RchiOBHm_Chr6g0304301

Glutelin type-A

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0001439
Physical Location & Seq
Reverse (-)
63651386 .. 63652453
1068 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ27340

Sequence Viewer

Length: 1068 bp
ATGGAGATTGATCTTACACCAAGGTTGGCTAAGAAGGTTTATGGAGGAGATGGTGGTTCCTACTCTGCCTGGTCGCCGTCAGAGCTTCCCATGCTCCGTGAAGGTGACATCGGAGCTGCCAAGCTCTCTCTGGAGAAGGACGGCTTTGCTCTCCCCAATTATTCCGACTCTGCCAGAGTTGCTTATGTCCTTCAAGGTAATGGAGTAGTCGGGATTGTTCTGCCGGAGAAGGAAGAAAAGGTTCTTCCAGTGAAGAAAGGTGATGCCATTGCCCTCCCTTTTGGAGTTATCACTTGGTGGTACAACAAGGAGGACACTGAGTTTGTGGTTCTTTTCTTGGGTGATACCAAAACAGCTCACAAAAGGGGTGAGTTCACTGACTTCTATCTCAATGGCTCTAATGGCATTTTCACTGGCTTCTCAACTGAGTTTGTCGGCCGAGCATGGGATTTGGAGGAGAGTGTTGTGAAGACTCTTGTTGGCAAGCAAACCGGCAAGGGCATTGTTAAGTTGGGGGGAGCTAATTTGCCTGAGCCAAACAAGGAACATAGAGATGGGATGACATTGAACTGCGAAGAGGCTCCTCTTGACGTTGATATTGAGGGCGGTGGAAGAGTTGTTGTTTTGAATACTAAGAACCTTCCCTTGGTCGGTGAGGTTGGGCTTGGTGCTGATCTTGTTAGGTTGGATGGAAGTGCTATGTGCTCCCCTGGGTTTTCGTGCGACTCTGCATTGCAGGTGACTTACATTGTTAGGGGAAGTGGCCGTGTCCAAGTTGTTGGTGTCGACGGAAAGAGGGTCTTGGAAACAACCGTTAGAGCTGGCAACTTGTTCATCGTTCCTCGATTCTTTGTCGTTTCAAAGATTGCTGATCCGGAAGGCTTGGAATGGTTCTCCATCATCACCACACCCAATCCAATATTCACTCATCTGGCTGGAAGTATTGGTGCTTGGAAAGCATTGTCTCCTCAGGTGCTTGAGGCTTCTTTCAACGTGGATTCAGATACTGAGAAACTCTTCCGATCAAAGAGAACTTCTGATGCAATCTTCTTCCCTCCTCCGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

355

Amino Acids

38.36

Weight (kDa)

5.26

Isoelectric Point (pI)

