 1 cut(s) 127
ApaLI GTGCAC 1 cut(s) 460
ApeKI GCWGC 5 cut(s) 31, 34, 37, 333, 336
AspLEI GCGC 1 cut(s) 42
AspS9I GGNCC 1 cut(s) 9
AsuC2I CCSGG 1 cut(s) 47
AsuHPI GGTGA 3 cut(s) 61, 115, 325
AvaII GGWCC 1 cut(s) 9
BaeGI GKGCMC 1 cut(s) 464
BanII GRGCYC 1 cut(s) 254
Bbv12I GWGCWC 1 cut(s) 464
BbvI GCAGC 5 cut(s) 43, 46, 49, 345, 348
BclI TGATCA 1 cut(s) 51
BcnI CCSGG 1 cut(s) 47
BcoDI GTCTC 2 cut(s) 111, 179
BfaI CTAG 2 cut(s) 21, 182
BfoI RGCGCY 1 cut(s) 43
BisI GCNGC 9 cut(s) 29, 32, 35, 38, 162, 165, 334, 337, 404
BlsI GCNGC 9 cut(s) 30, 33, 36, 39, 163, 166, 335, 338, 405
Bme1390I CCNGG 1 cut(s) 47
Bme18I GGWCC 1 cut(s) 9
BmeRI GACNNNNNGTC 1 cut(s) 103
BmgBI CACGTC 1 cut(s) 153
BmgT120I GGNCC 1 cut(s) 9
BmiI GGNNCC 1 cut(s) 10
BmrFI CCNGG 1 cut(s) 47
BmsI GCATC 1 cut(s) 231
BpuMI CCSGG 1 cut(s) 47
Bsa29I ATCGAT 1 cut(s) 501
BsaWI WCCGGW 1 cut(s) 430
Bsc4I CCNNNNNNNGG 1 cut(s) 259
Bse118I RCCGGY 2 cut(s) 125, 157
BseCI ATCGAT 1 cut(s) 501
BseGI GGATG 2 cut(s) 78, 151
BseLI CCNNNNNNNGG 1 cut(s) 259
BseRI GAGGAG 4 cut(s) 245, 248, 387, 390
BseSI GKGCMC 1 cut(s) 464
BseXI GCAGC 5 cut(s) 43, 46, 49, 345, 348
BsgI GTGCAG 1 cut(s) 134
Bsh1236I CGCG 2 cut(s) 94, 136
BshFI GGCC 1 cut(s) 129
BshVI ATCGAT 1 cut(s) 501
BsiHKAI GWGCWC 1 cut(s) 464
BsiSI CCGG 4 cut(s) 47, 126, 158, 431
BslI CCNNNNNNNGG 1 cut(s) 259
BsmAI GTCTC 2 cut(s) 111, 179
BsmBI CGTCTC 1 cut(s) 179
BsmI GAATGC 1 cut(s) 64
BsnI GGCC 1 cut(s) 129
Bsp1286I GDGCHC 2 cut(s) 254, 464
Bsp143I GATC 3 cut(s) 51, 498, 502
BspACI CCGC 9 cut(s) 15, 26, 29, 92, 136, 161, 164, 179, 404
BspANI GGCC 1 cut(s) 129
BspDI ATCGAT 1 cut(s) 501
BspFNI CGCG 2 cut(s) 94, 136
BspLI GGNNCC 1 cut(s) 10
BsrFI RCCGGY 2 cut(s) 125, 157
BssAI RCCGGY 2 cut(s) 125, 157
BssMI GATC 3 cut(s) 51, 498, 502
Bst4CI ACNGT 1 cut(s) 347
Bst6I CTCTTC 1 cut(s) 318
BstC8I GCNNGC 1 cut(s) 159
BstF5I GGATG 2 cut(s) 78, 151
BstFNI CGCG 2 cut(s) 94, 136
BstH2I RGCGCY 1 cut(s) 43
BstHHI GCGC 1 cut(s) 42
BstKTI GATC 3 cut(s) 54, 501, 505
BstMAI GTCTC 2 cut(s) 111, 179
BstMBI GATC 3 cut(s) 51, 498, 502
BstMWI GCNNNNNNNGC 2 cut(s) 34, 37
BstNSI RCATGY 1 cut(s) 220
BstSCI CCNGG 1 cut(s) 45
BstSLI GKGCMC 1 cut(s) 464
BstUI CGCG 2 cut(s) 94, 136
BstV1I GCAGC 5 cut(s) 43, 46, 49, 345, 348
