FvH4_3g34840

Glutelin type-A

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0001439
Physical Location & Seq
Forward (+)
30118743 .. 30121000
2258 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g34840.t1

Sequence Viewer

Length: 1068 bp
ATGGAGATTGATCTTACACCAAGGTTGGCTAACAAGGTTCACGGAGGAGATGGTGGTTCTTACTCTGCCTGGTCCCCGTCAGAGCTTCCCATGCTCCGGGAAGGTGACATCGGAGCTGCCAAGCTCTCTCTGGAGAAGGACGGCTTTGCTCTCCCCAGTTACTCTGATTCTGCCAGAGTTGCTTATGTCCTTCAAGGTACTGGAGTTGTGGGAATTGTTCTACCAGAGAAGGAAGAAAAAGTTCTTCCAGTGAAGAAGGGTGATGCTATTGCTCTGCCTTTTGGAGTTATTACCTGGTGGCACAACAAGGAGGAGGCTGAGTTTGTGGTTCTGTTCTTGGGAGACACCAAAACAGCTCACAAACGGGGGGAGTTCACCGACTTTTATCTCAATGGTTCCAATGGCATCTTCACTGGCTTCTCAACTGAGTTTGTCGGCCGAGCATGGGATTTGGAGGAGAATGTTGTGAAGACTCTCGTTGGCAAGCAATCCGGCAAGGGAATTGTCAAGTTAGGGGGAGCTAATATGCCCGAGCCAAAGAAGGAACATAGAGATGGGATGACCCTGAACTGCGAGGAGGCTCCTCTAGATGTTGATATCAAGGGTGGTGGAAGAGTTGTCGTCTTGAACACTAAGAACCTTCCCTTGGTTGGTGAGGTTGGGCTTGGAGCTGATCTCGTTAGGCTTGATGGAAGTGCTATGTGCTCCCCTGGATTTTCTTGTGACTCTGCATTGCAGGTGACTTACATTGTTAGGGGCAGTGGCCGTGTGCAAGTTGTCGGCGTTGATGGGAAGAGGGTCTTGGAAACAACTGTTAGAGCAGGCAACTTGTTCATCGTTCCTCGCTTCTTTGTTGTTTCAAAGATTGCTGATCCAGAAGGCTTGGAATGGTTCTCCATCATCACCACTCCCAACCCAATATTCACTCATTTGGCTGGAAGTATTGGAGCTTGGAAAGCATTGTCTCCTCAGGTGCTTGAGGCTTCCTTCAACGTGGATTCAGATACTGAGAAGCTCTTTCGGTCAAAGAGAACCTCTGATGCAATCTTCTTCCCTCCTCCAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

356

Amino Acids

38.28

Weight (kDa)

5.69

Isoelectric Point (pI)

