Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001439

Physical Location & Seq

Genomic Coordinates Forward (+)

22005885 .. 22008106

Gene Structure 2222 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00017950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGGATATTGATCTTGCACCAAAGTTGGCCAAGAAGGTTTATGGAGGAGATGGAGGTTCTTACTTTGCTTGGTGCCCATCGGAGCTTCCCATGCTCCGTGAAGGTAACATCGGCGCTGCCAAGCTCGCCCTTGAGAAGAACGGCTTTGCTCTCCCCAATTACTCTGATTCTGCCAGAGTTGCTTATATCCTCCAAGGAAGTGGTGTTGTTGGAATTGTCCTCCCGGAGAAGGAAGAGAAGGTTCTTCCAGTGAAGAAGGGTGATGCCATTGCCCTCCCTTTCGGAGTTATCACTTGGTGGCACAACAAGGAGGACACTGAGTTTGTAGTTCTTTTCTTGGGTGATACCAAAACAGCTCACAAAAGGGGTGAGTTCACCAACTTCTATCTCACTGGTACTAATGGCATTTTCACTGGTTTCTCAACTGAGTTTGTCGGCCGAGCATGGGATTTGGAGGAGAGTGTTGTGAAGACTCTTGTTGGCAAGCAAAGCGGTCAGGGTATTGTTAAGTTGGGGGCATCAAATTTGCCTGAGCCAAAGAACGAGCATAGAGATGGGATGACGTTGAATTGCGAAGAAGCTCCTCTAGATGTTGATATCAAGGGTGGTGGAAGAGTTGTTGTTTTGAATACTAAGAACCTTCCTTTGGTCGGAGAGGTTGGGCTTGGTGCTGATCTTGTTAGGTTGGACGGAAGTGCCATGTGCTCCCCTGGGTTTTCTTGTGACTCTGCATTGCAGGTGACTTACATTGTTAGAGGCAGTGGCCGTGCCCAAGTTGTTGGTGTTGATGGGAAGAGGGTCTTGGAAACAACCGTCAAAGCTGGTAACTTGTTCATTGTTCCTAGATTCTTTATTGTTTCAAAAATTGCTGATCCAGAAGGCTTGGAATGGTTCTCCATCATCACTACTCCCAATCCGATCTTCACCCACATGGCTGGAAGTATTGGTTGTTGGAAAGCTCTATCTCCGAAGGTGCTCGAGTCTTCTTTCAATGTGGATTCTGATACCGAGCAGCTTTTCCGTTCAAAGAGGACTTCAGATGCAATCTTCTTCCCTCCACCGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

355

Amino Acids

38.35

Weight (kDa)

5.93

Isoelectric Point (pI)

