Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0001439

Physical Location & Seq

Genomic Coordinates Reverse (-)

7424476 .. 7425826

Gene Structure 1351 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG100100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGGAAATTGATCTTACACCAAGGTTGGCTAAGAAGGTTTATGAAGGAGATGGCGGTTCCTACTCTGCCTGGTCCCCGTCGGAGCTTCCCATGCTCCGTGAAGGTGACATCGGAGCTGCCAAGCTCTCTCTGGAGAAGGACGGCTTTGCTCTCCCCAATTACTCTGACTCTGCCAGAGTTGCCTATGTCCTTCAAGGTAATGGAGTAGTCGGAATTGTTCTGCCAGAGAAGGAAGAAAAGGTTCTTCCAGTAAAGAAGGGTGATGCTATTGCCCTCCCTTTTGGAGTTGTCACTTGGTGGTACAACAAGGAGGACACTGAGTTTGTGGTTCTTTTCTTGGGTGATACCAAAACAGCTCACAAAAGGGGAGAGTTCACTGACTTCTATCTTAATGGTTCTAATGGCATTTTCACCGGCTTCTCAACTGAGTTTGTCAGCCGAGCATGGGATTTGGAGAAGAATGTTGTGAAGACTCTTGTTGGCAAGCAAACCGGCAAGGGCATTGTTAAGTTGGGGGGAACCAATTTGCCTGAGCCAAACAAAGAACATAGAGATGGGATGACATTGAATTGCGAAGAGGCTCCTCTTGATGTTGACATTAAAGGCGGTGGAAGAGTTGTTGTTTTGAATACTAAGAACCTTCCTTTGGTCGGAGAAGTTGGGCTTGGTGCTGATCTTGTTAGGTTGGACGGAAGTGCTATGTGCTCCCCTGGGTTTTCTTGTGACTCTGCGTTGCAGGTGACCTATATTGTTAGGGGCAGTGGTCGTGTCCAAGTTGTTGGTGTCGATGGGAAGAGGGTCTTGGAAACTACTGTTACAGCTGGCAAATTGTTCATCGTTCCTCGATTCTTTGTTGTTTCAAAGATTGCTGATCCGGAAGGCTTGGAATGGTTCTCCATCATCACTACTCCCAATCCAATATTCACTCATTTGGCTGGAAGTATTGGTGCTTGGAAGGCGTTATCTCCTCAGGTGCTTGAGGCTTCATTCAACGTGGATTCCGATACGGAGAAGCTCTTCCGATCAAAAAGAACTTCTGATGCAATTTTCTTCCCTCCTCCCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

355

Amino Acids

38.46

Weight (kDa)

5.63

Isoelectric Point (pI)