32.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 17 - 157 4.2e-22 Cupin
Cupin_1 PF00190 198 - 337 1.6e-23 Cupin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 727
Acc36I ACCTGC 1 cut(s) 727
AclWI GGATC 1 cut(s) 866
AcoI YGGCCR 2 cut(s) 436, 763
AfaI GTAC 1 cut(s) 199
AfiI CCNNNNNNNGG 4 cut(s) 96, 445, 646, 650
AgsI TTSAA 4 cut(s) 194, 628, 861, 991
AjnI CCWGG 3 cut(s) 68, 293, 709
AjuI GAANNNNNNNTTGG 8 cut(s) 392, 424, 629, 661, 785, 817, 905, 937
AluBI AGCT 8 cut(s) 85, 116, 124, 356, 521, 671, 950, 1015
AluI AGCT 8 cut(s) 85, 116, 124, 356, 521, 671, 950, 1015
Alw21I GWGCWC 1 cut(s) 707
Alw26I GTCTC 2 cut(s) 336, 969
AlwI GGATC 1 cut(s) 866
AlwNI CAGNNNCTG 1 cut(s) 1007
Ama87I CYCGRG 1 cut(s) 530
AoxI GGCC 2 cut(s) 436, 763
ApeKI GCWGC 1 cut(s) 116
Asp700I GAANNNNTTC 1 cut(s) 240
AspS9I GGNCC 1 cut(s) 72
AsuC2I CCSGG 1 cut(s) 98
AsuHPI GGTGA 6 cut(s) 116, 272, 367, 665, 751, 895
AvaI CYCGRG 1 cut(s) 530
AvaII GGWCC 1 cut(s) 72
AxyI CCTNAGG 1 cut(s) 969
BaeI ACNNNNGTAYC 2 cut(s) 189, 222
BbsI GAAGAC 1 cut(s) 476
Bbv12I GWGCWC 1 cut(s) 707
BbvI GCAGC 1 cut(s) 103
BccI CCATC 5 cut(s) 44, 548, 683, 782, 905
BceAI ACGGC 2 cut(s) 157, 750
BciT130I CCWGG 3 cut(s) 70, 295, 711
BcnI CCSGG 1 cut(s) 98
BcoDI GTCTC 2 cut(s) 336, 969
BfaI CTAG 1 cut(s) 587
BfuAI ACCTGC 1 cut(s) 727
BisI GCNGC 1 cut(s) 117
BlsI GCNGC 1 cut(s) 118
Bme1390I CCNGG 4 cut(s) 70, 98, 295, 711
Bme18I GGWCC 1 cut(s) 72
BmeT110I CYCGRG 1 cut(s) 530
BmgT120I GGNCC 1 cut(s) 72
BmiI GGNNCC 3 cut(s) 74, 397, 582
BmrFI CCNGG 4 cut(s) 70, 98, 295, 711
BmrI ACTGGG 1 cut(s) 150
BmsI GCATC 3 cut(s) 253, 414, 1030
BmuI ACTGGG 1 cut(s) 150
BpiI GAAGAC 1 cut(s) 476
BplI GAGNNNNNCTC 2 cut(s) 660, 692
BpmI CTGGAG 2 cut(s) 152, 222
BpuEI CTTGAG 1 cut(s) 998
BpuMI CCSGG 1 cut(s) 98
BsaJI CCNNGG 3 cut(s) 20, 645, 709
BsaXI ACNNNNNCTCC 2 cut(s) 305, 335
Bsc4I CCNNNNNNNGG 4 cut(s) 96, 445, 646, 650
Bse1I ACTGG 4 cut(s) 156, 205, 248, 418
Bse21I CCTNAGG 1 cut(s) 969
Bse3DI GCAATG 1 cut(s) 731
BseBI CCWGG 3 cut(s) 70, 295, 711
BseDI CCNNGG 3 cut(s) 20, 645, 709
BseGI GGATG 1 cut(s) 564
BseLI CCNNNNNNNGG 4 cut(s) 96, 445, 646, 650
BseMI GCAATG 1 cut(s) 731
BseMII CTCAG 4 cut(s) 309, 417, 983, 999
BseNI ACTGG 4 cut(s) 156, 205, 248, 418
BseRI GAGGAG 7 cut(s) 60, 326, 470, 573, 590, 957, 1047
BseX3I CGGCCG 1 cut(s) 436
BseXI GCAGC 1 cut(s) 103
Bsh1285I CGRYCG 1 cut(s) 439
BshFI GGCC 2 cut(s) 438, 765
BsiEI CGRYCG 1 cut(s) 439
BsiHKAI GWGCWC 1 cut(s) 707
BsiHKCI CYCGRG 1 cut(s) 530
BsiSI CCGG 2 cut(s) 97, 492
BslFI GGGAC 1 cut(s) 58
BslI CCNNNNNNNGG 4 cut(s) 96, 445, 646, 650
BsmAI GTCTC 2 cut(s) 336, 969
