Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001439

Physical Location & Seq

Genomic Coordinates Reverse (-)

21974499 .. 21976167

Gene Structure 1669 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00017940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGGAGATTGATCTTACACCGAGGTTGGCTAAGAAGGTTTATGGAGGAGATGGTGGTTCCTACTCTGCCTGGTCCCCGTCGGAGCTTCCCATGCTCCGGGAAGGTGACATCGGAGCTGCCAAGCTCTCTCTGGAGAGGGACGGCTTTGCTCTCCCCAGTTACTCTGACTCTGCCAGAGTTGCTTATGTCCTTCAAGGTAATGGAGTAGTCGGAATTGTTCTGCCGGAGAAAGAAGAAAAAGTTCTTCCGGTGAAGAAGGGTGATGCCATTGCTCTGCCTTTTGGAGTTATCACTTGGTGGTACAACAAGGAGGACACTGAGTTTGTGGTTCTTTTCTTGGGTGATACCAAAACAGCTCACAAACGGGGAGAGTTCACCAATTTCTATCTCAATGGTTCTAATGGCATTTTCACTGGCTTCTCAACTGAGTTTGTCGGCCGAGCATGGGATTTGGAGGAGAGCGTTAAGGAACATAGAGATGGGATGACATTGAACTGCGAAGAGGCTCCTCTTGATGTTGATATCAAGGGTGGTGGGAGAGTTGTTGTTTTGAATACTAAGAATCTTCCTTTGGTTGGTGAGGTTGGGCTTGGTGCTGATCTTGTTAGGTTGGACGGAAGTGCCATGTGCTCCCCTGGGTTTTCTTGTGACTCTGCATTGCAGGTGACCTACATTGTTAGGGGCAGTGGCCGTGTGCAAGTTGTTGGTGTAGATGGGAAGAGGGTCTTGGAAACAACTGTTACAGCTGGCAACTTGTTCATTGTTCCTCGATTCTTTGTCGTTTCAAAGATTGCTGATCCAGAAGGCTTGGAATGGTTCTCCATCATCACCACTCCCAACCCAATATTCACTCATTTGGCTGGAAGTATTGGAGCTTGGAAGGCATTATCTCCTCAGGTTCTTGAGGCTTCCTTCAAAGTGGATTCAGACACTGAGAAACTCTTCCGATCAAAGAGAACTTCTGATGCAATCTTCTTCCCTCCTCCAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

330

Amino Acids

35.82

Weight (kDa)

5.22

Isoelectric Point (pI)