26.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	11 - 157	2.4e-24	Cupin
Cupin_1	PF00190	198 - 337	3.7e-23	Cupin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001439)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07750 AT2G28680
fragaria_vesca	FvH4_2g37390 FvH4_3g34830 FvH4_3g34840
malus_domestica	MD03G1100900.v1.1 MD11G1115000.v1.1
prunus_persica	Prupe.6G085800_v2.0.a1 Prupe.6G085900_v2.0.a1
pyrus_communis	pycom03g08290 pycom11g09650
rosa_chinensis	RchiOBHm_Chr5g0062671 RchiOBHm_Chr5g0062681 RchiOBHm_Chr6g0304301
rosa_laevigata	RLG00000004146 RLG00000004904 RLG00000010993 RLG00000035570 RLG00000035572
rosa_multiflora	Rmu_sc0006470.1_g000001 Rmu_ssc0000218.1_g000036 Rmu_ssc0000472.1_g000022 Rmu_ssc0000472.1_g000023 Rmu_ssc0000472.1_g000028
rosa_roxburghii	Rroxscaffold_1G00017940 Rroxscaffold_1G00017950 Rroxscaffold_3G00260780 Rroxscaffold_7G00163860
rosa_rugosa	Rorug05G0350900 Rorug05G0351000 Rorug06G0329800 Rorug06G0470100 Rorug06G0493800 Rorug07G0020700
rosa_samantha	Rh5AG411700 Rh5AG411900 Rh5BG425700 Rh5BG425900 Rh5CG449800 Rh5CG450000 Rh5DG439700 Rh5DG439800 Rh6AG443200 Rh6BG459200 Rh6CG456000 Rh6DG442700 Rh7BG075100 Rh7BG100100 Rh7BG148700
rosa_wichuraiana	Rw5G038710 Rw5G038720 Rw6G038460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	727
Acc36I	ACCTGC	1 cut(s)	727
AccIII	TCCGGA	1 cut(s)	874
AciI	CCGC	2 cut(s)	54, 606
AclWI	GGATC	1 cut(s)	866
AdeI	CACNNNGTG	1 cut(s)	297
AfaI	GTAC	1 cut(s)	302
AfiI	CCNNNNNNNGG	3 cut(s)	445, 646, 650
AgsI	TTSAA	5 cut(s)	194, 568, 628, 861, 991
AjnI	CCWGG	2 cut(s)	68, 709
AjuI	GAANNNNNNNTTGG	8 cut(s)	629, 648, 661, 680, 785, 817, 905, 937
AluBI	AGCT	6 cut(s)	85, 116, 124, 356, 821, 1015
AluI	AGCT	6 cut(s)	85, 116, 124, 356, 821, 1015
Alw21I	GWGCWC	1 cut(s)	707
AlwI	GGATC	1 cut(s)	866
Aor13HI	TCCGGA	1 cut(s)	874
ApeKI	GCWGC	1 cut(s)	116
ArsI	GACNNNNNNTTYG	2 cut(s)	305, 337
Asp700I	GAANNNNTTC	2 cut(s)	240, 1016
AspS9I	GGNCC	1 cut(s)	72
AsuHPI	GGTGA	5 cut(s)	116, 272, 353, 403, 751
AvaII	GGWCC	1 cut(s)	72
AxyI	CCTNAGG	1 cut(s)	969
BbsI	GAAGAC	1 cut(s)	476
Bbv12I	GWGCWC	1 cut(s)	707
BbvI	GCAGC	1 cut(s)	103
BccI	CCATC	4 cut(s)	44, 548, 782, 905
BceAI	ACGGC	1 cut(s)	157