BsmFI GGGAC 1 cut(s) 58
BsnI GGCC 2 cut(s) 438, 765
BsoBI CYCGRG 1 cut(s) 530
Bsp1286I GDGCHC 1 cut(s) 707
Bsp143I GATC 3 cut(s) 10, 673, 871
BspANI GGCC 2 cut(s) 438, 765
BspCNI CTCAG 4 cut(s) 310, 418, 982, 1000
BspLI GGNNCC 3 cut(s) 74, 397, 582
BspMI ACCTGC 1 cut(s) 727
BspPI GGATC 1 cut(s) 866
BsrDI GCAATG 1 cut(s) 731
BsrI ACTGG 4 cut(s) 156, 205, 248, 418
BssECI CCNNGG 3 cut(s) 20, 645, 709
BssMI GATC 3 cut(s) 10, 673, 871
BssT1I CCWWGG 2 cut(s) 20, 645
Bst2UI CCWGG 3 cut(s) 70, 295, 711
Bst4CI ACNGT 1 cut(s) 814
Bst6I CTCTTC 2 cut(s) 607, 788
BstC8I GCNNGC 2 cut(s) 485, 823
BstDEI CTNAG 5 cut(s) 318, 426, 633, 969, 1008
BstF5I GGATG 1 cut(s) 564
BstKTI GATC 3 cut(s) 13, 676, 874
BstMAI GTCTC 2 cut(s) 336, 969
BstMBI GATC 3 cut(s) 10, 673, 871
BstMCI CGRYCG 1 cut(s) 439
BstMWI GCNNNNNNNGC 3 cut(s) 91, 179, 956
BstNI CCWGG 3 cut(s) 70, 295, 711
BstSCI CCNGG 4 cut(s) 68, 96, 293, 709
BstV1I GCAGC 1 cut(s) 103
BstV2I GAAGAC 1 cut(s) 476
BstZI CGGCCG 1 cut(s) 436
Bsu36I CCTNAGG 1 cut(s) 969
BsuRI GGCC 2 cut(s) 438, 765
BtsCI GGATG 1 cut(s) 564
BtsI GCAGTG 1 cut(s) 766
BtsIMutI CAGTG 3 cut(s) 255, 411, 766
BveI ACCTGC 1 cut(s) 727
Cac8I GCNNGC 2 cut(s) 485, 823
CaiI CAGNNNCTG 1 cut(s) 1007
Cfr13I GGNCC 1 cut(s) 72
CsiI ACCWGGT 1 cut(s) 293
Csp6I GTAC 1 cut(s) 198
CspCI CAANNNNNGTGG 2 cut(s) 589, 624
CviAII CATG 2 cut(s) 91, 444
CviQI GTAC 1 cut(s) 198
DdeI CTNAG 5 cut(s) 318, 426, 633, 969, 1008
DpnI GATC 3 cut(s) 12, 675, 873
DpnII GATC 3 cut(s) 10, 673, 871
EaeI YGGCCR 2 cut(s) 436, 763
EagI CGGCCG 1 cut(s) 436
Eam1104I CTCTTC 2 cut(s) 607, 788
EarI CTCTTC 2 cut(s) 607, 788
EclXI CGGCCG 1 cut(s) 436
Eco130I CCWWGG 2 cut(s) 20, 645
Eco32I GATATC 1 cut(s) 598
Eco47I GGWCC 1 cut(s) 72
Eco52I CGGCCG 1 cut(s) 436
Eco81I CCTNAGG 1 cut(s) 969
Eco88I CYCGRG 1 cut(s) 530
EcoRII CCWGG 3 cut(s) 68, 293, 709
EcoRV GATATC 1 cut(s) 598
EcoT14I CCWWGG 2 cut(s) 20, 645
ErhI CCWWGG 2 cut(s) 20, 645
FaeI CATG 2 cut(s) 94, 447
FaiI YATR 6 cut(s) 92, 186, 445, 527, 549, 701
FalI AAGNNNNNCTT 4 cut(s) 128, 160, 785, 817
FaqI GGGAC 1 cut(s) 58
FatI CATG 2 cut(s) 90, 443
Fnu4HI GCNGC 1 cut(s) 117
FokI GGATG 1 cut(s) 571
Fsp4HI GCNGC 1 cut(s) 117
FspBI CTAG 1 cut(s) 587
GluI GCNGC 1 cut(s) 117
GsuI CTGGAG 2 cut(s) 152, 222
HaeIII GGCC 2 cut(s) 438, 765
HapII CCGG 2 cut(s) 97, 492
Hin1II CATG 2 cut(s) 94, 447
HinfI GANTC 4 cut(s) 167, 472, 725, 998
HpaII CCGG 2 cut(s) 97, 492
HphI GGTGA 6 cut(s) 116, 272, 367, 665, 751, 895
Hpy166II GTNNAC 2 cut(s) 40, 375
Hpy188I TCNGA 5 cut(s) 82, 113, 166, 1003, 1039
Hpy188III TCNNGA 4 cut(s) 131, 587, 625, 875
Hpy8I GTNNAC 2 cut(s) 40, 375
