Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0001439

Physical Location & Seq

Genomic Coordinates Reverse (-)

30110771 .. 30114131

Gene Structure 3361 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g34830.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGGATATTGATCTTTCACCAAAGTTGGCCAAGAAGGTTGGTGAAGGAGATGGAGGTTCTTACTTTGCTTGGTGCCCATCGGAGCTTCCCATGCTCCGTGAAGGTAACATCGGCGCTGCCAAGCTCGCCCTTGAGAAGAACGGCTTTGCTCTCCCCAATTACTGTGATTCTGCCAGAGTTGCTTATATTCTCCAAGGAAGTGGTACTGTTGGAATTGTCCTCCCGGAGAAGGAAGAGAAGGTTGTACCAGTGAAGAAGGGTGATGCCCTCGCCCTCCCTTTTGGAGTGATCACATGGTGGCACAACAAGGAGGACGCTGAGTTCGTAGTTCTTTTCTTGGGTGATACCAAAACAGCTCATAAAAGGGGTGAGTTCACCATCTTCTATCTCACTGGTACTAATGGCATTTTCACTGGCTTCTCAACTGAGTTTGTCAGCCGAGCATGGGATTTGGAGGAGAGTGTTGTAAAGACTCTTGTTGGCAAGCAAACCGGCAAGGGCATTGTTAAGTTGGCGGGATCTAATATGCCTGAGCCAAAGCAGGAACATAGAGATGGGATGGCATTGAATTGCGAAGAGGCTCCTCTAGATGTTGATATCAAGGGTGGTGGAAGAGTTGTTCTGTTGAATACTAAGAACCTTCCTTTGGTCGGAGAGGTTGGATGTGGTGCTGATCTTGTTAGGTTGGACGGAGGTGCCATGTGCTCCCCTGGTTTTTCTTGTGACTCAGCATTGCAGGTGACTTACATTGTTAGGGGCAGTGGCCGTGCCCAAGTTGTTGGTGTTGATGGGAAGAGGGTCTTGGAAACAACAGTAAAAGCCGGTAACTTGTTCATTGTTCCTAGATTCTTTATTGTTTCCAAAATTGCTGATCCAGAAGGCTTGGAATGGTTCTCCATCATCACCACTCCCAATCCGATCTTCACCCACATGGCTGGAAGTATTGGTTGTTGGAAAGGTTTATCTCCTATGGTGCTCGAGTCTGCTTTCAATGTGGATTCGGAGACTGAGCACCTATTCCGTTCTAAGAGGACTTCGGATGCAATCTTCTTCCCGCCACCAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

356

Amino Acids

38.3

Weight (kDa)

5.69

Isoelectric Point (pI)