27.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	11 - 154	6.6e-23	Cupin
Cupin_1	PF00190	173 - 312	6e-23	Cupin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001439)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07750 AT2G28680
fragaria_vesca	FvH4_2g37390 FvH4_3g34830 FvH4_3g34840
malus_domestica	MD03G1100900.v1.1 MD11G1115000.v1.1
prunus_persica	Prupe.6G085800_v2.0.a1 Prupe.6G085900_v2.0.a1
pyrus_communis	pycom03g08290 pycom11g09650
rosa_chinensis	RchiOBHm_Chr5g0062671 RchiOBHm_Chr5g0062681 RchiOBHm_Chr6g0304301
rosa_laevigata	RLG00000004146 RLG00000004904 RLG00000010993 RLG00000035570 RLG00000035572
rosa_multiflora	Rmu_sc0006470.1_g000001 Rmu_ssc0000218.1_g000036 Rmu_ssc0000472.1_g000022 Rmu_ssc0000472.1_g000023 Rmu_ssc0000472.1_g000028
rosa_roxburghii	Rroxscaffold_1G00017940 Rroxscaffold_1G00017950 Rroxscaffold_3G00260780 Rroxscaffold_7G00163860
rosa_rugosa	Rorug05G0350900 Rorug05G0351000 Rorug06G0329800 Rorug06G0470100 Rorug06G0493800 Rorug07G0020700
rosa_samantha	Rh5AG411700 Rh5AG411900 Rh5BG425700 Rh5BG425900 Rh5CG449800 Rh5CG450000 Rh5DG439700 Rh5DG439800 Rh6AG443200 Rh6BG459200 Rh6CG456000 Rh6DG442700 Rh7BG075100 Rh7BG100100 Rh7BG148700
rosa_wichuraiana	Rw5G038710 Rw5G038720 Rw6G038460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	652
Acc36I	ACCTGC	1 cut(s)	652
AclWI	GGATC	1 cut(s)	791
AcoI	YGGCCR	2 cut(s)	436, 688
AdeI	CACNNNGTG	1 cut(s)	297
AfaI	GTAC	1 cut(s)	302
AfiI	CCNNNNNNNGG	3 cut(s)	96, 445, 575
AgsI	TTSAA	5 cut(s)	194, 493, 553, 786, 916
AjnI	CCWGG	2 cut(s)	68, 634
AjuI	GAANNNNNNNTTGG	6 cut(s)	554, 586, 710, 742, 830, 862
AluBI	AGCT	6 cut(s)	85, 116, 124, 356, 746, 875
AluI	AGCT	6 cut(s)	85, 116, 124, 356, 746, 875
Alw21I	GWGCWC	1 cut(s)	632
AlwI	GGATC	1 cut(s)	791
AlwNI	CAGNNNCTG	1 cut(s)	932
AoxI	GGCC	2 cut(s)	436, 688
ApeKI	GCWGC	1 cut(s)	116
ArsI	GACNNNNNNTTYG	2 cut(s)	305, 337
Asp700I	GAANNNNTTC	2 cut(s)	240, 941
AspS9I	GGNCC	1 cut(s)	72
AsuC2I	CCSGG	1 cut(s)	98
AsuHPI	GGTGA	8 cut(s)	116, 262, 272, 353, 367, 590, 676, 820
AvaII	GGWCC	1 cut(s)	72
AxyI	CCTNAGG	1 cut(s)	894
Bbv12I	GWGCWC	1 cut(s)	632
BbvI	GCAGC	1 cut(s)	103
BccI	CCATC	4 cut(s)	44, 473, 707, 830
BceAI	ACGGC	2 cut(s)	157, 675
BciT130I	CCWGG	2 cut(s)	70, 636
BcnI	CCSGG	1 cut(s)	98
BfuAI	ACCTGC	1 cut(s)	652
BisI	GCNGC	1 cut(s)	117
BlsI	GCNGC	1 cut(s)	118
Bme1390I	CCNGG	3 cut(s)	70, 98, 636
Bme18I	GGWCC	1 cut(s)	72
BmgT120I	GGNCC	1 cut(s)	72
BmiI	GGNNCC	3 cut(s)	58, 74, 507
BmrFI	CCNGG	3 cut(s)	70, 98, 636
BmrI	ACTGGG	1 cut(s)	150
BmsI	GCATC	2 cut(s)	253, 955
BmuI	ACTGGG	1 cut(s)	150
BpmI	CTGGAG	1 cut(s)	152
BpuEI	CTTGAG	1 cut(s)	923
BpuMI	CCSGG	1 cut(s)	98
BsaJI	CCNNGG	3 cut(s)	20, 634, 635
BsaWI	WCCGGW	1 cut(s)	247
Bsc4I	CCNNNNNNNGG	3 cut(s)	96, 445, 575
Bse1I	ACTGG	2 cut(s)	156, 418
Bse21I	CCTNAGG	1 cut(s)	894
Bse3DI	GCAATG	2 cut(s)	267, 656
BseBI	CCWGG	2 cut(s)	70, 636