29.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 11 - 156 4.8e-23 Cupin
Cupin_1 PF00190 198 - 337 2e-23 Cupin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 727
Acc36I ACCTGC 1 cut(s) 727
AccI GTMKAC 1 cut(s) 786
AccIII TCCGGA 1 cut(s) 874
AciI CCGC 1 cut(s) 606
AclWI GGATC 1 cut(s) 866
AcoI YGGCCR 2 cut(s) 436, 763
AdeI CACNNNGTG 1 cut(s) 297
AfaI GTAC 1 cut(s) 302
AfiI CCNNNNNNNGG 3 cut(s) 445, 646, 650
AgsI TTSAA 5 cut(s) 194, 568, 628, 861, 991
AjnI CCWGG 2 cut(s) 68, 709
AjuI GAANNNNNNNTTGG 4 cut(s) 629, 661, 905, 937
AluBI AGCT 6 cut(s) 85, 116, 124, 356, 521, 821
AluI AGCT 6 cut(s) 85, 116, 124, 356, 521, 821
Alw21I GWGCWC 1 cut(s) 707
Alw26I GTCTC 1 cut(s) 969
AlwI GGATC 1 cut(s) 866
AlwNI CAGNNNCTG 1 cut(s) 1007
Aor13HI TCCGGA 1 cut(s) 874
AoxI GGCC 2 cut(s) 436, 763
ApeKI GCWGC 1 cut(s) 116
ArsI GACNNNNNNTTYG 2 cut(s) 305, 337
Asp700I GAANNNNTTC 2 cut(s) 240, 1016
AsuHPI GGTGA 7 cut(s) 116, 272, 353, 380, 665, 751, 895
AxyI CCTNAGG 1 cut(s) 969
BbsI GAAGAC 1 cut(s) 476
Bbv12I GWGCWC 1 cut(s) 707
BbvI GCAGC 1 cut(s) 103
BccI CCATC 4 cut(s) 44, 548, 683, 905
BceAI ACGGC 3 cut(s) 61, 157, 750
BciT130I CCWGG 2 cut(s) 70, 711
BcoDI GTCTC 1 cut(s) 969
BfuAI ACCTGC 1 cut(s) 727
BisI GCNGC 1 cut(s) 117
BlsI GCNGC 1 cut(s) 118
Bme1390I CCNGG 2 cut(s) 70, 711
BmiI GGNNCC 2 cut(s) 58, 582
BmrFI CCNGG 2 cut(s) 70, 711
BmsI GCATC 2 cut(s) 253, 1030
BpiI GAAGAC 1 cut(s) 476
BpmI CTGGAG 1 cut(s) 152
Bpu10I CCTNAGC 1 cut(s) 531
BpuEI CTTGAG 1 cut(s) 998
BsaJI CCNNGG 4 cut(s) 20, 645, 709, 710
BsaWI WCCGGW 1 cut(s) 874
Bsc4I CCNNNNNNNGG 3 cut(s) 445, 646, 650
Bse118I RCCGGY 1 cut(s) 491
Bse1I ACTGG 2 cut(s) 248, 418
Bse21I CCTNAGG 1 cut(s) 969
Bse3DI GCAATG 2 cut(s) 267, 731
BseAI TCCGGA 1 cut(s) 874
BseBI CCWGG 2 cut(s) 70, 711
BseDI CCNNGG 4 cut(s) 20, 645, 709, 710
BseGI GGATG 2 cut(s) 564, 694
BseLI CCNNNNNNNGG 3 cut(s) 445, 646, 650
BseMI GCAATG 2 cut(s) 267, 731
BseMII CTCAG 5 cut(s) 309, 417, 522, 983, 999
BseNI ACTGG 2 cut(s) 248, 418
BseRI GAGGAG 5 cut(s) 60, 470, 573, 957, 1047
BseX3I CGGCCG 1 cut(s) 436
BseXI GCAGC 1 cut(s) 103
Bsh1285I CGRYCG 1 cut(s) 439
BshFI GGCC 2 cut(s) 438, 765
BsiEI CGRYCG 1 cut(s) 439
BsiHKAI GWGCWC 1 cut(s) 707
BsiSI CCGG 3 cut(s) 224, 492, 875
BslI CCNNNNNNNGG 3 cut(s) 445, 646, 650
BsmAI GTCTC 1 cut(s) 969
BsnI GGCC 2 cut(s) 438, 765
Bsp1286I GDGCHC 1 cut(s) 707
Bsp13I TCCGGA 1 cut(s) 874
Bsp143I GATC 4 cut(s) 10, 673, 871, 1022
BspACI CCGC 1 cut(s) 606
BspANI GGCC 2 cut(s) 438, 765
BspCNI CTCAG 5 cut(s) 310, 418, 523, 982, 1000
BspEI TCCGGA 1 cut(s) 874