BciT130I	CCWGG	2 cut(s)	70, 711
BfuAI	ACCTGC	1 cut(s)	727
BisI	GCNGC	1 cut(s)	117
BlsI	GCNGC	1 cut(s)	118
Bme1390I	CCNGG	2 cut(s)	70, 711
Bme18I	GGWCC	1 cut(s)	72
BmgT120I	GGNCC	1 cut(s)	72
BmiI	GGNNCC	4 cut(s)	58, 74, 520, 582
BmrFI	CCNGG	2 cut(s)	70, 711
BmsI	GCATC	2 cut(s)	253, 1030
BpiI	GAAGAC	1 cut(s)	476
BpmI	CTGGAG	1 cut(s)	152
Bpu10I	CCTNAGC	1 cut(s)	531
BpuEI	CTTGAG	1 cut(s)	998
BsaJI	CCNNGG	3 cut(s)	20, 709, 710
BsaWI	WCCGGW	1 cut(s)	874
Bsc4I	CCNNNNNNNGG	3 cut(s)	445, 646, 650
Bse118I	RCCGGY	2 cut(s)	413, 491
Bse1I	ACTGG	1 cut(s)	248
Bse21I	CCTNAGG	1 cut(s)	969
BseAI	TCCGGA	1 cut(s)	874
BseBI	CCWGG	2 cut(s)	70, 711
BseDI	CCNNGG	3 cut(s)	20, 709, 710
BseGI	GGATG	1 cut(s)	564
BseLI	CCNNNNNNNGG	3 cut(s)	445, 646, 650
BseMII	CTCAG	4 cut(s)	309, 417, 522, 983
BseNI	ACTGG	1 cut(s)	248
BseRI	GAGGAG	3 cut(s)	573, 957, 1047
BseXI	GCAGC	1 cut(s)	103
BsiHKAI	GWGCWC	1 cut(s)	707
BsiSI	CCGG	3 cut(s)	414, 492, 875
BslFI	GGGAC	1 cut(s)	58
BslI	CCNNNNNNNGG	3 cut(s)	445, 646, 650
BsmFI	GGGAC	1 cut(s)	58
Bsp1286I	GDGCHC	1 cut(s)	707
Bsp13I	TCCGGA	1 cut(s)	874
Bsp143I	GATC	4 cut(s)	10, 673, 871, 1022
BspACI	CCGC	2 cut(s)	54, 606
BspCNI	CTCAG	4 cut(s)	310, 418, 523, 982
BspEI	TCCGGA	1 cut(s)	874
BspLI	GGNNCC	4 cut(s)	58, 74, 520, 582
BspMI	ACCTGC	1 cut(s)	727
BspPI	GGATC	1 cut(s)	866
BspQI	GCTCTTC	1 cut(s)	1022
BsrFI	RCCGGY	2 cut(s)	413, 491
BsrI	ACTGG	1 cut(s)	248
BssAI	RCCGGY	2 cut(s)	413, 491
BssECI	CCNNGG	3 cut(s)	20, 709, 710
BssMI	GATC	4 cut(s)	10, 673, 871, 1022
BssT1I	CCWWGG	1 cut(s)	20
Bst2UI	CCWGG	2 cut(s)	70, 711
Bst4CI	ACNGT	1 cut(s)	814
Bst6I	CTCTTC	4 cut(s)	570, 607, 788, 1022
BstC8I	GCNNGC	2 cut(s)	485, 823
BstDEI	CTNAG	6 cut(s)	30, 318, 426, 531, 633, 969
BstEII	GGTNACC	1 cut(s)	739
BstF5I	GGATG	1 cut(s)	564
BstKTI	GATC	4 cut(s)	13, 676, 874, 1025
BstMBI	GATC	4 cut(s)	10, 673, 871, 1022
BstMWI	GCNNNNNNNGC	3 cut(s)	91, 179, 956
BstNI	CCWGG	2 cut(s)	70, 711
BstPI	GGTNACC	1 cut(s)	739
BstSCI	CCNGG	2 cut(s)	68, 709
BstV1I	GCAGC	1 cut(s)	103
BstV2I	GAAGAC	1 cut(s)	476
BstXI	CCANNNNNNTGG	1 cut(s)	779
Bsu36I	CCTNAGG	1 cut(s)	969
BtsCI	GGATG	1 cut(s)	564
BtsI	GCAGTG	1 cut(s)	766
BtsIMutI	CAGTG	3 cut(s)	315, 375, 766