34.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	13 - 156	6.6e-22	Cupin
Cupin_1	PF00190	198 - 337	7.6e-22	Cupin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001439)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07750 AT2G28680
fragaria_vesca	FvH4_2g37390 FvH4_3g34830 FvH4_3g34840
malus_domestica	MD03G1100900.v1.1 MD11G1115000.v1.1
prunus_persica	Prupe.6G085800_v2.0.a1 Prupe.6G085900_v2.0.a1
pyrus_communis	pycom03g08290 pycom11g09650
rosa_chinensis	RchiOBHm_Chr5g0062671 RchiOBHm_Chr5g0062681 RchiOBHm_Chr6g0304301
rosa_laevigata	RLG00000004146 RLG00000004904 RLG00000010993 RLG00000035570 RLG00000035572
rosa_multiflora	Rmu_sc0006470.1_g000001 Rmu_ssc0000218.1_g000036 Rmu_ssc0000472.1_g000022 Rmu_ssc0000472.1_g000023 Rmu_ssc0000472.1_g000028
rosa_roxburghii	Rroxscaffold_1G00017940 Rroxscaffold_1G00017950 Rroxscaffold_3G00260780 Rroxscaffold_7G00163860
rosa_rugosa	Rorug05G0350900 Rorug05G0351000 Rorug06G0329800 Rorug06G0470100 Rorug06G0493800 Rorug07G0020700
rosa_samantha	Rh5AG411700 Rh5AG411900 Rh5BG425700 Rh5BG425900 Rh5CG449800 Rh5CG450000 Rh5DG439700 Rh5DG439800 Rh6AG443200 Rh6BG459200 Rh6CG456000 Rh6DG442700 Rh7BG075100 Rh7BG100100 Rh7BG148700
rosa_wichuraiana	Rw5G038710 Rw5G038720 Rw6G038460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	727
Acc36I	ACCTGC	1 cut(s)	727
AccB1I	GGYRCC	2 cut(s)	72, 695
AciI	CCGC	2 cut(s)	515, 1055
AclWI	GGATC	2 cut(s)	526, 866
AcoI	YGGCCR	2 cut(s)	27, 763
AdeI	CACNNNGTG	1 cut(s)	297
AfaI	GTAC	3 cut(s)	205, 246, 397
AfiI	CCNNNNNNNGG	4 cut(s)	229, 445, 646, 650
AgsI	TTSAA	3 cut(s)	568, 628, 991
AjnI	CCWGG	1 cut(s)	709
AjuI	GAANNNNNNNTTGG	6 cut(s)	629, 661, 785, 817, 905, 937
AloI	GAACNNNNNNTCC	4 cut(s)	305, 337, 603, 635
AluBI	AGCT	3 cut(s)	85, 124, 356
AluI	AGCT	3 cut(s)	85, 124, 356
Alw21I	GWGCWC	3 cut(s)	707, 978, 1014
Alw26I	GTCTC	1 cut(s)	998
AlwI	GGATC	2 cut(s)	526, 866
Ama87I	CYCGRG	1 cut(s)	977
AoxI	GGCC	2 cut(s)	27, 763
ApeKI	GCWGC	1 cut(s)	116
ArsI	GACNNNNNNTTYG	2 cut(s)	305, 337
AspLEI	GCGC	1 cut(s)	116
AsuC2I	CCSGG	1 cut(s)	224
AsuHPI	GGTGA	9 cut(s)	9, 53, 272, 353, 367, 380, 751, 895, 916
AvaI	CYCGRG	1 cut(s)	977
BaeGI	GKGCMC	2 cut(s)	77, 772
BalI	TGGCCA	1 cut(s)	29
BanI	GGYRCC	2 cut(s)	72, 695
Bbv12I	GWGCWC	3 cut(s)	707, 978, 1014
BbvI	GCAGC	1 cut(s)	103
BccI	CCATC	7 cut(s)	44, 85, 386, 548, 553, 782, 905
BceAI	ACGGC	2 cut(s)	157, 750
BciT130I	CCWGG	1 cut(s)	711
