Rorug07G0020700

Glutelin type-A

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0001439
Physical Location & Seq
Forward (+)
1534820 .. 1535230
411 bp
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UTR
Exon/CDS
Intron
Rorug07G0020700.1

Sequence Viewer

Length: 411 bp
ATGGCTACAAGCTTGGGATATGAGGTAACTGTTGCAGAGGCTGACAAGAACATGTCAAAAATCGCAGAAGTTGTGAATTCTAGTGATGTGCTAATGGGAGTCCATGGAGCTGGCCTAACAAACATTCTTTTCCTTCCTGAACATGCAATTTTCATTCAAATACTTCCCATAGGGGGATTCGAATGGATTGCAGCAAACTACTTCCGAGAGCCTTCAAGAGATATGAATCTGAAGTATTTGGAATACAAGATAAGCAAGGAGGAGAGCATACTGGAAAGTGAACCCCAATTGAATAAAAAAAAAGGATGGGAAGAGTTCAAGTCAAACTTTCTGAAAAGACAGAATGTAAAGCTTGATGTCGATAGGTTTAGGTCGACTTTGTTAGAAGCCCTGGAGCTTCTGCATCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

136

Amino Acids

15.58

Weight (kDa)

5.42

Isoelectric Point (pI)

38.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_61 PF04577 7 - 50 6.9e-06 Glycosyltransferase 61
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 374
AcsI RAATTY 1 cut(s) 76
AcuI CTGAAG 1 cut(s) 251
AfiI CCNNNNNNNGG 1 cut(s) 173
AflIII ACRYGT 1 cut(s) 51
AgsI TTSAA 4 cut(s) 158, 216, 292, 319
AjnI CCWGG 1 cut(s) 390
AluBI AGCT 4 cut(s) 12, 110, 352, 397
AluI AGCT 4 cut(s) 12, 110, 352, 397
AlwNI CAGNNNCTG 1 cut(s) 41
AoxI GGCC 1 cut(s) 112
ApeKI GCWGC 1 cut(s) 191
ApoI RAATTY 1 cut(s) 76
AsuII TTCGAA 1 cut(s) 180
BbvI GCAGC 1 cut(s) 203
BccI CCATC 1 cut(s) 300
BcgI CGANNNNNNTGC 2 cut(s) 170, 204
BciT130I CCWGG 1 cut(s) 392
BfaI CTAG 1 cut(s) 81
BisI GCNGC 1 cut(s) 192
BlsI GCNGC 1 cut(s) 193
Bme1390I CCNGG 1 cut(s) 392
BmrFI CCNGG 1 cut(s) 392
Bpu14I TTCGAA 1 cut(s) 180
BsaBI GATNNNNATC 1 cut(s) 225
BsaJI CCNNGG 2 cut(s) 103, 390
Bsc4I CCNNNNNNNGG 1 cut(s) 173
Bse1I ACTGG 1 cut(s) 276
Bse8I GATNNNNATC 1 cut(s) 225
BseBI CCWGG 1 cut(s) 392
BseDI CCNNGG 2 cut(s) 103, 390
BseGI GGATG 1 cut(s) 311
BseJI GATNNNNATC 1 cut(s) 225
BseLI CCNNNNNNNGG 1 cut(s) 173
BseNI ACTGG 1 cut(s) 276
BseRI GAGGAG 1 cut(s) 275
BseXI GCAGC 1 cut(s) 203
BshFI GGCC 1 cut(s) 114
BslI CCNNNNNNNGG 1 cut(s) 173
BsnI GGCC 1 cut(s) 114
Bsp119I TTCGAA 1 cut(s) 180
Bsp19I CCATGG 1 cut(s) 103
BspANI GGCC 1 cut(s) 114
BspT104I TTCGAA 1 cut(s) 180
BsrI ACTGG 1 cut(s) 276
BssECI CCNNGG 2 cut(s) 103, 390
BssT1I CCWWGG 1 cut(s) 103
Bst2UI CCWGG 1 cut(s) 392
Bst4CI ACNGT 1 cut(s) 31
Bst6I CTCTTC 1 cut(s) 306
BstBI TTCGAA 1 cut(s) 180
BstC8I GCNNGC 1 cut(s) 112
BstDSI CCRYGG 1 cut(s) 103
BstF5I GGATG 1 cut(s) 311
BstNI CCWGG 1 cut(s) 392
BstNSI RCATGY 2 cut(s) 55, 146
BstSCI CCNGG 1 cut(s) 390
BstV1I GCAGC 1 cut(s) 203
BstXI CCANNNNNNTGG 1 cut(s) 110