BveI	ACCTGC	1 cut(s)	727
Cac8I	GCNNGC	2 cut(s)	485, 823
Cfr10I	RCCGGY	2 cut(s)	413, 491
Cfr13I	GGNCC	1 cut(s)	72
Csp6I	GTAC	1 cut(s)	301
CviAII	CATG	2 cut(s)	91, 444
CviQI	GTAC	1 cut(s)	301
DdeI	CTNAG	6 cut(s)	30, 318, 426, 531, 633, 969
DpnI	GATC	4 cut(s)	12, 675, 873, 1024
DpnII	GATC	4 cut(s)	10, 673, 871, 1022
DraIII	CACNNNGTG	1 cut(s)	297
Eam1104I	CTCTTC	4 cut(s)	570, 607, 788, 1022
EarI	CTCTTC	4 cut(s)	570, 607, 788, 1022
Eco130I	CCWWGG	1 cut(s)	20
Eco47I	GGWCC	1 cut(s)	72
Eco81I	CCTNAGG	1 cut(s)	969
Eco91I	GGTNACC	1 cut(s)	739
EcoO65I	GGTNACC	1 cut(s)	739
EcoRII	CCWGG	2 cut(s)	68, 709
EcoT14I	CCWWGG	1 cut(s)	20
ErhI	CCWWGG	1 cut(s)	20
FaeI	CATG	2 cut(s)	94, 447
FaiI	YATR	7 cut(s)	42, 92, 186, 445, 549, 701, 747
FalI	AAGNNNNNCTT	6 cut(s)	128, 160, 648, 680, 785, 817
FaqI	GGGAC	1 cut(s)	58
FatI	CATG	2 cut(s)	90, 443
Fnu4HI	GCNGC	1 cut(s)	117
FokI	GGATG	1 cut(s)	571
Fsp4HI	GCNGC	1 cut(s)	117
GluI	GCNGC	1 cut(s)	117
GsuI	CTGGAG	1 cut(s)	152
HapII	CCGG	3 cut(s)	414, 492, 875
Hin1II	CATG	2 cut(s)	94, 447
HincII	GTYRAC	1 cut(s)	595
HindII	GTYRAC	1 cut(s)	595
HinfI	GANTC	5 cut(s)	167, 472, 725, 846, 998
HpaII	CCGG	3 cut(s)	414, 492, 875
HphI	GGTGA	5 cut(s)	116, 272, 353, 403, 751
Hpy166II	GTNNAC	2 cut(s)	375, 595
Hpy188I	TCNGA	8 cut(s)	82, 113, 166, 212, 653, 1003, 1022, 1039
Hpy188III	TCNNGA	3 cut(s)	131, 587, 875
Hpy8I	GTNNAC	2 cut(s)	375, 595
Hpy99I	CGWCG	1 cut(s)	82
HpyCH4III	ACNGT	1 cut(s)	814
HpyCH4IV	ACGT	1 cut(s)	993
HpyCH4V	TGCA	2 cut(s)	736, 1043
HpyF10VI	GCNNNNNNNGC	3 cut(s)	91, 179, 956
HpyF3I	CTNAG	6 cut(s)	30, 318, 426, 531, 633, 969
HpySE526I	ACGT	1 cut(s)	993
Hsp92II	CATG	2 cut(s)	94, 447
Kpn2I	TCCGGA	1 cut(s)	874
Kzo9I	GATC	4 cut(s)	10, 673, 871, 1022
LguI	GCTCTTC	1 cut(s)	1022
LmnI	GCTCC	5 cut(s)	82, 99, 113, 586, 710
Lsp1109I	GCAGC	1 cut(s)	103
LweI	GCATC	2 cut(s)	253, 1030
MaeII	ACGT	1 cut(s)	993
MaeIII	GTNAC	5 cut(s)	104, 289, 722, 739, 814
MalI	GATC	4 cut(s)	12, 675, 873, 1024
MboI	GATC	4 cut(s)	10, 673, 871, 1022
MboII	GAAGA	9 cut(s)	236, 245, 469, 481, 587, 624, 805, 1009, 1042
MhlI	GDGCHC	1 cut(s)	707
MluCI	AATT	7 cut(s)	6, 157, 213, 523, 568, 827, 1044
MlyI	GAGTC	3 cut(s)	161, 466, 719