BseDI	CCNNGG	3 cut(s)	20, 634, 635
BseGI	GGATG	1 cut(s)	489
BseLI	CCNNNNNNNGG	3 cut(s)	96, 445, 575
BseMI	GCAATG	2 cut(s)	267, 656
BseMII	CTCAG	4 cut(s)	309, 417, 908, 924
BseNI	ACTGG	2 cut(s)	156, 418
BseRI	GAGGAG	5 cut(s)	60, 470, 498, 882, 972
BseX3I	CGGCCG	1 cut(s)	436
BseXI	GCAGC	1 cut(s)	103
Bsh1285I	CGRYCG	1 cut(s)	439
BshFI	GGCC	2 cut(s)	438, 690
BsiEI	CGRYCG	1 cut(s)	439
BsiHKAI	GWGCWC	1 cut(s)	632
BsiSI	CCGG	3 cut(s)	97, 224, 248
BslFI	GGGAC	2 cut(s)	58, 152
BslI	CCNNNNNNNGG	3 cut(s)	96, 445, 575
BsmFI	GGGAC	2 cut(s)	58, 152
BsnI	GGCC	2 cut(s)	438, 690
Bsp1286I	GDGCHC	1 cut(s)	632
Bsp143I	GATC	4 cut(s)	10, 598, 796, 947
BspANI	GGCC	2 cut(s)	438, 690
BspCNI	CTCAG	4 cut(s)	310, 418, 907, 925
BspLI	GGNNCC	3 cut(s)	58, 74, 507
BspMI	ACCTGC	1 cut(s)	652
BspPI	GGATC	1 cut(s)	791
BsrDI	GCAATG	2 cut(s)	267, 656
BsrI	ACTGG	2 cut(s)	156, 418
BssECI	CCNNGG	3 cut(s)	20, 634, 635
BssMI	GATC	4 cut(s)	10, 598, 796, 947
Bst2UI	CCWGG	2 cut(s)	70, 636
Bst4CI	ACNGT	1 cut(s)	739
Bst6I	CTCTTC	3 cut(s)	495, 713, 947
BstC8I	GCNNGC	1 cut(s)	748
BstDEI	CTNAG	6 cut(s)	30, 318, 426, 558, 894, 933
BstEII	GGTNACC	1 cut(s)	664
BstF5I	GGATG	1 cut(s)	489
BstKTI	GATC	4 cut(s)	13, 601, 799, 950
BstMBI	GATC	4 cut(s)	10, 598, 796, 947
BstMCI	CGRYCG	1 cut(s)	439
BstMWI	GCNNNNNNNGC	3 cut(s)	91, 179, 881
BstNI	CCWGG	2 cut(s)	70, 636
BstPI	GGTNACC	1 cut(s)	664
BstSCI	CCNGG	3 cut(s)	68, 96, 634
BstV1I	GCAGC	1 cut(s)	103
BstZI	CGGCCG	1 cut(s)	436
Bsu36I	CCTNAGG	1 cut(s)	894
BsuRI	GGCC	2 cut(s)	438, 690
BtsCI	GGATG	1 cut(s)	489
BtsI	GCAGTG	1 cut(s)	691
BtsIMutI	CAGTG	4 cut(s)	315, 411, 691, 930
BveI	ACCTGC	1 cut(s)	652
Cac8I	GCNNGC	1 cut(s)	748
CaiI	CAGNNNCTG	1 cut(s)	932
Cfr13I	GGNCC	1 cut(s)	72
Csp6I	GTAC	1 cut(s)	301
CspCI	CAANNNNNGTGG	2 cut(s)	514, 549
CviAII	CATG	3 cut(s)	91, 444, 625
CviQI	GTAC	1 cut(s)	301
DdeI	CTNAG	6 cut(s)	30, 318, 426, 558, 894, 933
DpnI	GATC	4 cut(s)	12, 600, 798, 949
DpnII	GATC	4 cut(s)	10, 598, 796, 947
DraIII	CACNNNGTG	1 cut(s)	297
EaeI	YGGCCR	2 cut(s)	436, 688
EagI	CGGCCG	1 cut(s)	436
Eam1104I	CTCTTC	3 cut(s)	495, 713, 947
EarI	CTCTTC	3 cut(s)	495, 713, 947
EclXI	CGGCCG	1 cut(s)	436
Eco32I	GATATC	1 cut(s)	523
Eco47I	GGWCC	1 cut(s)	72
Eco52I	CGGCCG	1 cut(s)	436
Eco81I	CCTNAGG	1 cut(s)	894
Eco91I	GGTNACC	1 cut(s)	664
EcoO65I	GGTNACC	1 cut(s)	664
EcoRII	CCWGG	2 cut(s)	68, 634
EcoRV	GATATC	1 cut(s)	523
FaeI	CATG	3 cut(s)	94, 447, 628
FaiI	YATR	6 cut(s)	42, 92, 186, 445, 474, 626
FalI	AAGNNNNNCTT	2 cut(s)	710, 742
FaqI	GGGAC	2 cut(s)	58, 152
FatI	CATG	3 cut(s)	90, 443, 624
Fnu4HI	GCNGC	1 cut(s)	117
FokI	GGATG	1 cut(s)	496
Fsp4HI	GCNGC	1 cut(s)	117
GluI	GCNGC	1 cut(s)	117
GsuI	CTGGAG	1 cut(s)	152
HaeIII	GGCC	2 cut(s)	438, 690
HapII	CCGG	3 cut(s)	97, 224, 248
Hin1II	CATG	3 cut(s)	94, 447, 628
HinfI	GANTC	5 cut(s)	167, 562, 650, 771, 923
HpaII	CCGG	3 cut(s)	97, 224, 248