BspLI GGNNCC 2 cut(s) 58, 582
BspMI ACCTGC 1 cut(s) 727
BspPI GGATC 1 cut(s) 866
BsrDI GCAATG 2 cut(s) 267, 731
BsrFI RCCGGY 1 cut(s) 491
BsrI ACTGG 2 cut(s) 248, 418
BssAI RCCGGY 1 cut(s) 491
BssECI CCNNGG 4 cut(s) 20, 645, 709, 710
BssMI GATC 4 cut(s) 10, 673, 871, 1022
BssT1I CCWWGG 2 cut(s) 20, 645
Bst2UI CCWGG 2 cut(s) 70, 711
Bst4CI ACNGT 1 cut(s) 814
Bst6I CTCTTC 3 cut(s) 570, 607, 1022
BstC8I GCNNGC 2 cut(s) 485, 823
BstDEI CTNAG 7 cut(s) 30, 318, 426, 531, 633, 969, 1008
BstF5I GGATG 2 cut(s) 564, 694
BstKTI GATC 4 cut(s) 13, 676, 874, 1025
BstMAI GTCTC 1 cut(s) 969
BstMBI GATC 4 cut(s) 10, 673, 871, 1022
BstMCI CGRYCG 1 cut(s) 439
BstMWI GCNNNNNNNGC 5 cut(s) 82, 91, 179, 402, 956
BstNI CCWGG 2 cut(s) 70, 711
BstSCI CCNGG 2 cut(s) 68, 709
BstV1I GCAGC 1 cut(s) 103
BstV2I GAAGAC 1 cut(s) 476
BstXI CCANNNNNNTGG 1 cut(s) 779
BstZI CGGCCG 1 cut(s) 436
Bsu36I CCTNAGG 1 cut(s) 969
BsuRI GGCC 2 cut(s) 438, 765
BtsCI GGATG 2 cut(s) 564, 694
BtsIMutI CAGTG 4 cut(s) 255, 315, 375, 411
BveI ACCTGC 1 cut(s) 727
Cac8I GCNNGC 2 cut(s) 485, 823
CaiI CAGNNNCTG 1 cut(s) 1007
Cfr10I RCCGGY 1 cut(s) 491
Csp6I GTAC 1 cut(s) 301
CviAII CATG 2 cut(s) 91, 444
CviQI GTAC 1 cut(s) 301
DdeI CTNAG 7 cut(s) 30, 318, 426, 531, 633, 969, 1008
DpnI GATC 4 cut(s) 12, 675, 873, 1024
DpnII GATC 4 cut(s) 10, 673, 871, 1022
DraIII CACNNNGTG 1 cut(s) 297
EaeI YGGCCR 2 cut(s) 436, 763
EagI CGGCCG 1 cut(s) 436
Eam1104I CTCTTC 3 cut(s) 570, 607, 1022
EarI CTCTTC 3 cut(s) 570, 607, 1022
EclXI CGGCCG 1 cut(s) 436
Eco130I CCWWGG 2 cut(s) 20, 645
Eco52I CGGCCG 1 cut(s) 436
Eco81I CCTNAGG 1 cut(s) 969
EcoRII CCWGG 2 cut(s) 68, 709
EcoT14I CCWWGG 2 cut(s) 20, 645
ErhI CCWWGG 2 cut(s) 20, 645
FaeI CATG 2 cut(s) 94, 447
FaiI YATR 6 cut(s) 42, 92, 186, 445, 549, 701
FalI AAGNNNNNCTT 4 cut(s) 128, 160, 785, 817
FatI CATG 2 cut(s) 90, 443
FblI GTMKAC 1 cut(s) 786
Fnu4HI GCNGC 1 cut(s) 117
FokI GGATG 2 cut(s) 571, 701
Fsp4HI GCNGC 1 cut(s) 117
GluI GCNGC 1 cut(s) 117
GsuI CTGGAG 1 cut(s) 152
HaeIII GGCC 2 cut(s) 438, 765
HapII CCGG 3 cut(s) 224, 492, 875
Hin1II CATG 2 cut(s) 94, 447
HincII GTYRAC 1 cut(s) 787
HindII GTYRAC 1 cut(s) 787
HinfI GANTC 5 cut(s) 167, 472, 725, 846, 998
HpaII CCGG 3 cut(s) 224, 492, 875
HphI GGTGA 7 cut(s) 116, 272, 353, 380, 665, 751, 895
Hpy166II GTNNAC 2 cut(s) 375, 787
Hpy188I TCNGA 7 cut(s) 82, 113, 166, 1003, 1022, 1039, 1062
Hpy188III TCNNGA 4 cut(s) 131, 211, 587, 875
Hpy8I GTNNAC 2 cut(s) 375, 787
Hpy99I CGWCG 1 cut(s) 791
HpyAV CCTTC 7 cut(s) 28, 95, 130, 200, 223, 650, 872
HpyCH4III ACNGT 1 cut(s) 814