Bsu15I ATCGAT 1 cut(s) 501
BsuRI GGCC 1 cut(s) 129
BsuTUI ATCGAT 1 cut(s) 501
BtrI CACGTC 1 cut(s) 153
BtsCI GGATG 2 cut(s) 78, 151
Cac8I GCNNGC 1 cut(s) 159
CfoI GCGC 1 cut(s) 42
Cfr10I RCCGGY 2 cut(s) 125, 157
Cfr13I GGNCC 1 cut(s) 9
ClaI ATCGAT 1 cut(s) 501
CviAII CATG 3 cut(s) 103, 217, 472
CviJI RGCY 3 cut(s) 121, 129, 252
CviKI_1 RGCY 3 cut(s) 121, 129, 252
DpnI GATC 3 cut(s) 53, 500, 504
DpnII GATC 3 cut(s) 51, 498, 502
DraIII CACNNNGTG 1 cut(s) 49
DriI GACNNNNNGTC 1 cut(s) 103
Eam1104I CTCTTC 1 cut(s) 318
Eam1105I GACNNNNNGTC 1 cut(s) 103
EarI CTCTTC 1 cut(s) 318
Eco24I GRGCYC 1 cut(s) 254
Eco47I GGWCC 1 cut(s) 9
EcoT22I ATGCAT 1 cut(s) 246
EcoT38I GRGCYC 1 cut(s) 254
Esp3I CGTCTC 1 cut(s) 179
FaeI CATG 3 cut(s) 106, 220, 475
FaiI YATR 7 cut(s) 104, 218, 246, 415, 473, 479, 497
FatI CATG 3 cut(s) 102, 216, 471
FauI CCCGC 1 cut(s) 99
FbaI TGATCA 1 cut(s) 51
Fnu4HI GCNGC 9 cut(s) 29, 32, 35, 38, 162, 165, 334, 337, 404
FokI GGATG 2 cut(s) 65, 158
FriOI GRGCYC 1 cut(s) 254
Fsp4HI GCNGC 9 cut(s) 29, 32, 35, 38, 162, 165, 334, 337, 404
FspBI CTAG 2 cut(s) 21, 182
GlaI GCGC 1 cut(s) 41
GluI GCNGC 9 cut(s) 29, 32, 35, 38, 162, 165, 334, 337, 404
HaeII RGCGCY 1 cut(s) 43
HaeIII GGCC 1 cut(s) 129
HapII CCGG 4 cut(s) 47, 126, 158, 431
HhaI GCGC 1 cut(s) 42
Hin1II CATG 3 cut(s) 106, 220, 475
Hin6I GCGC 1 cut(s) 40
HinP1I GCGC 1 cut(s) 40
HinfI GANTC 4 cut(s) 302, 383, 409, 491
HpaII CCGG 4 cut(s) 47, 126, 158, 431
HphI GGTGA 3 cut(s) 61, 115, 325
Hpy166II GTNNAC 3 cut(s) 12, 438, 462
Hpy8I GTNNAC 3 cut(s) 12, 438, 462
Hpy99I CGWCG 3 cut(s) 157, 296, 313
HpyCH4III ACNGT 1 cut(s) 347
HpyCH4IV ACGT 3 cut(s) 152, 210, 366
HpyCH4V TGCA 4 cut(s) 115, 244, 333, 462
HpyF10VI GCNNNNNNNGC 2 cut(s) 34, 37
HpySE526I ACGT 3 cut(s) 152, 210, 366
Hsp92II CATG 3 cut(s) 106, 220, 475
HspAI GCGC 1 cut(s) 40
KroI GCCGGC 1 cut(s) 157
KroNI GCCGGC 1 cut(s) 159
Ksp22I TGATCA 1 cut(s) 51
Kzo9I GATC 3 cut(s) 51, 498, 502
LpnPI CCDG 6 cut(s) 60, 95, 139, 171, 245, 444
Lsp1109I GCAGC 5 cut(s) 43, 46, 49, 345, 348
LweI GCATC 1 cut(s) 231
MaeI CTAG 2 cut(s) 21, 182
MaeII ACGT 3 cut(s) 152, 210, 366
MaeIII GTNAC 1 cut(s) 95
MalI GATC 3 cut(s) 53, 500, 504
MboI GATC 3 cut(s) 51, 498, 502