32.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	11 - 156	5e-23	Cupin
Cupin_1	PF00190	198 - 337	4.5e-22	Cupin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001439)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07750 AT2G28680
fragaria_vesca	FvH4_2g37390 FvH4_3g34830 FvH4_3g34840
malus_domestica	MD03G1100900.v1.1 MD11G1115000.v1.1
prunus_persica	Prupe.6G085800_v2.0.a1 Prupe.6G085900_v2.0.a1
pyrus_communis	pycom03g08290 pycom11g09650
rosa_chinensis	RchiOBHm_Chr5g0062671 RchiOBHm_Chr5g0062681 RchiOBHm_Chr6g0304301
rosa_laevigata	RLG00000004146 RLG00000004904 RLG00000010993 RLG00000035570 RLG00000035572
rosa_multiflora	Rmu_sc0006470.1_g000001 Rmu_ssc0000218.1_g000036 Rmu_ssc0000472.1_g000022 Rmu_ssc0000472.1_g000023 Rmu_ssc0000472.1_g000028
rosa_roxburghii	Rroxscaffold_1G00017940 Rroxscaffold_1G00017950 Rroxscaffold_3G00260780 Rroxscaffold_7G00163860
rosa_rugosa	Rorug05G0350900 Rorug05G0351000 Rorug06G0329800 Rorug06G0470100 Rorug06G0493800 Rorug07G0020700
rosa_samantha	Rh5AG411700 Rh5AG411900 Rh5BG425700 Rh5BG425900 Rh5CG449800 Rh5CG450000 Rh5DG439700 Rh5DG439800 Rh6AG443200 Rh6BG459200 Rh6CG456000 Rh6DG442700 Rh7BG075100 Rh7BG100100 Rh7BG148700
rosa_wichuraiana	Rw5G038710 Rw5G038720 Rw6G038460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	727
Acc36I	ACCTGC	1 cut(s)	727
AccB1I	GGYRCC	1 cut(s)	72
AciI	CCGC	1 cut(s)	492
AclWI	GGATC	1 cut(s)	866
AcoI	YGGCCR	3 cut(s)	27, 436, 763
AcsI	RAATTY	1 cut(s)	523
AcuI	CTGAAG	1 cut(s)	1020
AdeI	CACNNNGTG	1 cut(s)	297
AfaI	GTAC	1 cut(s)	397
AfiI	CCNNNNNNNGG	4 cut(s)	229, 445, 646, 650
AgsI	TTSAA	5 cut(s)	568, 628, 861, 991, 1026
AjnI	CCWGG	1 cut(s)	709
AjuI	GAANNNNNNNTTGG	6 cut(s)	629, 661, 785, 817, 905, 937
AleI	CACNNNNGTG	1 cut(s)	1063
AluBI	AGCT	7 cut(s)	85, 124, 356, 581, 821, 959, 1015
AluI	AGCT	7 cut(s)	85, 124, 356, 581, 821, 959, 1015
Alw21I	GWGCWC	2 cut(s)	707, 978
AlwI	GGATC	1 cut(s)	866
Ama87I	CYCGRG	1 cut(s)	977
AoxI	GGCC	3 cut(s)	27, 436, 763
ApeKI	GCWGC	2 cut(s)	116, 1012
ApoI	RAATTY	1 cut(s)	523
ArsI	GACNNNNNNTTYG	2 cut(s)	305, 337
AspLEI	GCGC	1 cut(s)	116
AsuC2I	CCSGG	1 cut(s)	224
AsuHPI	GGTGA	6 cut(s)	272, 353, 367, 380, 751, 916
AvaI	CYCGRG	1 cut(s)	977
BaeGI	GKGCMC	2 cut(s)	77, 772
BalI	TGGCCA	1 cut(s)	29
BanI	GGYRCC	1 cut(s)	72
BbsI	GAAGAC	2 cut(s)	476, 975
Bbv12I	GWGCWC	2 cut(s)	707, 978
BbvI	GCAGC	2 cut(s)	103, 1024