HpyCH4IV ACGT 2 cut(s) 591, 993
HpyCH4V TGCA 3 cut(s) 731, 736, 1043
HpyF10VI GCNNNNNNNGC 5 cut(s) 82, 91, 179, 402, 956
HpyF3I CTNAG 7 cut(s) 30, 318, 426, 531, 633, 969, 1008
HpySE526I ACGT 2 cut(s) 591, 993
Hsp92II CATG 2 cut(s) 94, 447
Kpn2I TCCGGA 1 cut(s) 874
Kzo9I GATC 4 cut(s) 10, 673, 871, 1022
LmnI GCTCC 5 cut(s) 99, 113, 518, 586, 710
Lsp1109I GCAGC 1 cut(s) 103
LweI GCATC 2 cut(s) 253, 1030
MaeII ACGT 2 cut(s) 591, 993
MaeIII GTNAC 2 cut(s) 104, 739
MalI GATC 4 cut(s) 12, 675, 873, 1024
MboI GATC 4 cut(s) 10, 673, 871, 1022
MboII GAAGA 9 cut(s) 236, 245, 265, 481, 587, 624, 1009, 1039, 1042
MhlI GDGCHC 1 cut(s) 707
MluCI AATT 2 cut(s) 157, 523
MlyI GAGTC 3 cut(s) 161, 466, 719
MmeI TCCRAC 2 cut(s) 189, 666
MroI TCCGGA 1 cut(s) 874
MroXI GAANNNNTTC 2 cut(s) 240, 1016
MseI TTAA 1 cut(s) 507
MslI CAYNNNNRTG 1 cut(s) 552
MspI CCGG 3 cut(s) 224, 492, 875
MspR9I CCNGG 2 cut(s) 70, 711
MvaI CCWGG 2 cut(s) 70, 711
MwoI GCNNNNNNNGC 5 cut(s) 82, 91, 179, 402, 956
NdeII GATC 4 cut(s) 10, 673, 871, 1022
NlaIII CATG 2 cut(s) 94, 447
NlaIV GGNNCC 2 cut(s) 58, 582
NmeAIII GCCGAG 1 cut(s) 464
NmuCI GTSAC 2 cut(s) 104, 739
PaqCI CACCTGC 1 cut(s) 727
PasI CCCWGGG 1 cut(s) 710
PdmI GAANNNNTTC 2 cut(s) 240, 1016
PfeI GAWTC 2 cut(s) 846, 998
PkrI GCNGC 1 cut(s) 118
PleI GAGTC 3 cut(s) 161, 466, 719
PpsI GAGTC 3 cut(s) 161, 466, 719
Psp6I CCWGG 2 cut(s) 68, 709
PspGI CCWGG 2 cut(s) 68, 709
PspN4I GGNNCC 2 cut(s) 58, 582
PstNI CAGNNNCTG 1 cut(s) 1007
RsaI GTAC 1 cut(s) 302
RsaNI GTAC 1 cut(s) 301
RseI CAYNNNNRTG 1 cut(s) 552
SalI GTCGAC 1 cut(s) 785
SaqAI TTAA 1 cut(s) 507
SatI GCNGC 1 cut(s) 117
Sau3AI GATC 4 cut(s) 10, 673, 871, 1022
SchI GAGTC 3 cut(s) 161, 466, 719
ScrFI CCNGG 2 cut(s) 70, 711
SduI GDGCHC 1 cut(s) 707
SfaNI GCATC 2 cut(s) 253, 1030
SmiMI CAYNNNNRTG 1 cut(s) 552
SmlI CTYRAG 1 cut(s) 977
SmoI CTYRAG 1 cut(s) 977
Sse9I AATT 2 cut(s) 157, 523
SsiI CCGC 1 cut(s) 606
SspI AATATT 1 cut(s) 921
StyD4I CCNGG 2 cut(s) 68, 709
StyI CCWWGG 2 cut(s) 20, 645
TaaI ACNGT 1 cut(s) 814
TaiI ACGT 2 cut(s) 594, 996
TaqI TCGA 2 cut(s) 786, 844
TasI AATT 2 cut(s) 157, 523
TfiI GAWTC 2 cut(s) 846, 998
Tru1I TTAA 1 cut(s) 507
Tru9I TTAA 1 cut(s) 507
TscAI CASTG 4 cut(s) 255, 322, 382, 418
TseFI GTSAC 2 cut(s) 104, 739
TseI GCWGC 1 cut(s) 116
Tsp45I GTSAC 2 cut(s) 104, 739
TspDTI ATGAA 1 cut(s) 823
TspGWI ACGGA 2 cut(s) 86, 804
TspRI CASTG 4 cut(s) 255, 322, 382, 418
XcmI CCANNNNNNNNNTGG 1 cut(s) 127
XmiI GTMKAC 1 cut(s) 786
XmnI GAANNNNTTC 2 cut(s) 240, 1016
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.