HphI	GGTGA	8 cut(s)	116, 262, 272, 353, 367, 590, 676, 820
Hpy166II	GTNNAC	1 cut(s)	375
Hpy188I	TCNGA	7 cut(s)	82, 113, 166, 212, 928, 947, 964
Hpy188III	TCNNGA	4 cut(s)	131, 512, 800, 902
Hpy8I	GTNNAC	1 cut(s)	375
Hpy99I	CGWCG	1 cut(s)	82
HpyAV	CCTTC	7 cut(s)	28, 95, 200, 250, 797, 874, 922
HpyCH4III	ACNGT	1 cut(s)	739
HpyCH4V	TGCA	4 cut(s)	656, 661, 697, 968
HpyF10VI	GCNNNNNNNGC	3 cut(s)	91, 179, 881
HpyF3I	CTNAG	6 cut(s)	30, 318, 426, 558, 894, 933
Hsp92II	CATG	3 cut(s)	94, 447, 628
Kzo9I	GATC	4 cut(s)	10, 598, 796, 947
LmnI	GCTCC	6 cut(s)	82, 99, 113, 511, 635, 872
Lsp1109I	GCAGC	1 cut(s)	103
LweI	GCATC	2 cut(s)	253, 955
MaeIII	GTNAC	5 cut(s)	104, 158, 647, 664, 739
MalI	GATC	4 cut(s)	12, 600, 798, 949
MboI	GATC	4 cut(s)	10, 598, 796, 947
MboII	GAAGA	9 cut(s)	236, 245, 265, 512, 557, 730, 934, 964, 967
MhlI	GDGCHC	1 cut(s)	632
MluCI	AATT	2 cut(s)	213, 379
MlyI	GAGTC	2 cut(s)	161, 644
MmeI	TCCRAC	3 cut(s)	60, 190, 591
MroXI	GAANNNNTTC	2 cut(s)	240, 941
MseI	TTAA	1 cut(s)	465
MslI	CAYNNNNRTG	1 cut(s)	477
MspA1I	CMGCKG	1 cut(s)	746
MspI	CCGG	3 cut(s)	97, 224, 248
MspR9I	CCNGG	3 cut(s)	70, 98, 636
MvaI	CCWGG	2 cut(s)	70, 636
MwoI	GCNNNNNNNGC	3 cut(s)	91, 179, 881
NciI	CCSGG	1 cut(s)	98
NdeII	GATC	4 cut(s)	10, 598, 796, 947
NlaIII	CATG	3 cut(s)	94, 447, 628
NlaIV	GGNNCC	3 cut(s)	58, 74, 507
NmeAIII	GCCGAG	1 cut(s)	464
NmuCI	GTSAC	3 cut(s)	104, 647, 664
PaqCI	CACCTGC	1 cut(s)	652
PasI	CCCWGGG	1 cut(s)	635
PdmI	GAANNNNTTC	2 cut(s)	240, 941
PfeI	GAWTC	3 cut(s)	562, 771, 923
PfoI	TCCNGGA	1 cut(s)	96
PkrI	GCNGC	1 cut(s)	118
PleI	GAGTC	2 cut(s)	161, 644
PpsI	GAGTC	2 cut(s)	161, 644
Psp6I	CCWGG	2 cut(s)	68, 634
PspEI	GGTNACC	1 cut(s)	664
PspGI	CCWGG	2 cut(s)	68, 634
PspN4I	GGNNCC	3 cut(s)	58, 74, 507
PspPI	GGNCC	1 cut(s)	72
PstNI	CAGNNNCTG	1 cut(s)	932
PvuII	CAGCTG	1 cut(s)	746
RsaI	GTAC	1 cut(s)	302
RsaNI	GTAC	1 cut(s)	301
RseI	CAYNNNNRTG	1 cut(s)	477
SaqAI	TTAA	1 cut(s)	465
SatI	GCNGC	1 cut(s)	117
Sau3AI	GATC	4 cut(s)	10, 598, 796, 947
Sau96I	GGNCC	1 cut(s)	72
SchI	GAGTC	2 cut(s)	161, 644
ScrFI	CCNGG	3 cut(s)	70, 98, 636
SduI	GDGCHC	1 cut(s)	632
SfaNI	GCATC	2 cut(s)	253, 955
SinI	GGWCC	1 cut(s)	72
SmiMI	CAYNNNNRTG	1 cut(s)	477
SmlI	CTYRAG	1 cut(s)	902
SmoI	CTYRAG	1 cut(s)	902
Sse9I	AATT	2 cut(s)	213, 379
SspI	AATATT	1 cut(s)	846
StyD4I	CCNGG	3 cut(s)	68, 96, 634
TaaI	ACNGT	1 cut(s)	739
TaqI	TCGA	1 cut(s)	769
TasI	AATT	2 cut(s)	213, 379
TfiI	GAWTC	3 cut(s)	562, 771, 923
Tru1I	TTAA	1 cut(s)	465
Tru9I	TTAA	1 cut(s)	465
TscAI	CASTG	4 cut(s)	322, 418, 691, 937
TseFI	GTSAC	3 cut(s)	104, 647, 664
TseI	GCWGC	1 cut(s)	116
Tsp45I	GTSAC	3 cut(s)	104, 647, 664
TspDTI	ATGAA	1 cut(s)	748
TspGWI	ACGGA	1 cut(s)	630
TspRI	CASTG	4 cut(s)	322, 418, 691, 937
VpaK11BI	GGWCC	1 cut(s)	72
XcmI	CCANNNNNNNNNTGG	1 cut(s)	127
XmnI	GAANNNNTTC	2 cut(s)	240, 941

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.