Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0001439

Physical Location & Seq

Genomic Coordinates Forward (+)

5108770 .. 5109156

Gene Structure 387 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG075100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGTGCTCCCCTGGGATTTCTTGTGACTCTGCATTGCAGGTGACTTACATTGTTAAGGGAAGTGGCCGTGTGCAAGTTGTTGGTGTCGATGGGAAGAGGCTAGGGTCTTGGAAACGACCGTTACAGCCGGCAACTTATTCATCGTTCCTCGATTCTTTATCGTTTCAAAGATTGCTGATCCAGAAGGCCTGGAATGGTTTTCTATCATCACCACTCCCAATCCAATATTCACTCATTTGGCTGGAAGTATTGGTGCTTGGGAGGCGTTATCTCCTCAGGTGCTTGAAGCTTCCTTCAACGTGGATTCAGATACTGAGAAACTCTTCCGATCAAAGAGAACTTTTGATGCAATCTTCTTCCCTCCTTCCAAATGAATCGATGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

128

Amino Acids

14.45

Weight (kDa)

9.78

Isoelectric Point (pI)

58.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001439)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07750 AT2G28680
fragaria_vesca	FvH4_2g37390 FvH4_3g34830 FvH4_3g34840
malus_domestica	MD03G1100900.v1.1 MD11G1115000.v1.1
prunus_persica	Prupe.6G085800_v2.0.a1 Prupe.6G085900_v2.0.a1
pyrus_communis	pycom03g08290 pycom11g09650
rosa_chinensis	RchiOBHm_Chr5g0062671 RchiOBHm_Chr5g0062681 RchiOBHm_Chr6g0304301
rosa_laevigata	RLG00000004146 RLG00000004904 RLG00000010993 RLG00000035570 RLG00000035572
rosa_multiflora	Rmu_sc0006470.1_g000001 Rmu_ssc0000218.1_g000036 Rmu_ssc0000472.1_g000022 Rmu_ssc0000472.1_g000023 Rmu_ssc0000472.1_g000028
rosa_roxburghii	Rroxscaffold_1G00017940 Rroxscaffold_1G00017950 Rroxscaffold_3G00260780 Rroxscaffold_7G00163860
rosa_rugosa	Rorug05G0350900 Rorug05G0351000 Rorug06G0329800 Rorug06G0470100 Rorug06G0493800 Rorug07G0020700
rosa_samantha	Rh5AG411700 Rh5AG411900 Rh5BG425700 Rh5BG425900 Rh5CG449800 Rh5CG450000 Rh5DG439700 Rh5DG439800 Rh6AG443200 Rh6BG459200 Rh6CG456000 Rh6DG442700 Rh7BG075100 Rh7BG100100 Rh7BG148700
rosa_wichuraiana	Rw5G038710 Rw5G038720 Rw6G038460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	28
Acc36I	ACCTGC	1 cut(s)	28
AclWI	GGATC	1 cut(s)	172
AcoI	YGGCCR	1 cut(s)	64
AgsI	TTSAA	3 cut(s)	167, 286, 297
AjnI	CCWGG	2 cut(s)	10, 188
AjuI	GAANNNNNNNTTGG	2 cut(s)	211, 243
AluBI	AGCT	1 cut(s)	289
AluI	AGCT	1 cut(s)	289
Alw21I	GWGCWC	1 cut(s)	8
