Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000218.1

Orthogroup ID

OG0001439

Physical Location & Seq

Genomic Coordinates Reverse (-)

138403 .. 139470

Gene Structure 1068 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000218.1_g000036.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

atggagattgatcttacaccaaggttggctaagaaggtttatggaggagatggtggttcctactctgcctggtcgccgtcagagcttcccatgctccgtgaaggtgacatcggagctgccaagctctctctggagaaggacggctttgctctccccaattattccgactctgccagagttgcttatgtccttcaaggtaatggagtagtcgggattgttctgccggagaaggaagaaaaggttcttccagtgaagaaaggtgatgccattgccctcccttttggagttatcacttggtggtacaacaaggaggacactgagttcgtggttcttttcttgggtgataccaaaacagctcacaaaaggggtgagttcactgacttctatctcaatggctctaatggcattttcactggcttctcaattgagtttgtcggccgagcatgggatttggaggagagtgttgtgaagactcttgttggcaagcaaaccggcaagggcattgttaagttggggggagctaatttgcctgagccaaacaaggaacatagagatgggatgacattgaactgcgaagaggctcctcttgatgttgatattgagggcggtggaagagttgttgttttgaatactaataaccttcccttggtcggtgaggttgggcttggtgctgatcttgttaggttggatggaagtgctatgtgctcccctgggttttcgtgcgactctgcattgcaggtgacttacattgttaggggaagtggccgtgtccaagttgttggtgtcgatggaaagagggtcttggaaacaaccgttacagctggcaacttgttcatcgttcctcgattctttgtcgtttcaaagattgctgatccggaaggcttggaatggttctccatcatcaccacacccaatccaatattcactcatctggctggaagtattggtgcttggaaagcattgtctcctcaggtgcttgaggcttctttcaacgtggattcagatactgagaaactcttccaatcaaagagaactcatgatgcaatcttcttccctcctccgaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

355

Amino Acids

38.33

Weight (kDa)

5.07

Isoelectric Point (pI)