BsuRI GGCC 1 cut(s) 114
BtgI CCRYGG 1 cut(s) 103
BtsCI GGATG 1 cut(s) 311
Cac8I GCNNGC 1 cut(s) 112
CaiI CAGNNNCTG 1 cut(s) 41
CviAII CATG 3 cut(s) 52, 104, 143
CviJI RGCY 9 cut(s) 5, 12, 41, 110, 114, 211, 352, 389, 397
CviKI_1 RGCY 9 cut(s) 5, 12, 41, 110, 114, 211, 352, 389, 397
Eam1104I CTCTTC 1 cut(s) 306
EarI CTCTTC 1 cut(s) 306
Eco130I CCWWGG 1 cut(s) 103
Eco57I CTGAAG 1 cut(s) 251
EcoRI GAATTC 1 cut(s) 76
EcoRII CCWGG 1 cut(s) 390
EcoT14I CCWWGG 1 cut(s) 103
ErhI CCWWGG 1 cut(s) 103
FaeI CATG 3 cut(s) 55, 107, 146
FaiI YATR 7 cut(s) 21, 53, 105, 144, 170, 224, 269
FalI AAGNNNNNCTT 2 cut(s) 311, 343
FatI CATG 3 cut(s) 51, 103, 142
FblI GTMKAC 1 cut(s) 374
Fnu4HI GCNGC 1 cut(s) 192
FokI GGATG 1 cut(s) 318
Fsp4HI GCNGC 1 cut(s) 192
FspBI CTAG 1 cut(s) 81
GluI GCNGC 1 cut(s) 192
HaeIII GGCC 1 cut(s) 114
Hin1II CATG 3 cut(s) 55, 107, 146
HincII GTYRAC 1 cut(s) 375
HindII GTYRAC 1 cut(s) 375
HindIII AAGCTT 2 cut(s) 10, 350
HinfI GANTC 3 cut(s) 99, 177, 226
Hpy166II GTNNAC 2 cut(s) 281, 375
Hpy188I TCNGA 3 cut(s) 206, 231, 333
Hpy188III TCNNGA 2 cut(s) 137, 216
Hpy8I GTNNAC 2 cut(s) 281, 375
HpyAV CCTTC 2 cut(s) 143, 222
HpyCH4III ACNGT 1 cut(s) 31
HpyCH4V TGCA 4 cut(s) 35, 146, 191, 403
Hsp92II CATG 3 cut(s) 55, 107, 146
LmnI GCTCC 2 cut(s) 107, 394
LpnPI CCDG 5 cut(s) 96, 150, 257, 377, 404
Lsp1109I GCAGC 1 cut(s) 203
MaeI CTAG 1 cut(s) 81
MaeIII GTNAC 1 cut(s) 25
MboII GAAGA 1 cut(s) 323
MfeI CAATTG 1 cut(s) 287
MluCI AATT 3 cut(s) 76, 147, 287
MlyI GAGTC 1 cut(s) 108
MnlI CCTC 3 cut(s) 16, 31, 253
MspR9I CCNGG 1 cut(s) 392
MunI CAATTG 1 cut(s) 287
MvaI CCWGG 1 cut(s) 392
NcoI CCATGG 1 cut(s) 103
NlaIII CATG 3 cut(s) 55, 107, 146
NspI RCATGY 2 cut(s) 55, 146
NspV TTCGAA 1 cut(s) 180
PciI ACATGT 1 cut(s) 51
PfeI GAWTC 2 cut(s) 177, 226
PkrI GCNGC 1 cut(s) 193
PleI GAGTC 1 cut(s) 107
PpsI GAGTC 1 cut(s) 107
PscI ACATGT 1 cut(s) 51
Psp6I CCWGG 1 cut(s) 390
PspGI CCWGG 1 cut(s) 390
PstNI CAGNNNCTG 1 cut(s) 41
SalI GTCGAC 1 cut(s) 373
SatI GCNGC 1 cut(s) 192
SchI GAGTC 1 cut(s) 108
ScrFI CCNGG 1 cut(s) 392
SetI ASST 7 cut(s) 14, 27, 112, 354, 368, 374, 399
SfuI TTCGAA 1 cut(s) 180
Sse9I AATT 3 cut(s) 76, 147, 287
SspMI CTAG 1 cut(s) 81
StyD4I CCNGG 1 cut(s) 390
StyI CCWWGG 1 cut(s) 103
TaaI ACNGT 1 cut(s) 31
TaqI TCGA 3 cut(s) 180, 360, 374
TasI AATT 3 cut(s) 76, 147, 287
TfiI GAWTC 2 cut(s) 177, 226
TseI GCWGC 1 cut(s) 191
TspDTI ATGAA 2 cut(s) 142, 239
XapI RAATTY 1 cut(s) 76
XceI RCATGY 2 cut(s) 55, 146
XmiI GTMKAC 1 cut(s) 374
XspI CTAG 1 cut(s) 81
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.