BccI	CCATC	5 cut(s)	44, 85, 548, 782, 905
BceAI	ACGGC	2 cut(s)	157, 750
BciT130I	CCWGG	1 cut(s)	711
BcnI	CCSGG	1 cut(s)	224
BfaI	CTAG	2 cut(s)	587, 843
BfoI	RGCGCY	1 cut(s)	117
BfuAI	ACCTGC	1 cut(s)	727
BisI	GCNGC	2 cut(s)	117, 1013
BlsI	GCNGC	2 cut(s)	118, 1014
Bme1390I	CCNGG	2 cut(s)	224, 711
BmeT110I	CYCGRG	1 cut(s)	977
BmiI	GGNNCC	1 cut(s)	74
BmrFI	CCNGG	2 cut(s)	224, 711
BmsI	GCATC	3 cut(s)	253, 527, 1030
BpiI	GAAGAC	2 cut(s)	476, 975
Bpu10I	CCTNAGC	1 cut(s)	531
BpuEI	CTTGAG	1 cut(s)	152
BpuMI	CCSGG	1 cut(s)	224
BsaBI	GATNNNNATC	1 cut(s)	9
BsaJI	CCNNGG	3 cut(s)	193, 709, 710
Bsc4I	CCNNNNNNNGG	4 cut(s)	229, 445, 646, 650
Bse1I	ACTGG	3 cut(s)	248, 397, 418
Bse3DI	GCAATG	2 cut(s)	267, 731
Bse8I	GATNNNNATC	1 cut(s)	9
BseBI	CCWGG	1 cut(s)	711
BseDI	CCNNGG	3 cut(s)	193, 709, 710
BseGI	GGATG	1 cut(s)	564
BseJI	GATNNNNATC	1 cut(s)	9
BseLI	CCNNNNNNNGG	4 cut(s)	229, 445, 646, 650
BseMI	GCAATG	2 cut(s)	267, 731
BseMII	CTCAG	3 cut(s)	309, 417, 522
BseNI	ACTGG	3 cut(s)	248, 397, 418
BseRI	GAGGAG	3 cut(s)	60, 470, 573
BseSI	GKGCMC	2 cut(s)	77, 772
BseX3I	CGGCCG	1 cut(s)	436
BseXI	GCAGC	2 cut(s)	103, 1024
Bsh1285I	CGRYCG	1 cut(s)	439
BshFI	GGCC	3 cut(s)	29, 438, 765
BshNI	GGYRCC	1 cut(s)	72
BsiEI	CGRYCG	1 cut(s)	439
BsiHKAI	GWGCWC	2 cut(s)	707, 978
BsiHKCI	CYCGRG	1 cut(s)	977
BsiSI	CCGG	1 cut(s)	224
BslI	CCNNNNNNNGG	4 cut(s)	229, 445, 646, 650
BsnI	GGCC	3 cut(s)	29, 438, 765
BsoBI	CYCGRG	1 cut(s)	977
Bsp1286I	GDGCHC	4 cut(s)	77, 707, 772, 978
Bsp143I	GATC	4 cut(s)	10, 673, 871, 918
BspACI	CCGC	1 cut(s)	492
BspANI	GGCC	3 cut(s)	29, 438, 765
BspCNI	CTCAG	3 cut(s)	310, 418, 523
BspLI	GGNNCC	1 cut(s)	74
BspMI	ACCTGC	1 cut(s)	727
BspPI	GGATC	1 cut(s)	866
BspT107I	GGYRCC	1 cut(s)	72
BsrDI	GCAATG	2 cut(s)	267, 731
BsrI	ACTGG	3 cut(s)	248, 397, 418
BssECI	CCNNGG	3 cut(s)	193, 709, 710
BssMI	GATC	4 cut(s)	10, 673, 871, 918
BssT1I	CCWWGG	1 cut(s)	193
Bst2UI	CCWGG	1 cut(s)	711
Bst4CI	ACNGT	1 cut(s)	814
Bst6I	CTCTTC	3 cut(s)	228, 607, 788
BstC8I	GCNNGC	2 cut(s)	126, 485
BstDEI	CTNAG	4 cut(s)	318, 426, 531, 633
BstF5I	GGATG	1 cut(s)	564
BstH2I	RGCGCY	1 cut(s)	117
BstHHI	GCGC	1 cut(s)	116
BstKTI	GATC	4 cut(s)	13, 676, 874, 921
BstMBI	GATC	4 cut(s)	10, 673, 871, 918
BstMCI	CGRYCG	1 cut(s)	439
BstMWI	GCNNNNNNNGC	4 cut(s)	91, 125, 179, 489
BstNI	CCWGG	1 cut(s)	711
BstSCI	CCNGG	2 cut(s)	222, 709
BstSLI	GKGCMC	2 cut(s)	77, 772
BstV1I	GCAGC	2 cut(s)	103, 1024
