Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001439

Physical Location & Seq

Genomic Coordinates Forward (+)

59371390 .. 59374416

Gene Structure 3027 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0470100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGGCTAAACCCAAGACAGTATCATACGAGGAGAGTCGCAAGCAGAGGTTGGAGGAAAACAGGAAGAGAATGGAGGCACTCAATCTGCCTCAGCTTTCTCTCGCTCTTAAAACCTCTTCCTCTCCCAAATCCTCCCCTATGAAGCGAACCCCCAAGCCCAAGGCCGAGAAGCAGATGGTTGTGGTGAGGAGGTCCTCTCGCGTCGCAAATCTACCTTCGCCTCCTGTCTACAAAGAAACGGAAGTTGTTGAGCGAGTTATGATACCGAGAAGGTATTCTGGTTCTACTTCTAAGCATAGGGATCTGTCGAATCGGGTGTATGCTTCTTATGAAGATAGAATGGATGCTATGGCGAAAGCTGAGAAATTGGAGTCGGATTTGGGGTCTGATTACCCGACTCTTGTGAAAACAATGCTCCAATCACATGTCACTGGTGGATTTTGGCTGGGTCTTCAAGTCCAGTTCTGCAAGGATTATCTTTCAAAGAAAGATGAAGTTATGACATTGGTAGACGAAGATGGTAATGAGTACGAGACTATTTACTTGGCCCGGAAGACAGGACTAAGTGGTGGATGGAAAGGATTTGCAGTTGCTCATGATTTGGTGGATGGGGATGCAGTGGTCTTTCAATTAATCAAGCCTACAACAATGAAGGTGTACATTATAAGGGTGGAAAGAAAGGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006508 GO:0006807 GO:0006914 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0010494 GO:0016236 GO:0016579 GO:0019538 GO:0032386 GO:0032879 GO:0032991 GO:0034517 GO:0035770 GO:0035973 GO:0036211 GO:0036464 GO:0043021 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0050789 GO:0050794 GO:0051049 GO:0060341 GO:0060627 GO:0060628 GO:0061912 GO:0061919 GO:0065007 GO:0070646 GO:0070647 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1905538 GO:1990861 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NTF2 RRM_1

Protein Analysis

228

Amino Acids

25.93

Weight (kDa)

9.58

Isoelectric Point (pI)