29.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001439)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07750 AT2G28680
fragaria_vesca	FvH4_2g37390 FvH4_3g34830 FvH4_3g34840
malus_domestica	MD03G1100900.v1.1 MD11G1115000.v1.1
prunus_persica	Prupe.6G085800_v2.0.a1 Prupe.6G085900_v2.0.a1
pyrus_communis	pycom03g08290 pycom11g09650
rosa_chinensis	RchiOBHm_Chr5g0062671 RchiOBHm_Chr5g0062681 RchiOBHm_Chr6g0304301
rosa_laevigata	RLG00000004146 RLG00000004904 RLG00000010993 RLG00000035570 RLG00000035572
rosa_multiflora	Rmu_sc0006470.1_g000001 Rmu_ssc0000218.1_g000036 Rmu_ssc0000472.1_g000022 Rmu_ssc0000472.1_g000023 Rmu_ssc0000472.1_g000028
rosa_roxburghii	Rroxscaffold_1G00017940 Rroxscaffold_1G00017950 Rroxscaffold_3G00260780 Rroxscaffold_7G00163860
rosa_rugosa	Rorug05G0350900 Rorug05G0351000 Rorug06G0329800 Rorug06G0470100 Rorug06G0493800 Rorug07G0020700
rosa_samantha	Rh5AG411700 Rh5AG411900 Rh5BG425700 Rh5BG425900 Rh5CG449800 Rh5CG450000 Rh5DG439700 Rh5DG439800 Rh6AG443200 Rh6BG459200 Rh6CG456000 Rh6DG442700 Rh7BG075100 Rh7BG100100 Rh7BG148700
rosa_wichuraiana	Rw5G038710 Rw5G038720 Rw6G038460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	727
Acc36I	ACCTGC	1 cut(s)	727
AccIII	TCCGGA	1 cut(s)	874
AciI	CCGC	1 cut(s)	606
AclWI	GGATC	1 cut(s)	866
AcoI	YGGCCR	2 cut(s)	436, 763
AdeI	CACNNNGTG	1 cut(s)	297
AfaI	GTAC	1 cut(s)	302
AfiI	CCNNNNNNNGG	3 cut(s)	445, 646, 650
AgsI	TTSAA	5 cut(s)	194, 568, 628, 861, 991
AjnI	CCWGG	2 cut(s)	68, 709
AjuI	GAANNNNNNNTTGG	2 cut(s)	905, 937
AloI	GAACNNNNNNTCC	2 cut(s)	305, 337
AluBI	AGCT	6 cut(s)	85, 116, 124, 356, 521, 821
AluI	AGCT	6 cut(s)	85, 116, 124, 356, 521, 821
Alw21I	GWGCWC	1 cut(s)	707
Alw26I	GTCTC	1 cut(s)	969
AlwI	GGATC	1 cut(s)	866
AlwNI	CAGNNNCTG	1 cut(s)	1007
Aor13HI	TCCGGA	1 cut(s)	874
AoxI	GGCC	2 cut(s)	436, 763
ApeKI	GCWGC	1 cut(s)	116
ArsI	GACNNNNNNTTYG	2 cut(s)	305, 337
Asp700I	GAANNNNTTC	2 cut(s)	240, 1016
AsuHPI	GGTGA	7 cut(s)	116, 272, 353, 380, 665, 751, 895
AxyI	CCTNAGG	1 cut(s)	969
BbsI	GAAGAC	1 cut(s)	476
Bbv12I	GWGCWC	1 cut(s)	707
BbvI	GCAGC	1 cut(s)	103
BccI	CCATC	5 cut(s)	44, 548, 683, 782, 905
BceAI	ACGGC	3 cut(s)	61, 157, 750
BciT130I	CCWGG	2 cut(s)	70, 711
BcoDI	GTCTC	1 cut(s)	969
BfuAI	ACCTGC	1 cut(s)	727
BisI	GCNGC	1 cut(s)	117
BlsI	GCNGC	1 cut(s)	118
Bme1390I	CCNGG	2 cut(s)	70, 711
BmiI	GGNNCC	2 cut(s)	58, 582
BmrFI	CCNGG	2 cut(s)	70, 711
BmsI	GCATC	2 cut(s)	253, 1030
BpiI	GAAGAC	1 cut(s)	476
BpmI	CTGGAG	1 cut(s)	152
Bpu10I	CCTNAGC	1 cut(s)	531
BpuEI	CTTGAG	1 cut(s)	998
BsaJI	CCNNGG	4 cut(s)	20, 645, 709, 710
BsaWI	WCCGGW	1 cut(s)	874
Bsc4I	CCNNNNNNNGG	3 cut(s)	445, 646, 650
Bse118I	RCCGGY	1 cut(s)	491
Bse1I	ACTGG	2 cut(s)	248, 418
Bse21I	CCTNAGG	1 cut(s)	969
Bse3DI	GCAATG	2 cut(s)	267, 731
BseAI	TCCGGA	1 cut(s)	874
BseBI	CCWGG	2 cut(s)	70, 711
BseDI	CCNNGG	4 cut(s)	20, 645, 709, 710
BseGI	GGATG	2 cut(s)	564, 694