AlwI	GGATC	1 cut(s)	172
AlwNI	CAGNNNCTG	1 cut(s)	313
AoxI	GGCC	2 cut(s)	64, 186
Asp700I	GAANNNNTTC	1 cut(s)	322
AsuHPI	GGTGA	2 cut(s)	52, 201
AxyI	CCTNAGG	1 cut(s)	275
Bbv12I	GWGCWC	1 cut(s)	8
BccI	CCATC	1 cut(s)	83
BceAI	ACGGC	1 cut(s)	51
BciT130I	CCWGG	2 cut(s)	12, 190
BfaI	CTAG	1 cut(s)	101
BfuAI	ACCTGC	1 cut(s)	28
Bme1390I	CCNGG	2 cut(s)	12, 190
BmrFI	CCNGG	2 cut(s)	12, 190
BmsI	GCATC	1 cut(s)	336
Bsa29I	ATCGAT	1 cut(s)	377
BsaJI	CCNNGG	2 cut(s)	10, 11
Bse118I	RCCGGY	1 cut(s)	127
Bse21I	CCTNAGG	1 cut(s)	275
Bse3DI	GCAATG	1 cut(s)	32
BseBI	CCWGG	2 cut(s)	12, 190
BseCI	ATCGAT	1 cut(s)	377
BseDI	CCNNGG	2 cut(s)	10, 11
BseMI	GCAATG	1 cut(s)	32
BseMII	CTCAG	2 cut(s)	289, 305
BseRI	GAGGAG	1 cut(s)	263
Bsh1285I	CGRYCG	1 cut(s)	119
BshFI	GGCC	2 cut(s)	66, 188
BshVI	ATCGAT	1 cut(s)	377
BsiEI	CGRYCG	1 cut(s)	119
BsiHKAI	GWGCWC	1 cut(s)	8
BsiSI	CCGG	1 cut(s)	128
BsnI	GGCC	2 cut(s)	66, 188
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	2 cut(s)	177, 328
BspANI	GGCC	2 cut(s)	66, 188
BspCNI	CTCAG	2 cut(s)	288, 306
BspDI	ATCGAT	1 cut(s)	377
BspMI	ACCTGC	1 cut(s)	28
BspPI	GGATC	1 cut(s)	172
BsrDI	GCAATG	1 cut(s)	32
BsrFI	RCCGGY	1 cut(s)	127
BssAI	RCCGGY	1 cut(s)	127
BssECI	CCNNGG	2 cut(s)	10, 11
BssMI	GATC	2 cut(s)	177, 328
Bst2UI	CCWGG	2 cut(s)	12, 190
Bst4CI	ACNGT	1 cut(s)	120
Bst6I	CTCTTC	2 cut(s)	89, 328
BstC8I	GCNNGC	1 cut(s)	129
BstDEI	CTNAG	2 cut(s)	275, 314
BstKTI	GATC	2 cut(s)	180, 331
BstMBI	GATC	2 cut(s)	177, 328
BstMCI	CGRYCG	1 cut(s)	119
BstMWI	GCNNNNNNNGC	1 cut(s)	262
BstNI	CCWGG	2 cut(s)	12, 190
BstSCI	CCNGG	2 cut(s)	10, 188
Bsu15I	ATCGAT	1 cut(s)	377
Bsu36I	CCTNAGG	1 cut(s)	275
BsuRI	GGCC	2 cut(s)	66, 188
BsuTUI	ATCGAT	1 cut(s)	377
BveI	ACCTGC	1 cut(s)	28
Cac8I	GCNNGC	1 cut(s)	129
CaiI	CAGNNNCTG	1 cut(s)	313
Cfr10I	RCCGGY	1 cut(s)	127
ClaI	ATCGAT	1 cut(s)	377
CviJI	RGCY	6 cut(s)	66, 100, 127, 188, 241, 289
CviKI_1	RGCY	6 cut(s)	66, 100, 127, 188, 241, 289
DdeI	CTNAG	2 cut(s)	275, 314
DpnI	GATC	2 cut(s)	179, 330
DpnII	GATC	2 cut(s)	177, 328
EaeI	YGGCCR	1 cut(s)	64
Eam1104I	CTCTTC	2 cut(s)	89, 328
EarI	CTCTTC	2 cut(s)	89, 328
Eco147I	AGGCCT	1 cut(s)	188
Eco81I	CCTNAGG	1 cut(s)	275
EcoRII	CCWGG	2 cut(s)	10, 188
FspBI	CTAG	1 cut(s)	101