MboII GAAGA 2 cut(s) 297, 335
MhlI GDGCHC 2 cut(s) 254, 464
MluCI AATT 3 cut(s) 328, 466, 484
MlyI GAGTC 1 cut(s) 485
MnlI CCTC 7 cut(s) 136, 140, 223, 226, 365, 368, 371
Mph1103I ATGCAT 1 cut(s) 246
MreI CGCCGGCG 1 cut(s) 157
MroNI GCCGGC 1 cut(s) 157
MseI TTAA 3 cut(s) 264, 360, 483
MslI CAYNNNNRTG 3 cut(s) 93, 391, 431
MspI CCGG 4 cut(s) 47, 126, 158, 431
MspR9I CCNGG 1 cut(s) 47
Mva1269I GAATGC 1 cut(s) 64
MvnI CGCG 2 cut(s) 94, 136
MwoI GCNNNNNNNGC 2 cut(s) 34, 37
NaeI GCCGGC 1 cut(s) 159
NciI CCSGG 1 cut(s) 47
NdeII GATC 3 cut(s) 51, 498, 502
NgoMIV GCCGGC 1 cut(s) 157
NlaIII CATG 3 cut(s) 106, 220, 475
NlaIV GGNNCC 1 cut(s) 10
NmuCI GTSAC 1 cut(s) 95
NsiI ATGCAT 1 cut(s) 246
NspI RCATGY 1 cut(s) 220
OliI CACNNNNGTG 1 cut(s) 93
PcsI WCGNNNNNNNCGW 1 cut(s) 297
PctI GAATGC 1 cut(s) 64
PdiI GCCGGC 1 cut(s) 159
PfeI GAWTC 3 cut(s) 302, 383, 409
PkrI GCNGC 9 cut(s) 30, 33, 36, 39, 163, 166, 335, 338, 405
PleI GAGTC 1 cut(s) 485
PpsI GAGTC 1 cut(s) 485
Psp1406I AACGTT 1 cut(s) 210
PspN4I GGNNCC 1 cut(s) 10
PspPI GGNCC 1 cut(s) 9
RseI CAYNNNNRTG 3 cut(s) 93, 391, 431
SaqAI TTAA 3 cut(s) 264, 360, 483
SatI GCNGC 9 cut(s) 29, 32, 35, 38, 162, 165, 334, 337, 404
Sau3AI GATC 3 cut(s) 51, 498, 502
Sau96I GGNCC 1 cut(s) 9
SchI GAGTC 1 cut(s) 485
ScrFI CCNGG 1 cut(s) 47
SduI GDGCHC 2 cut(s) 254, 464
SetI ASST 5 cut(s) 123, 155, 213, 264, 369
SfaNI GCATC 1 cut(s) 231
SgrAI CRCCGGYG 1 cut(s) 157
SinI GGWCC 1 cut(s) 9
SmiMI CAYNNNNRTG 3 cut(s) 93, 391, 431
Sse9I AATT 3 cut(s) 328, 466, 484
SsiI CCGC 9 cut(s) 15, 26, 29, 92, 136, 161, 164, 179, 404
SspMI CTAG 2 cut(s) 21, 182
StyD4I CCNGG 1 cut(s) 45
TaaI ACNGT 1 cut(s) 347
TaiI ACGT 3 cut(s) 155, 213, 369
TaqI TCGA 2 cut(s) 141, 501
TasI AATT 3 cut(s) 328, 466, 484
TauI GCSGC 4 cut(s) 31, 164, 167, 406
TfiI GAWTC 3 cut(s) 302, 383, 409
Tru1I TTAA 3 cut(s) 264, 360, 483
Tru9I TTAA 3 cut(s) 264, 360, 483
TseFI GTSAC 1 cut(s) 95
TseI GCWGC 5 cut(s) 31, 34, 37, 333, 336
Tsp45I GTSAC 1 cut(s) 95
TspDTI ATGAA 3 cut(s) 91, 375, 488
TspGWI ACGGA 1 cut(s) 464
VneI GTGCAC 1 cut(s) 460
VpaK11BI GGWCC 1 cut(s) 9
XceI RCATGY 1 cut(s) 220
XspI CTAG 2 cut(s) 21, 182
Zsp2I ATGCAT 1 cut(s) 246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.