BseLI	CCNNNNNNNGG	3 cut(s)	445, 646, 650
BseMI	GCAATG	2 cut(s)	267, 731
BseMII	CTCAG	4 cut(s)	309, 522, 983, 999
BseNI	ACTGG	2 cut(s)	248, 418
BseRI	GAGGAG	5 cut(s)	60, 470, 573, 957, 1047
BseX3I	CGGCCG	1 cut(s)	436
BseXI	GCAGC	1 cut(s)	103
Bsh1285I	CGRYCG	1 cut(s)	439
BshFI	GGCC	2 cut(s)	438, 765
BsiEI	CGRYCG	1 cut(s)	439
BsiHKAI	GWGCWC	1 cut(s)	707
BsiSI	CCGG	3 cut(s)	224, 492, 875
BslI	CCNNNNNNNGG	3 cut(s)	445, 646, 650
BsmAI	GTCTC	1 cut(s)	969
BsnI	GGCC	2 cut(s)	438, 765
Bsp1286I	GDGCHC	1 cut(s)	707
Bsp13I	TCCGGA	1 cut(s)	874
Bsp143I	GATC	3 cut(s)	10, 673, 871
BspACI	CCGC	1 cut(s)	606
BspANI	GGCC	2 cut(s)	438, 765
BspCNI	CTCAG	4 cut(s)	310, 523, 982, 1000
BspEI	TCCGGA	1 cut(s)	874
BspHI	TCATGA	1 cut(s)	1036
BspLI	GGNNCC	2 cut(s)	58, 582
BspMI	ACCTGC	1 cut(s)	727
BspPI	GGATC	1 cut(s)	866
BsrDI	GCAATG	2 cut(s)	267, 731
BsrFI	RCCGGY	1 cut(s)	491
BsrI	ACTGG	2 cut(s)	248, 418
BssAI	RCCGGY	1 cut(s)	491
BssECI	CCNNGG	4 cut(s)	20, 645, 709, 710
BssMI	GATC	3 cut(s)	10, 673, 871
BssT1I	CCWWGG	2 cut(s)	20, 645
Bst2UI	CCWGG	2 cut(s)	70, 711
Bst4CI	ACNGT	1 cut(s)	814
Bst6I	CTCTTC	3 cut(s)	570, 607, 1022
BstC8I	GCNNGC	2 cut(s)	485, 823
BstDEI	CTNAG	5 cut(s)	30, 318, 531, 969, 1008
BstF5I	GGATG	2 cut(s)	564, 694
BstKTI	GATC	3 cut(s)	13, 676, 874
BstMAI	GTCTC	1 cut(s)	969
BstMBI	GATC	3 cut(s)	10, 673, 871
BstMCI	CGRYCG	1 cut(s)	439
BstMWI	GCNNNNNNNGC	5 cut(s)	82, 91, 179, 402, 956
BstNI	CCWGG	2 cut(s)	70, 711
BstSCI	CCNGG	2 cut(s)	68, 709
BstV1I	GCAGC	1 cut(s)	103
BstV2I	GAAGAC	1 cut(s)	476
BstXI	CCANNNNNNTGG	1 cut(s)	779
BstZI	CGGCCG	1 cut(s)	436
Bsu36I	CCTNAGG	1 cut(s)	969
BsuRI	GGCC	2 cut(s)	438, 765
BtsCI	GGATG	2 cut(s)	564, 694
BtsIMutI	CAGTG	4 cut(s)	255, 315, 375, 411
BveI	ACCTGC	1 cut(s)	727
Cac8I	GCNNGC	2 cut(s)	485, 823
CaiI	CAGNNNCTG	1 cut(s)	1007
CciI	TCATGA	1 cut(s)	1036
Cfr10I	RCCGGY	1 cut(s)	491
Csp6I	GTAC	1 cut(s)	301
CviAII	CATG	3 cut(s)	91, 444, 1037
CviQI	GTAC	1 cut(s)	301
DdeI	CTNAG	5 cut(s)	30, 318, 531, 969, 1008
DpnI	GATC	3 cut(s)	12, 675, 873
DpnII	GATC	3 cut(s)	10, 673, 871
DraIII	CACNNNGTG	1 cut(s)	297
EaeI	YGGCCR	2 cut(s)	436, 763
EagI	CGGCCG	1 cut(s)	436
Eam1104I	CTCTTC	3 cut(s)	570, 607, 1022
EarI	CTCTTC	3 cut(s)	570, 607, 1022
EclXI	CGGCCG	1 cut(s)	436
Eco130I	CCWWGG	2 cut(s)	20, 645
Eco52I	CGGCCG	1 cut(s)	436
Eco81I	CCTNAGG	1 cut(s)	969
EcoRII	CCWGG	2 cut(s)	68, 709
EcoT14I	CCWWGG	2 cut(s)	20, 645
ErhI	CCWWGG	2 cut(s)	20, 645
FaeI	CATG	3 cut(s)	94, 447, 1040
FaiI	YATR	7 cut(s)	42, 92, 186, 445, 549, 701, 1038
FalI	AAGNNNNNCTT	4 cut(s)	128, 160, 785, 817
FatI	CATG	3 cut(s)	90, 443, 1036
Fnu4HI	GCNGC	1 cut(s)	117
FokI	GGATG	2 cut(s)	571, 701
Fsp4HI	GCNGC	1 cut(s)	117
GluI	GCNGC	1 cut(s)	117
GsuI	CTGGAG	1 cut(s)	152
HaeIII	GGCC	2 cut(s)	438, 765
HapII	CCGG	3 cut(s)	224, 492, 875
Hin1II	CATG	3 cut(s)	94, 447, 1040
HinfI	GANTC	5 cut(s)	167, 472, 725, 846, 998
HpaII	CCGG	3 cut(s)	224, 492, 875