BclI	TGATCA	1 cut(s)	288
BcnI	CCSGG	1 cut(s)	224
BcoDI	GTCTC	1 cut(s)	998
BfaI	CTAG	2 cut(s)	587, 843
BfoI	RGCGCY	1 cut(s)	117
BfuAI	ACCTGC	1 cut(s)	727
BisI	GCNGC	1 cut(s)	117
BlsI	GCNGC	1 cut(s)	118
Bme1390I	CCNGG	2 cut(s)	224, 711
BmeT110I	CYCGRG	1 cut(s)	977
BmiI	GGNNCC	3 cut(s)	74, 582, 697
BmrFI	CCNGG	2 cut(s)	224, 711
BmsI	GCATC	2 cut(s)	253, 1030
Bpu10I	CCTNAGC	1 cut(s)	531
BpuEI	CTTGAG	1 cut(s)	152
BpuMI	CCSGG	1 cut(s)	224
BsaBI	GATNNNNATC	1 cut(s)	9
BsaJI	CCNNGG	2 cut(s)	193, 709
Bsc4I	CCNNNNNNNGG	4 cut(s)	229, 445, 646, 650
Bse118I	RCCGGY	2 cut(s)	491, 821
Bse1I	ACTGG	3 cut(s)	248, 397, 418
Bse3DI	GCAATG	1 cut(s)	731
Bse8I	GATNNNNATC	1 cut(s)	9
BseBI	CCWGG	1 cut(s)	711
BseDI	CCNNGG	2 cut(s)	193, 709
BseGI	GGATG	3 cut(s)	564, 668, 1045
BseJI	GATNNNNATC	1 cut(s)	9
BseLI	CCNNNNNNNGG	4 cut(s)	229, 445, 646, 650
BseMI	GCAATG	1 cut(s)	731
BseMII	CTCAG	5 cut(s)	309, 417, 522, 741, 999
BseNI	ACTGG	3 cut(s)	248, 397, 418
BseRI	GAGGAG	2 cut(s)	470, 573
BseSI	GKGCMC	2 cut(s)	77, 772
BseXI	GCAGC	1 cut(s)	103
BshFI	GGCC	2 cut(s)	29, 765
BshNI	GGYRCC	2 cut(s)	72, 695
BsiHKAI	GWGCWC	3 cut(s)	707, 978, 1014
BsiHKCI	CYCGRG	1 cut(s)	977
BsiSI	CCGG	3 cut(s)	224, 492, 822
BslI	CCNNNNNNNGG	4 cut(s)	229, 445, 646, 650
BsmAI	GTCTC	1 cut(s)	998
BsnI	GGCC	2 cut(s)	29, 765
BsoBI	CYCGRG	1 cut(s)	977
Bsp1286I	GDGCHC	5 cut(s)	77, 707, 772, 978, 1014
Bsp143I	GATC	6 cut(s)	10, 288, 518, 673, 871, 918
BspACI	CCGC	2 cut(s)	515, 1055
BspANI	GGCC	2 cut(s)	29, 765
BspCNI	CTCAG	5 cut(s)	310, 418, 523, 740, 1000
BspLI	GGNNCC	3 cut(s)	74, 582, 697
BspMI	ACCTGC	1 cut(s)	727
BspPI	GGATC	2 cut(s)	526, 866
BspT107I	GGYRCC	2 cut(s)	72, 695
BsrDI	GCAATG	1 cut(s)	731
BsrFI	RCCGGY	2 cut(s)	491, 821
BsrI	ACTGG	3 cut(s)	248, 397, 418
BssAI	RCCGGY	2 cut(s)	491, 821
BssECI	CCNNGG	2 cut(s)	193, 709
BssMI	GATC	6 cut(s)	10, 288, 518, 673, 871, 918
BssT1I	CCWWGG	1 cut(s)	193
Bst2UI	CCWGG	1 cut(s)	711
Bst4CI	ACNGT	3 cut(s)	164, 208, 814
Bst6I	CTCTTC	4 cut(s)	228, 570, 607, 788
BstC8I	GCNNGC	2 cut(s)	126, 485
BstDEI	CTNAG	7 cut(s)	318, 426, 531, 633, 727, 1008, 1026
BstF5I	GGATG	3 cut(s)	564, 668, 1045
BstH2I	RGCGCY	1 cut(s)	117
BstHHI	GCGC	1 cut(s)	116
BstKTI	GATC	6 cut(s)	13, 291, 521, 676, 874, 921
BstMAI	GTCTC	1 cut(s)	998
BstMBI	GATC	6 cut(s)	10, 288, 518, 673, 871, 918
BstMWI	GCNNNNNNNGC	3 cut(s)	91, 125, 179
BstNI	CCWGG	1 cut(s)	711
BstSCI	CCNGG	2 cut(s)	222, 709
BstSLI	GKGCMC	2 cut(s)	77, 772