HaeIII	GGCC	2 cut(s)	66, 188
HapII	CCGG	1 cut(s)	128
HindIII	AAGCTT	1 cut(s)	287
HinfI	GANTC	4 cut(s)	26, 152, 304, 374
HpaII	CCGG	1 cut(s)	128
HphI	GGTGA	2 cut(s)	52, 201
Hpy188I	TCNGA	2 cut(s)	309, 328
Hpy188III	TCNNGA	1 cut(s)	181
HpyAV	CCTTC	3 cut(s)	178, 303, 374
HpyCH4III	ACNGT	1 cut(s)	120
HpyCH4IV	ACGT	1 cut(s)	299
HpyCH4V	TGCA	4 cut(s)	32, 37, 73, 349
HpyF10VI	GCNNNNNNNGC	1 cut(s)	262
HpyF3I	CTNAG	2 cut(s)	275, 314
HpySE526I	ACGT	1 cut(s)	299
KroI	GCCGGC	1 cut(s)	127
KroNI	GCCGGC	1 cut(s)	129
Kzo9I	GATC	2 cut(s)	177, 328
LmnI	GCTCC	1 cut(s)	11
LpnPI	CCDG	8 cut(s)	23, 24, 141, 175, 194, 202, 227, 262
LweI	GCATC	1 cut(s)	336
MaeI	CTAG	1 cut(s)	101
MaeII	ACGT	1 cut(s)	299
MaeIII	GTNAC	3 cut(s)	23, 40, 120
MalI	GATC	2 cut(s)	179, 330
MboI	GATC	2 cut(s)	177, 328
MboII	GAAGA	4 cut(s)	106, 315, 345, 348
MhlI	GDGCHC	1 cut(s)	8
MlyI	GAGTC	1 cut(s)	20
MnlI	CCTC	5 cut(s)	90, 158, 255, 284, 371
MroNI	GCCGGC	1 cut(s)	127
MroXI	GAANNNNTTC	1 cut(s)	322
MseI	TTAA	1 cut(s)	54
MspI	CCGG	1 cut(s)	128
MspR9I	CCNGG	2 cut(s)	12, 190
MvaI	CCWGG	2 cut(s)	12, 190
MwoI	GCNNNNNNNGC	1 cut(s)	262
NaeI	GCCGGC	1 cut(s)	129
NdeII	GATC	2 cut(s)	177, 328
NgoMIV	GCCGGC	1 cut(s)	127
NmuCI	GTSAC	2 cut(s)	23, 40
PaqCI	CACCTGC	1 cut(s)	28
PasI	CCCWGGG	1 cut(s)	11
PceI	AGGCCT	1 cut(s)	188
PdiI	GCCGGC	1 cut(s)	129
PdmI	GAANNNNTTC	1 cut(s)	322
PfeI	GAWTC	3 cut(s)	152, 304, 374
PleI	GAGTC	1 cut(s)	20
PpsI	GAGTC	1 cut(s)	20
Psp6I	CCWGG	2 cut(s)	10, 188
PspGI	CCWGG	2 cut(s)	10, 188
PstNI	CAGNNNCTG	1 cut(s)	313
SaqAI	TTAA	1 cut(s)	54
Sau3AI	GATC	2 cut(s)	177, 328
SchI	GAGTC	1 cut(s)	20
ScrFI	CCNGG	2 cut(s)	12, 190
SduI	GDGCHC	1 cut(s)	8
SetI	ASST	4 cut(s)	42, 281, 291, 302
SfaNI	GCATC	1 cut(s)	336
SseBI	AGGCCT	1 cut(s)	188
SspI	AATATT	1 cut(s)	227
SspMI	CTAG	1 cut(s)	101
StuI	AGGCCT	1 cut(s)	188
StyD4I	CCNGG	2 cut(s)	10, 188
TaaI	ACNGT	1 cut(s)	120
TaiI	ACGT	1 cut(s)	302
TaqI	TCGA	3 cut(s)	87, 150, 377
TfiI	GAWTC	3 cut(s)	152, 304, 374
Tru1I	TTAA	1 cut(s)	54
Tru9I	TTAA	1 cut(s)	54
TseFI	GTSAC	2 cut(s)	23, 40
Tsp45I	GTSAC	2 cut(s)	23, 40
TspDTI	ATGAA	2 cut(s)	129, 387
XmnI	GAANNNNTTC	1 cut(s)	322
XspI	CTAG	1 cut(s)	101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.