HphI	GGTGA	7 cut(s)	116, 272, 353, 380, 665, 751, 895
Hpy166II	GTNNAC	1 cut(s)	375
Hpy188I	TCNGA	5 cut(s)	82, 113, 166, 1003, 1062
Hpy188III	TCNNGA	5 cut(s)	131, 211, 587, 875, 1037
Hpy8I	GTNNAC	1 cut(s)	375
HpyAV	CCTTC	7 cut(s)	28, 95, 130, 200, 223, 650, 872
HpyCH4III	ACNGT	1 cut(s)	814
HpyCH4IV	ACGT	1 cut(s)	993
HpyCH4V	TGCA	3 cut(s)	731, 736, 1043
HpyF10VI	GCNNNNNNNGC	5 cut(s)	82, 91, 179, 402, 956
HpyF3I	CTNAG	5 cut(s)	30, 318, 531, 969, 1008
HpySE526I	ACGT	1 cut(s)	993
Hsp92II	CATG	3 cut(s)	94, 447, 1040
Kpn2I	TCCGGA	1 cut(s)	874
Kzo9I	GATC	3 cut(s)	10, 673, 871
LmnI	GCTCC	5 cut(s)	99, 113, 518, 586, 710
Lsp1109I	GCAGC	1 cut(s)	103
LweI	GCATC	2 cut(s)	253, 1030
MaeII	ACGT	1 cut(s)	993
MaeIII	GTNAC	3 cut(s)	104, 739, 814
MalI	GATC	3 cut(s)	12, 675, 873
MboI	GATC	3 cut(s)	10, 673, 871
MboII	GAAGA	9 cut(s)	236, 245, 265, 481, 587, 624, 1009, 1039, 1042
MfeI	CAATTG	1 cut(s)	423
MhlI	GDGCHC	1 cut(s)	707
MluCI	AATT	3 cut(s)	157, 423, 523
MlyI	GAGTC	3 cut(s)	161, 466, 719
MmeI	TCCRAC	2 cut(s)	189, 666
MroI	TCCGGA	1 cut(s)	874
MroXI	GAANNNNTTC	2 cut(s)	240, 1016
MseI	TTAA	1 cut(s)	507
MslI	CAYNNNNRTG	1 cut(s)	552
MspA1I	CMGCKG	1 cut(s)	821
MspI	CCGG	3 cut(s)	224, 492, 875
MspR9I	CCNGG	2 cut(s)	70, 711
MunI	CAATTG	1 cut(s)	423
MvaI	CCWGG	2 cut(s)	70, 711
MwoI	GCNNNNNNNGC	5 cut(s)	82, 91, 179, 402, 956
NdeII	GATC	3 cut(s)	10, 673, 871
NlaIII	CATG	3 cut(s)	94, 447, 1040
NlaIV	GGNNCC	2 cut(s)	58, 582
NmeAIII	GCCGAG	1 cut(s)	464
NmuCI	GTSAC	2 cut(s)	104, 739
PagI	TCATGA	1 cut(s)	1036
PaqCI	CACCTGC	1 cut(s)	727
PasI	CCCWGGG	1 cut(s)	710
PdmI	GAANNNNTTC	2 cut(s)	240, 1016
PfeI	GAWTC	2 cut(s)	846, 998
PkrI	GCNGC	1 cut(s)	118
PleI	GAGTC	3 cut(s)	161, 466, 719
PpsI	GAGTC	3 cut(s)	161, 466, 719
Psp6I	CCWGG	2 cut(s)	68, 709
PspGI	CCWGG	2 cut(s)	68, 709
PspN4I	GGNNCC	2 cut(s)	58, 582
PstNI	CAGNNNCTG	1 cut(s)	1007
PvuII	CAGCTG	1 cut(s)	821
RsaI	GTAC	1 cut(s)	302
RsaNI	GTAC	1 cut(s)	301
RseI	CAYNNNNRTG	1 cut(s)	552
SaqAI	TTAA	1 cut(s)	507
SatI	GCNGC	1 cut(s)	117
Sau3AI	GATC	3 cut(s)	10, 673, 871
SchI	GAGTC	3 cut(s)	161, 466, 719
ScrFI	CCNGG	2 cut(s)	70, 711
SduI	GDGCHC	1 cut(s)	707
SfaNI	GCATC	2 cut(s)	253, 1030
SmiMI	CAYNNNNRTG	1 cut(s)	552
SmlI	CTYRAG	1 cut(s)	977
SmoI	CTYRAG	1 cut(s)	977
Sse9I	AATT	3 cut(s)	157, 423, 523
SsiI	CCGC	1 cut(s)	606
SspI	AATATT	1 cut(s)	921
StyD4I	CCNGG	2 cut(s)	68, 709
StyI	CCWWGG	2 cut(s)	20, 645
TaaI	ACNGT	1 cut(s)	814
TaiI	ACGT	1 cut(s)	996
TaqI	TCGA	2 cut(s)	786, 844
TasI	AATT	3 cut(s)	157, 423, 523
TfiI	GAWTC	2 cut(s)	846, 998
Tru1I	TTAA	1 cut(s)	507
Tru9I	TTAA	1 cut(s)	507
TscAI	CASTG	4 cut(s)	255, 322, 382, 418
TseFI	GTSAC	2 cut(s)	104, 739
TseI	GCWGC	1 cut(s)	116
Tsp45I	GTSAC	2 cut(s)	104, 739
TspDTI	ATGAA	1 cut(s)	823
TspGWI	ACGGA	1 cut(s)	86
TspRI	CASTG	4 cut(s)	255, 322, 382, 418
XcmI	CCANNNNNNNNNTGG	1 cut(s)	127
XmnI	GAANNNNTTC	2 cut(s)	240, 1016

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.