BstV2I	GAAGAC	2 cut(s)	476, 975
BstXI	CCANNNNNNTGG	3 cut(s)	200, 779, 935
BstZI	CGGCCG	1 cut(s)	436
BsuRI	GGCC	3 cut(s)	29, 438, 765
BtsCI	GGATG	1 cut(s)	564
BtsI	GCAGTG	1 cut(s)	766
BtsIMutI	CAGTG	5 cut(s)	255, 315, 390, 411, 766
BveI	ACCTGC	1 cut(s)	727
Cac8I	GCNNGC	2 cut(s)	126, 485
CfoI	GCGC	1 cut(s)	116
Csp6I	GTAC	1 cut(s)	396
CspCI	CAANNNNNGTGG	2 cut(s)	589, 624
CviAII	CATG	4 cut(s)	91, 444, 700, 931
CviQI	GTAC	1 cut(s)	396
DdeI	CTNAG	4 cut(s)	318, 426, 531, 633
DpnI	GATC	4 cut(s)	12, 675, 873, 920
DpnII	GATC	4 cut(s)	10, 673, 871, 918
DraIII	CACNNNGTG	1 cut(s)	297
EaeI	YGGCCR	3 cut(s)	27, 436, 763
EagI	CGGCCG	1 cut(s)	436
Eam1104I	CTCTTC	3 cut(s)	228, 607, 788
EarI	CTCTTC	3 cut(s)	228, 607, 788
EclXI	CGGCCG	1 cut(s)	436
Eco130I	CCWWGG	1 cut(s)	193
Eco32I	GATATC	1 cut(s)	598
Eco52I	CGGCCG	1 cut(s)	436
Eco57I	CTGAAG	1 cut(s)	1020
Eco88I	CYCGRG	1 cut(s)	977
EcoRII	CCWGG	1 cut(s)	709
EcoRV	GATATC	1 cut(s)	598
EcoT14I	CCWWGG	1 cut(s)	193
ErhI	CCWWGG	1 cut(s)	193
FaeI	CATG	4 cut(s)	94, 447, 703, 934
FaiI	YATR	7 cut(s)	42, 92, 186, 445, 549, 701, 932
FalI	AAGNNNNNCTT	4 cut(s)	128, 160, 785, 817
FatI	CATG	4 cut(s)	90, 443, 699, 930
Fnu4HI	GCNGC	2 cut(s)	117, 1013
FokI	GGATG	1 cut(s)	571
Fsp4HI	GCNGC	2 cut(s)	117, 1013
FspBI	CTAG	2 cut(s)	587, 843
GlaI	GCGC	1 cut(s)	115
GluI	GCNGC	2 cut(s)	117, 1013
HaeII	RGCGCY	1 cut(s)	117
HaeIII	GGCC	3 cut(s)	29, 438, 765
HapII	CCGG	1 cut(s)	224
HhaI	GCGC	1 cut(s)	116
Hin1II	CATG	4 cut(s)	94, 447, 703, 934
Hin6I	GCGC	1 cut(s)	114
HinP1I	GCGC	1 cut(s)	114
HinfI	GANTC	6 cut(s)	167, 472, 725, 846, 980, 998
HpaII	CCGG	1 cut(s)	224
HphI	GGTGA	6 cut(s)	272, 353, 367, 380, 751, 916
Hpy166II	GTNNAC	1 cut(s)	375
Hpy188I	TCNGA	8 cut(s)	82, 166, 284, 653, 918, 969, 1003, 1039
Hpy188III	TCNNGA	2 cut(s)	587, 875
Hpy8I	GTNNAC	1 cut(s)	375
HpyAV	CCTTC	8 cut(s)	28, 95, 223, 232, 250, 650, 872, 964
HpyCH4III	ACNGT	1 cut(s)	814
HpyCH4IV	ACGT	1 cut(s)	563
HpyCH4V	TGCA	4 cut(s)	17, 731, 736, 1043
HpyF10VI	GCNNNNNNNGC	4 cut(s)	91, 125, 179, 489
HpyF3I	CTNAG	4 cut(s)	318, 426, 531, 633
HpySE526I	ACGT	1 cut(s)	563
Hsp92II	CATG	4 cut(s)	94, 447, 703, 934
HspAI	GCGC	1 cut(s)	114
Kzo9I	GATC	4 cut(s)	10, 673, 871, 918
LmnI	GCTCC	4 cut(s)	82, 99, 586, 710
Lsp1109I	GCAGC	2 cut(s)	103, 1024
LweI	GCATC	3 cut(s)	253, 527, 1030
MaeI	CTAG	2 cut(s)	587, 843
MaeII	ACGT	1 cut(s)	563