HpyAV CCTTC 9 cut(s) 95, 130, 200, 223, 250, 535, 650, 872, 997
HpyCH4III ACNGT 1 cut(s) 814
HpyCH4IV ACGT 1 cut(s) 993
HpyCH4V TGCA 4 cut(s) 731, 736, 772, 1043
HpyF10VI GCNNNNNNNGC 3 cut(s) 91, 179, 956
HpyF3I CTNAG 5 cut(s) 318, 426, 633, 969, 1008
HpySE526I ACGT 1 cut(s) 993
Hsp92II CATG 2 cut(s) 94, 447
Kzo9I GATC 3 cut(s) 10, 673, 871
LmnI GCTCC 7 cut(s) 99, 113, 518, 586, 668, 710, 947
Lsp1109I GCAGC 1 cut(s) 103
LweI GCATC 3 cut(s) 253, 414, 1030
MabI ACCWGGT 1 cut(s) 293
MaeI CTAG 1 cut(s) 587
MaeII ACGT 1 cut(s) 993
MaeIII GTNAC 4 cut(s) 104, 158, 722, 739
MalI GATC 3 cut(s) 12, 675, 873
MboI GATC 3 cut(s) 10, 673, 871
MboII GAAGA 9 cut(s) 236, 245, 265, 400, 481, 624, 805, 1039, 1042
MhlI GDGCHC 1 cut(s) 707
MluCI AATT 2 cut(s) 213, 501
MlyI GAGTC 2 cut(s) 466, 719
MroXI GAANNNNTTC 1 cut(s) 240
MslI CAYNNNNRTG 1 cut(s) 552
MspI CCGG 2 cut(s) 97, 492
MspR9I CCNGG 4 cut(s) 70, 98, 295, 711
MvaI CCWGG 3 cut(s) 70, 295, 711
MwoI GCNNNNNNNGC 3 cut(s) 91, 179, 956
NciI CCSGG 1 cut(s) 98
NdeII GATC 3 cut(s) 10, 673, 871
NlaIII CATG 2 cut(s) 94, 447
NlaIV GGNNCC 3 cut(s) 74, 397, 582
NmeAIII GCCGAG 1 cut(s) 464
NmuCI GTSAC 3 cut(s) 104, 722, 739
PaqCI CACCTGC 1 cut(s) 727
PdmI GAANNNNTTC 1 cut(s) 240
PfeI GAWTC 2 cut(s) 167, 998
PfoI TCCNGGA 1 cut(s) 96
PkrI GCNGC 1 cut(s) 118
PleI GAGTC 2 cut(s) 466, 719
PpsI GAGTC 2 cut(s) 466, 719
Psp6I CCWGG 3 cut(s) 68, 293, 709
PspGI CCWGG 3 cut(s) 68, 293, 709
PspN4I GGNNCC 3 cut(s) 74, 397, 582
PspPI GGNCC 1 cut(s) 72
PstNI CAGNNNCTG 1 cut(s) 1007
RsaI GTAC 1 cut(s) 199
RsaNI GTAC 1 cut(s) 198
RseI CAYNNNNRTG 1 cut(s) 552
SatI GCNGC 1 cut(s) 117
Sau3AI GATC 3 cut(s) 10, 673, 871
Sau96I GGNCC 1 cut(s) 72
SchI GAGTC 2 cut(s) 466, 719
ScrFI CCNGG 4 cut(s) 70, 98, 295, 711
SduI GDGCHC 1 cut(s) 707
SexAI ACCWGGT 1 cut(s) 293
SfaNI GCATC 3 cut(s) 253, 414, 1030
SinI GGWCC 1 cut(s) 72
SmiMI CAYNNNNRTG 1 cut(s) 552
SmlI CTYRAG 1 cut(s) 977
SmoI CTYRAG 1 cut(s) 977
Sse9I AATT 2 cut(s) 213, 501
SspI AATATT 1 cut(s) 921
SspMI CTAG 1 cut(s) 587
StyD4I CCNGG 4 cut(s) 68, 96, 293, 709
StyI CCWWGG 2 cut(s) 20, 645
TaaI ACNGT 1 cut(s) 814
TaiI ACGT 1 cut(s) 996
TaqII GACCGA 1 cut(s) 1011
TasI AATT 2 cut(s) 213, 501
TfiI GAWTC 2 cut(s) 167, 998
TscAI CASTG 3 cut(s) 255, 418, 766
TseFI GTSAC 3 cut(s) 104, 722, 739
TseI GCWGC 1 cut(s) 116
Tsp45I GTSAC 3 cut(s) 104, 722, 739
TspDTI ATGAA 1 cut(s) 823
TspGWI ACGGA 1 cut(s) 57
TspRI CASTG 3 cut(s) 255, 418, 766
VpaK11BI GGWCC 1 cut(s) 72
XbaI TCTAGA 1 cut(s) 586
XcmI CCANNNNNNNNNTGG 1 cut(s) 127
XmnI GAANNNNTTC 1 cut(s) 240
XspI CTAG 1 cut(s) 587
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.