44.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	135 - 223	5.8e-16	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001439)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07750 AT2G28680
fragaria_vesca	FvH4_2g37390 FvH4_3g34830 FvH4_3g34840
malus_domestica	MD03G1100900.v1.1 MD11G1115000.v1.1
prunus_persica	Prupe.6G085800_v2.0.a1 Prupe.6G085900_v2.0.a1
pyrus_communis	pycom03g08290 pycom11g09650
rosa_chinensis	RchiOBHm_Chr5g0062671 RchiOBHm_Chr5g0062681 RchiOBHm_Chr6g0304301
rosa_laevigata	RLG00000004146 RLG00000004904 RLG00000010993 RLG00000035570 RLG00000035572
rosa_multiflora	Rmu_sc0006470.1_g000001 Rmu_ssc0000218.1_g000036 Rmu_ssc0000472.1_g000022 Rmu_ssc0000472.1_g000023 Rmu_ssc0000472.1_g000028
rosa_roxburghii	Rroxscaffold_1G00017940 Rroxscaffold_1G00017950 Rroxscaffold_3G00260780 Rroxscaffold_7G00163860
rosa_rugosa	Rorug05G0350900 Rorug05G0351000 Rorug06G0329800 Rorug06G0470100 Rorug06G0493800 Rorug07G0020700
rosa_samantha	Rh5AG411700 Rh5AG411900 Rh5BG425700 Rh5BG425900 Rh5CG449800 Rh5CG450000 Rh5DG439700 Rh5DG439800 Rh6AG443200 Rh6BG459200 Rh6CG456000 Rh6DG442700 Rh7BG075100 Rh7BG100100 Rh7BG148700
rosa_wichuraiana	Rw5G038710 Rw5G038720 Rw6G038460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	665
AccI	GTMKAC	2 cut(s)	228, 510
AccII	CGCG	1 cut(s)	201
AclWI	GGATC	1 cut(s)	309
AfaI	GTAC	2 cut(s)	530, 659
AflIII	ACRYGT	1 cut(s)	424
AgsI	TTSAA	3 cut(s)	455, 483, 629
AluBI	AGCT	2 cut(s)	94, 359
AluI	AGCT	2 cut(s)	94, 359
Alw26I	GTCTC	1 cut(s)	527
AlwI	GGATC	1 cut(s)	309
AoxI	GGCC	3 cut(s)	162, 546, 681
AseI	ATTAAT	1 cut(s)	632
Asp700I	GAANNNNTTC	1 cut(s)	274
AspS9I	GGNCC	2 cut(s)	192, 547
AsuC2I	CCSGG	1 cut(s)	550
AsuHPI	GGTGA	1 cut(s)	196
AvaII	GGWCC	1 cut(s)	192
BbsI	GAAGAC	2 cut(s)	443, 560
BbvCI	CCTCAGC	1 cut(s)	90
BccI	CCATC	4 cut(s)	169, 512, 567, 602
BcnI	CCSGG	1 cut(s)	550
BcoDI	GTCTC	1 cut(s)	527
Bme1390I	CCNGG	1 cut(s)	550
Bme18I	GGWCC	1 cut(s)	192
BmgT120I	GGNCC	2 cut(s)	192, 547
BmrFI	CCNGG	1 cut(s)	550
BmsI	GCATC	2 cut(s)	334, 604
BpiI	GAAGAC	2 cut(s)	443, 560
BplI	GAGNNNNNCTC	2 cut(s)	181, 213
Bpu10I	CCTNAGC	1 cut(s)	90
BpuMI	CCSGG	1 cut(s)	550
BsaJI	CCNNGG	1 cut(s)	159
Bse1I	ACTGG	2 cut(s)	436, 460
BseDI	CCNNGG	1 cut(s)	159
BseGI	GGATG	4 cut(s)	349, 578, 613, 619
BseMII	CTCAG	2 cut(s)	104, 351
BseNI	ACTGG	2 cut(s)	436, 460
BseRI	GAGGAG	2 cut(s)	44, 202
BseYI	CCCAGC	1 cut(s)	445
Bsh1236I	CGCG	1 cut(s)	201
BshFI	GGCC	3 cut(s)	164, 548, 683
BsiSI	CCGG	1 cut(s)	550
BsmAI	GTCTC	1 cut(s)	527
BsnI	GGCC	3 cut(s)	164, 548, 683
Bsp1407I	TGTACA	1 cut(s)	657
Bsp143I	GATC	1 cut(s)	301
BspANI	GGCC	3 cut(s)	164, 548, 683
BspCNI	CTCAG	2 cut(s)	103, 352
BspFNI	CGCG	1 cut(s)	201
BspHI	TCATGA	1 cut(s)	595
BspPI	GGATC	1 cut(s)	309
BsrGI	TGTACA	1 cut(s)	657
BsrI	ACTGG	2 cut(s)	436, 460
BssECI	CCNNGG	1 cut(s)	159
BssMI	GATC	1 cut(s)	301
BssT1I	CCWWGG	1 cut(s)	159
Bst4CI	ACNGT	1 cut(s)	19
Bst6I	CTCTTC	2 cut(s)	59, 121
BstAUI	TGTACA	1 cut(s)	657
BstC8I	GCNNGC	1 cut(s)	41
BstDEI	CTNAG	4 cut(s)	90, 291, 360, 563
BstF5I	GGATG	4 cut(s)	349, 578, 613, 619
BstFNI	CGCG	1 cut(s)	201
BstKTI	GATC	1 cut(s)	304
BstMAI	GTCTC	1 cut(s)	527
BstMBI	GATC	1 cut(s)	301
BstNSI	RCATGY	1 cut(s)	428
BstSCI	CCNGG	1 cut(s)	548
BstUI	CGCG	1 cut(s)	201
BstV2I	GAAGAC	2 cut(s)	443, 560
BstX2I	RGATCY	1 cut(s)	301
BstYI	RGATCY	1 cut(s)	301
BsuRI	GGCC	3 cut(s)	164, 548, 683
BtsCI	GGATG	4 cut(s)	349, 578, 613, 619
BtsI	GCAGTG	1 cut(s)	624
BtsIMutI	CAGTG	2 cut(s)	429, 624