MaeIII	GTNAC	4 cut(s)	104, 722, 739, 824
MalI	GATC	4 cut(s)	12, 675, 873, 920
MboI	GATC	4 cut(s)	10, 673, 871, 918
MhlI	GDGCHC	4 cut(s)	77, 707, 772, 978
MlsI	TGGCCA	1 cut(s)	29
MluCI	AATT	5 cut(s)	157, 213, 523, 568, 864
MluNI	TGGCCA	1 cut(s)	29
MlyI	GAGTC	3 cut(s)	466, 719, 989
MmeI	TCCRAC	4 cut(s)	190, 631, 666, 932
Mox20I	TGGCCA	1 cut(s)	29
MscI	TGGCCA	1 cut(s)	29
MseI	TTAA	1 cut(s)	507
MslI	CAYNNNNRTG	3 cut(s)	552, 929, 1063
Msp20I	TGGCCA	1 cut(s)	29
MspI	CCGG	1 cut(s)	224
MspR9I	CCNGG	2 cut(s)	224, 711
MvaI	CCWGG	1 cut(s)	711
MwoI	GCNNNNNNNGC	4 cut(s)	91, 125, 179, 489
NciI	CCSGG	1 cut(s)	224
NdeII	GATC	4 cut(s)	10, 673, 871, 918
NlaIII	CATG	4 cut(s)	94, 447, 703, 934
NlaIV	GGNNCC	1 cut(s)	74
NmeAIII	GCCGAG	1 cut(s)	464
NmuCI	GTSAC	2 cut(s)	722, 739
OliI	CACNNNNGTG	1 cut(s)	1063
PaeR7I	CTCGAG	1 cut(s)	977
PaqCI	CACCTGC	1 cut(s)	727
PasI	CCCWGGG	1 cut(s)	710
PfeI	GAWTC	3 cut(s)	167, 846, 998
PfoI	TCCNGGA	1 cut(s)	222
PkrI	GCNGC	2 cut(s)	118, 1014
PleI	GAGTC	3 cut(s)	466, 719, 988
PpsI	GAGTC	3 cut(s)	466, 719, 988
Psp6I	CCWGG	1 cut(s)	709
PspGI	CCWGG	1 cut(s)	709
PspN4I	GGNNCC	1 cut(s)	74
PspXI	VCTCGAGB	1 cut(s)	977
RsaI	GTAC	1 cut(s)	397
RsaNI	GTAC	1 cut(s)	396
RseI	CAYNNNNRTG	3 cut(s)	552, 929, 1063
SaqAI	TTAA	1 cut(s)	507
SatI	GCNGC	2 cut(s)	117, 1013
Sau3AI	GATC	4 cut(s)	10, 673, 871, 918
SchI	GAGTC	3 cut(s)	466, 719, 989
ScrFI	CCNGG	2 cut(s)	224, 711
SduI	GDGCHC	4 cut(s)	77, 707, 772, 978
SfaNI	GCATC	3 cut(s)	253, 527, 1030
Sfr274I	CTCGAG	1 cut(s)	977
SlaI	CTCGAG	1 cut(s)	977
SmiMI	CAYNNNNRTG	3 cut(s)	552, 929, 1063
SmlI	CTYRAG	2 cut(s)	131, 977
SmoI	CTYRAG	2 cut(s)	131, 977
Sse9I	AATT	5 cut(s)	157, 213, 523, 568, 864
SsiI	CCGC	1 cut(s)	492
SspMI	CTAG	2 cut(s)	587, 843
StyD4I	CCNGG	2 cut(s)	222, 709
StyI	CCWWGG	1 cut(s)	193
TaaI	ACNGT	1 cut(s)	814
TaiI	ACGT	1 cut(s)	566
TaqI	TCGA	1 cut(s)	978
TasI	AATT	5 cut(s)	157, 213, 523, 568, 864
TfiI	GAWTC	3 cut(s)	167, 846, 998
Tru1I	TTAA	1 cut(s)	507
Tru9I	TTAA	1 cut(s)	507
TscAI	CASTG	5 cut(s)	255, 322, 397, 418, 766
TseFI	GTSAC	2 cut(s)	722, 739
TseI	GCWGC	2 cut(s)	116, 1012
Tsp45I	GTSAC	2 cut(s)	722, 739
TspDTI	ATGAA	1 cut(s)	823
TspGWI	ACGGA	3 cut(s)	86, 705, 1010
TspRI	CASTG	5 cut(s)	255, 322, 397, 418, 766
XapI	RAATTY	1 cut(s)	523
XbaI	TCTAGA	1 cut(s)	586
XhoI	CTCGAG	1 cut(s)	977
XspI	CTAG	2 cut(s)	587, 843

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.