MmeI	TCCRAC	4 cut(s)	60, 190, 631, 666
MroI	TCCGGA	1 cut(s)	874
MroXI	GAANNNNTTC	2 cut(s)	240, 1016
MseI	TTAA	3 cut(s)	390, 507, 600
MslI	CAYNNNNRTG	1 cut(s)	552
MspA1I	CMGCKG	1 cut(s)	821
MspI	CCGG	3 cut(s)	414, 492, 875
MspR9I	CCNGG	2 cut(s)	70, 711
MvaI	CCWGG	2 cut(s)	70, 711
MwoI	GCNNNNNNNGC	3 cut(s)	91, 179, 956
NdeII	GATC	4 cut(s)	10, 673, 871, 1022
NlaIII	CATG	2 cut(s)	94, 447
NlaIV	GGNNCC	4 cut(s)	58, 74, 520, 582
NmeAIII	GCCGAG	1 cut(s)	464
NmuCI	GTSAC	4 cut(s)	104, 289, 722, 739
PaqCI	CACCTGC	1 cut(s)	727
PasI	CCCWGGG	1 cut(s)	710
PciSI	GCTCTTC	1 cut(s)	1022
PcsI	WCGNNNNNNNCGW	1 cut(s)	999
PdmI	GAANNNNTTC	2 cut(s)	240, 1016
PfeI	GAWTC	2 cut(s)	846, 998
PkrI	GCNGC	1 cut(s)	118
PleI	GAGTC	3 cut(s)	161, 466, 719
PpsI	GAGTC	3 cut(s)	161, 466, 719
Psp6I	CCWGG	2 cut(s)	68, 709
PspEI	GGTNACC	1 cut(s)	739
PspGI	CCWGG	2 cut(s)	68, 709
PspN4I	GGNNCC	4 cut(s)	58, 74, 520, 582
PspPI	GGNCC	1 cut(s)	72
PvuII	CAGCTG	1 cut(s)	821
RsaI	GTAC	1 cut(s)	302
RsaNI	GTAC	1 cut(s)	301
RseI	CAYNNNNRTG	1 cut(s)	552
SapI	GCTCTTC	1 cut(s)	1022
SaqAI	TTAA	3 cut(s)	390, 507, 600
SatI	GCNGC	1 cut(s)	117
Sau3AI	GATC	4 cut(s)	10, 673, 871, 1022
Sau96I	GGNCC	1 cut(s)	72
SchI	GAGTC	3 cut(s)	161, 466, 719
ScrFI	CCNGG	2 cut(s)	70, 711
SduI	GDGCHC	1 cut(s)	707
SfaNI	GCATC	2 cut(s)	253, 1030
SinI	GGWCC	1 cut(s)	72
SmiMI	CAYNNNNRTG	1 cut(s)	552
SmlI	CTYRAG	1 cut(s)	977
SmoI	CTYRAG	1 cut(s)	977
Sse9I	AATT	7 cut(s)	6, 157, 213, 523, 568, 827, 1044
SsiI	CCGC	2 cut(s)	54, 606
SspI	AATATT	1 cut(s)	921
StyD4I	CCNGG	2 cut(s)	68, 709
StyI	CCWWGG	1 cut(s)	20
TaaI	ACNGT	1 cut(s)	814
TaiI	ACGT	1 cut(s)	996
TaqI	TCGA	2 cut(s)	786, 844
TasI	AATT	7 cut(s)	6, 157, 213, 523, 568, 827, 1044
TfiI	GAWTC	2 cut(s)	846, 998
Tru1I	TTAA	3 cut(s)	390, 507, 600
Tru9I	TTAA	3 cut(s)	390, 507, 600
TscAI	CASTG	3 cut(s)	322, 382, 766
TseFI	GTSAC	4 cut(s)	104, 289, 722, 739
TseI	GCWGC	1 cut(s)	116
Tsp45I	GTSAC	4 cut(s)	104, 289, 722, 739
TspDTI	ATGAA	3 cut(s)	57, 823, 975
TspGWI	ACGGA	3 cut(s)	86, 705, 1022
TspRI	CASTG	3 cut(s)	322, 382, 766
VpaK11BI	GGWCC	1 cut(s)	72
XcmI	CCANNNNNNNNNTGG	1 cut(s)	127
XmnI	GAANNNNTTC	2 cut(s)	240, 1016

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.