Cac8I	GCNNGC	1 cut(s)	41
CciI	TCATGA	1 cut(s)	595
Cfr13I	GGNCC	2 cut(s)	192, 547
CseI	GACGC	1 cut(s)	190
Csp6I	GTAC	2 cut(s)	529, 658
CviAII	CATG	2 cut(s)	425, 596
CviJI	RGCY	9 cut(s)	5, 94, 157, 164, 359, 445, 548, 640, 683
CviKI_1	RGCY	9 cut(s)	5, 94, 157, 164, 359, 445, 548, 640, 683
CviQI	GTAC	2 cut(s)	529, 658
DdeI	CTNAG	4 cut(s)	90, 291, 360, 563
DpnI	GATC	1 cut(s)	303
DpnII	GATC	1 cut(s)	301
Eam1104I	CTCTTC	2 cut(s)	59, 121
EarI	CTCTTC	2 cut(s)	59, 121
Eco130I	CCWWGG	1 cut(s)	159
Eco147I	AGGCCT	1 cut(s)	683
Eco47I	GGWCC	1 cut(s)	192
EcoO109I	RGGNCCY	1 cut(s)	192
EcoT14I	CCWWGG	1 cut(s)	159
ErhI	CCWWGG	1 cut(s)	159
FaeI	CATG	2 cut(s)	428, 599
FatI	CATG	2 cut(s)	424, 595
FblI	GTMKAC	2 cut(s)	228, 510
FokI	GGATG	4 cut(s)	356, 585, 620, 626
GsaI	CCCAGC	1 cut(s)	449
HaeIII	GGCC	3 cut(s)	164, 548, 683
HapII	CCGG	1 cut(s)	550
HgaI	GACGC	1 cut(s)	190
Hin1II	CATG	2 cut(s)	428, 599
HinfI	GANTC	4 cut(s)	34, 310, 371, 397
HpaII	CCGG	1 cut(s)	550
HphI	GGTGA	1 cut(s)	196
Hpy166II	GTNNAC	3 cut(s)	229, 511, 658
Hpy188I	TCNGA	2 cut(s)	376, 388
Hpy188III	TCNNGA	1 cut(s)	596
Hpy8I	GTNNAC	3 cut(s)	229, 511, 658
Hpy99I	CGWCG	1 cut(s)	206
HpyAV	CCTTC	3 cut(s)	225, 264, 646
HpyCH4III	ACNGT	1 cut(s)	19
HpyCH4V	TGCA	3 cut(s)	468, 587, 617
HpyF3I	CTNAG	4 cut(s)	90, 291, 360, 563
Hsp92II	CATG	2 cut(s)	428, 599
Kzo9I	GATC	1 cut(s)	301
LmnI	GCTCC	1 cut(s)	420
LpnPI	CCDG	8 cut(s)	46, 237, 264, 417, 431, 473, 543, 563
LweI	GCATC	2 cut(s)	334, 604
MaeIII	GTNAC	1 cut(s)	427
MalI	GATC	1 cut(s)	303
MboI	GATC	1 cut(s)	301
MboII	GAAGA	6 cut(s)	76, 108, 344, 443, 527, 565
MflI	RGATCY	1 cut(s)	301
MluCI	AATT	2 cut(s)	365, 629
MlyI	GAGTC	3 cut(s)	43, 380, 391
MmeI	TCCRAC	2 cut(s)	30, 354
MroXI	GAANNNNTTC	1 cut(s)	274
MseI	TTAA	2 cut(s)	108, 632
MspI	CCGG	1 cut(s)	550
MspR9I	CCNGG	1 cut(s)	550
MvnI	CGCG	1 cut(s)	201
NciI	CCSGG	1 cut(s)	550
NdeII	GATC	1 cut(s)	301
NlaIII	CATG	2 cut(s)	428, 599
NmeAIII	GCCGAG	1 cut(s)	190
NmuCI	GTSAC	1 cut(s)	427
NspI	RCATGY	1 cut(s)	428
PagI	TCATGA	1 cut(s)	595
PceI	AGGCCT	1 cut(s)	683
PciI	ACATGT	1 cut(s)	424
PdmI	GAANNNNTTC	1 cut(s)	274
PfeI	GAWTC	1 cut(s)	310
PleI	GAGTC	3 cut(s)	42, 379, 391
PpsI	GAGTC	3 cut(s)	42, 379, 391
PpuMI	RGGWCCY	1 cut(s)	192
PscI	ACATGT	1 cut(s)	424
PshBI	ATTAAT	1 cut(s)	632
PsiI	TTATAA	1 cut(s)	665
Psp5II	RGGWCCY	1 cut(s)	192
PspFI	CCCAGC	1 cut(s)	445
PspPI	GGNCC	2 cut(s)	192, 547
PspPPI	RGGWCCY	1 cut(s)	192
PsuI	RGATCY	1 cut(s)	301
RsaI	GTAC	2 cut(s)	530, 659
RsaNI	GTAC	2 cut(s)	529, 658
SaqAI	TTAA	2 cut(s)	108, 632
Sau3AI	GATC	1 cut(s)	301
Sau96I	GGNCC	2 cut(s)	192, 547
SchI	GAGTC	3 cut(s)	43, 380, 391
ScrFI	CCNGG	1 cut(s)	550
SetI	ASST	8 cut(s)	50, 96, 116, 194, 217, 275, 361, 657
SfaNI	GCATC	2 cut(s)	334, 604
SinI	GGWCC	1 cut(s)	192
Sse9I	AATT	2 cut(s)	365, 629
SseBI	AGGCCT	1 cut(s)	683
StuI	AGGCCT	1 cut(s)	683
StyD4I	CCNGG	1 cut(s)	548
StyI	CCWWGG	1 cut(s)	159
TaaI	ACNGT	1 cut(s)	19
TaqI	TCGA	1 cut(s)	308
TasI	AATT	2 cut(s)	365, 629
TatI	WGTACW	1 cut(s)	657
TfiI	GAWTC	1 cut(s)	310
Tru1I	TTAA	2 cut(s)	108, 632
Tru9I	TTAA	2 cut(s)	108, 632
TscAI	CASTG	2 cut(s)	436, 624
TseFI	GTSAC	1 cut(s)	427
Tsp45I	GTSAC	1 cut(s)	427
TspDTI	ATGAA	4 cut(s)	155, 345, 507, 665
TspGWI	ACGGA	1 cut(s)	254
TspRI	CASTG	2 cut(s)	436, 624
VpaK11BI	GGWCC	1 cut(s)	192
VspI	ATTAAT	1 cut(s)	632
XceI	RCATGY	1 cut(s)	428
XmiI	GTMKAC	2 cut(s)	228, 510
XmnI	GAANNNNTTC	1 cut(s)	274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.