BstV1I	GCAGC	1 cut(s)	103
BstX2I	RGATCY	1 cut(s)	518
BstXI	CCANNNNNNTGG	3 cut(s)	200, 779, 935
BstYI	RGATCY	1 cut(s)	518
BsuRI	GGCC	2 cut(s)	29, 765
BtsCI	GGATG	3 cut(s)	564, 668, 1045
BtsI	GCAGTG	1 cut(s)	766
BtsIMutI	CAGTG	4 cut(s)	255, 390, 411, 766
BveI	ACCTGC	1 cut(s)	727
Cac8I	GCNNGC	2 cut(s)	126, 485
CfoI	GCGC	1 cut(s)	116
Cfr10I	RCCGGY	2 cut(s)	491, 821
CseI	GACGC	1 cut(s)	323
Csp6I	GTAC	3 cut(s)	204, 245, 396
CspCI	CAANNNNNGTGG	2 cut(s)	589, 624
CviAII	CATG	5 cut(s)	91, 294, 444, 700, 931
CviQI	GTAC	3 cut(s)	204, 245, 396
DdeI	CTNAG	7 cut(s)	318, 426, 531, 633, 727, 1008, 1026
DpnI	GATC	6 cut(s)	12, 290, 520, 675, 873, 920
DpnII	GATC	6 cut(s)	10, 288, 518, 673, 871, 918
DraIII	CACNNNGTG	1 cut(s)	297
EaeI	YGGCCR	2 cut(s)	27, 763
Eam1104I	CTCTTC	4 cut(s)	228, 570, 607, 788
EarI	CTCTTC	4 cut(s)	228, 570, 607, 788
Eco130I	CCWWGG	1 cut(s)	193
Eco32I	GATATC	1 cut(s)	598
Eco88I	CYCGRG	1 cut(s)	977
EcoRII	CCWGG	1 cut(s)	709
EcoRV	GATATC	1 cut(s)	598
EcoT14I	CCWWGG	1 cut(s)	193
ErhI	CCWWGG	1 cut(s)	193
FaeI	CATG	5 cut(s)	94, 297, 447, 703, 934
FalI	AAGNNNNNCTT	4 cut(s)	128, 160, 785, 817
FatI	CATG	5 cut(s)	90, 293, 443, 699, 930
FauI	CCCGC	2 cut(s)	508, 1062
FbaI	TGATCA	1 cut(s)	288
Fnu4HI	GCNGC	1 cut(s)	117
FokI	GGATG	3 cut(s)	571, 675, 1052
Fsp4HI	GCNGC	1 cut(s)	117
FspBI	CTAG	2 cut(s)	587, 843
GlaI	GCGC	1 cut(s)	115
GluI	GCNGC	1 cut(s)	117
HaeII	RGCGCY	1 cut(s)	117
HaeIII	GGCC	2 cut(s)	29, 765
HapII	CCGG	3 cut(s)	224, 492, 822
HgaI	GACGC	1 cut(s)	323
HhaI	GCGC	1 cut(s)	116
Hin1II	CATG	5 cut(s)	94, 297, 447, 703, 934
Hin6I	GCGC	1 cut(s)	114
HinP1I	GCGC	1 cut(s)	114
HinfI	GANTC	6 cut(s)	167, 472, 725, 846, 980, 998
HpaII	CCGG	3 cut(s)	224, 492, 822
HphI	GGTGA	9 cut(s)	9, 53, 272, 353, 367, 380, 751, 895, 916
Hpy166II	GTNNAC	1 cut(s)	375
Hpy188I	TCNGA	5 cut(s)	82, 653, 918, 1003, 1039
Hpy188III	TCNNGA	2 cut(s)	587, 875
Hpy8I	GTNNAC	1 cut(s)	375
HpyAV	CCTTC	8 cut(s)	28, 38, 95, 223, 232, 250, 650, 872
HpyCH4III	ACNGT	3 cut(s)	164, 208, 814
HpyCH4V	TGCA	2 cut(s)	736, 1043
HpyF10VI	GCNNNNNNNGC	3 cut(s)	91, 125, 179
HpyF3I	CTNAG	7 cut(s)	318, 426, 531, 633, 727, 1008, 1026
Hsp92II	CATG	5 cut(s)	94, 297, 447, 703, 934
HspAI	GCGC	1 cut(s)	114
Ksp22I	TGATCA	1 cut(s)	288
Kzo9I	GATC	6 cut(s)	10, 288, 518, 673, 871, 918
LmnI	GCTCC	4 cut(s)	82, 99, 586, 710
Lsp1109I	GCAGC	1 cut(s)	103
LweI	GCATC	2 cut(s)	253, 1030
MaeI	CTAG	2 cut(s)	587, 843
MaeIII	GTNAC	4 cut(s)	104, 722, 739, 824
MalI	GATC	6 cut(s)	12, 290, 520, 675, 873, 920
MboI	GATC	6 cut(s)	10, 288, 518, 673, 871, 918
MflI	RGATCY	1 cut(s)	518
MhlI	GDGCHC	5 cut(s)	77, 707, 772, 978, 1014
MlsI	TGGCCA	1 cut(s)	29
MluCI	AATT	4 cut(s)	157, 213, 568, 864
MluNI	TGGCCA	1 cut(s)	29
MlyI	GAGTC	3 cut(s)	466, 719, 989
MmeI	TCCRAC	5 cut(s)	190, 631, 640, 666, 932
Mox20I	TGGCCA	1 cut(s)	29
MscI	TGGCCA	1 cut(s)	29
MseI	TTAA	1 cut(s)	507
MslI	CAYNNNNRTG	2 cut(s)	552, 929
Msp20I	TGGCCA	1 cut(s)	29
MspI	CCGG	3 cut(s)	224, 492, 822
MspR9I	CCNGG	2 cut(s)	224, 711
MvaI	CCWGG	1 cut(s)	711
MwoI	GCNNNNNNNGC	3 cut(s)	91, 125, 179
NciI	CCSGG	1 cut(s)	224
NdeII	GATC	6 cut(s)	10, 288, 518, 673, 871, 918
NlaIII	CATG	5 cut(s)	94, 297, 447, 703, 934
NlaIV	GGNNCC	3 cut(s)	74, 582, 697
NmeAIII	GCCGAG	1 cut(s)	464
NmuCI	GTSAC	2 cut(s)	722, 739
PaeR7I	CTCGAG	1 cut(s)	977
PaqCI	CACCTGC	1 cut(s)	727
PcsI	WCGNNNNNNNCGW	1 cut(s)	321
PfeI	GAWTC	3 cut(s)	167, 846, 998
PfoI	TCCNGGA	1 cut(s)	222
PkrI	GCNGC	1 cut(s)	118
PleI	GAGTC	3 cut(s)	466, 719, 988
PpsI	GAGTC	3 cut(s)	466, 719, 988
Psp6I	CCWGG	1 cut(s)	709
PspGI	CCWGG	1 cut(s)	709
PspN4I	GGNNCC	3 cut(s)	74, 582, 697
PspXI	VCTCGAGB	1 cut(s)	977
PsuI	RGATCY	1 cut(s)	518
RsaI	GTAC	3 cut(s)	205, 246, 397
RsaNI	GTAC	3 cut(s)	204, 245, 396
RseI	CAYNNNNRTG	2 cut(s)	552, 929
SaqAI	TTAA	1 cut(s)	507
SatI	GCNGC	1 cut(s)	117
Sau3AI	GATC	6 cut(s)	10, 288, 518, 673, 871, 918
SchI	GAGTC	3 cut(s)	466, 719, 989
ScrFI	CCNGG	2 cut(s)	224, 711
SduI	GDGCHC	5 cut(s)	77, 707, 772, 978, 1014
SfaNI	GCATC	2 cut(s)	253, 1030
Sfr274I	CTCGAG	1 cut(s)	977
SlaI	CTCGAG	1 cut(s)	977
SmiMI	CAYNNNNRTG	2 cut(s)	552, 929
SmlI	CTYRAG	2 cut(s)	131, 977
SmoI	CTYRAG	2 cut(s)	131, 977
Sse9I	AATT	4 cut(s)	157, 213, 568, 864
SsiI	CCGC	2 cut(s)	515, 1055
SspMI	CTAG	2 cut(s)	587, 843
StyD4I	CCNGG	2 cut(s)	222, 709
StyI	CCWWGG	1 cut(s)	193
TaaI	ACNGT	3 cut(s)	164, 208, 814
TaqI	TCGA	1 cut(s)	978
TasI	AATT	4 cut(s)	157, 213, 568, 864
TfiI	GAWTC	3 cut(s)	167, 846, 998
Tru1I	TTAA	1 cut(s)	507
Tru9I	TTAA	1 cut(s)	507
TscAI	CASTG	4 cut(s)	255, 397, 418, 766
TseFI	GTSAC	2 cut(s)	722, 739
TseI	GCWGC	1 cut(s)	116
Tsp45I	GTSAC	2 cut(s)	722, 739
TspDTI	ATGAA	1 cut(s)	823
TspGWI	ACGGA	3 cut(s)	86, 705, 1010
TspRI	CASTG	4 cut(s)	255, 397, 418, 766
XbaI	TCTAGA	1 cut(s)	586
XhoI	CTCGAG	1 cut(s)	977
XspI	CTAG	2 cut(s)	587, 843

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.