Rorug06G0493800

Glutelin type-A

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0001439
Physical Location & Seq
Forward (+)
61094678 .. 61098748
4071 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0493800.1

Sequence Viewer

Length: 1053 bp
ATGGGGGATTCTAGTGGTGATTCAGTGTCGGTGGATATGGAGGGGGTTTCTCTCTGCGGAAAGGAGCATCTTGTACAAACTTGTCATGGTTATGTGTCCGTTGCCGTGTTGGGAGATCAGGACAAACCAGCTCTCGTCACTTACCCCGATTTGGCTTTAAATCATATGTCCTGCTTTCAAGGATTATTCTTTTGTCCAGAAGCGTGTTCCTTGCTGCTCCACAACTTTTGCATATACCATATTAGTCCTCCCGGCCACGAGTTTGGAGCGTCTTCGATCAGCCTTGATGATCCTGTGTATTCAACTGATGATTTAGTAGATCAGATTGCTGAGGTTCTCAACTTTTTTGGACTTGGTGCAGTGATGTGCATGGGGGTCACAGCTGGAGCTTACATTCTTACCCAATTTGCTATGAAATATAGATCCCGTGTCATGGGGTTGATACTTGTTTCTCCGATATGCAAAGCACCCTGCTGGACAGAATGGTTGTATAATAAGGTGATGTCAAATTTACTTTACTACTATGGCATGTGTGGTGTGGTAAAGGAGATATTGCTTAAGCGCTACTTCAGCAAGGAAGTTCGTGGTGGCGTTCAAGTACCAGAATCAGATATAGTTCAGGCATGCAGAAGATCGCTTGATGAAAGGCGGAGTTCAAATGTTTGGCGCTTTCTTGAAGCAATTAATGGGAGACCTGACATTTCTGATGGATTGCGTAAGCTACAATGTCGTTCACTAATATTTGTGGGCGAGAGCTCTTCCTTTCACTCAGAAGCTCTCTACATGACATCAAAATTAGATGGGCGATATAGTGCCTTGGTTGAGGTTCAGGCATGTGGATCAATGGTGACAGAGGAGCAGCCTCATGCAATGTTGATACCATTAGAGTACTTCCTCATGGGTTATGGCTTATACAGGCCTTCTCAGTCAAATGTCAGCCCAAGAAGCCCCTTGAGTCCGTCCTGCATTGCACCAGAGCTTCTTTCACCAGAAAGCATGGGATTGAAGTTGAAACCGATAAAGACTCGGATTCCTCATGATAGAAGTAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

350

Amino Acids

38.77

Weight (kDa)

5.86

Isoelectric Point (pI)

56.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ndr PF03096 22 - 306 1.3e-108 Ndr family
Abhydrolase_1 PF00561 71 - 198 1.2e-08 alpha/beta hydrolase fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 57, 649
AclWI GGATC 3 cut(s) 284, 417, 847
AcoI YGGCCR 1 cut(s) 253
AcsI RAATTY 1 cut(s) 508
AcuI CTGAAG 1 cut(s) 553
AfaI GTAC 3 cut(s) 75, 600, 890
AfeI AGCGCT 1 cut(s) 563
AfiI CCNNNNNNNGG 2 cut(s) 151, 433
AflII CTTAAG 1 cut(s) 557
AgsI TTSAA 7 cut(s) 179, 303, 596, 657, 677, 1006, 1012
AluBI AGCT 7 cut(s) 131, 383, 389, 721, 756, 776, 979
AluI AGCT 7 cut(s) 131, 383, 389, 721, 756, 776, 979
Alw21I GWGCWC 1 cut(s) 758
Alw26I GTCTC 1 cut(s) 685
AlwI GGATC 3 cut(s) 284, 417, 847
Aor51HI AGCGCT 1 cut(s) 563
AoxI GGCC 2 cut(s) 253, 917
ApeKI GCWGC 2 cut(s) 214, 859
ApoI RAATTY 1 cut(s) 508
AseI ATTAAT 1 cut(s) 684
AspLEI GCGC 2 cut(s) 564, 669
AsuC2I CCSGG 1 cut(s) 252
AsuHPI GGTGA 4 cut(s) 29, 511, 859, 978
BanII GRGCYC 1 cut(s) 758
BauI CACGAG 1 cut(s) 257
BbsI GAAGAC 1 cut(s) 264
Bbv12I GWGCWC 1 cut(s) 758
BbvCI CCTCAGC 1 cut(s) 330
BbvI GCAGC 2 cut(s) 201, 871
BccI CCATC 2 cut(s) 701, 794
BceAI ACGGC 1 cut(s) 89
BcnI CCSGG 1 cut(s) 252
BcoDI GTCTC 1 cut(s) 685
BfaI CTAG 1 cut(s) 12
BfoI RGCGCY 2 cut(s) 565, 670
BfrI CTTAAG 1 cut(s) 557
BisI GCNGC 2 cut(s) 215, 860
BlsI GCNGC 2 cut(s) 216, 861
BmcAI AGTACT 1 cut(s) 890
Bme1390I CCNGG 1 cut(s) 252
BmrFI CCNGG 1 cut(s) 252
BmsI GCATC 1 cut(s) 76
BpiI GAAGAC 1 cut(s) 264
BpmI CTGGAG 1 cut(s) 405
Bpu10I CCTNAGC 1 cut(s) 330
BpuEI CTTGAG 1 cut(s) 973
BpuMI CCSGG 1 cut(s) 252
BsaI GGTCTC 1 cut(s) 685
BsaJI CCNNGG 1 cut(s) 816
Bsc4I CCNNNNNNNGG 2 cut(s) 151, 433
Bse3DI GCAATG 2 cut(s) 876, 966
BseDI CCNNGG 1 cut(s) 816
BseLI CCNNNNNNNGG 2 cut(s) 151, 433
BseMI GCAATG 2 cut(s) 876, 966
BseMII CTCAG 3 cut(s) 321, 783, 938
BseRI GAGGAG 1 cut(s) 869
BseXI GCAGC 2 cut(s) 201, 871
BsgI GTGCAG 1 cut(s) 378
BshFI GGCC 2 cut(s) 255, 919
BsiHKAI GWGCWC 1 cut(s) 758
BsiSI CCGG 1 cut(s) 252
BslI CCNNNNNNNGG 2 cut(s) 151, 433
BsmAI GTCTC 1 cut(s) 685
BsnI GGCC 2 cut(s) 255, 919
Bso31I GGTCTC 1 cut(s) 685
Bsp1286I GDGCHC 1 cut(s) 758
Bsp1407I TGTACA 1 cut(s) 73
Bsp143I GATC 7 cut(s) 115, 276, 289, 319, 422, 632, 839
BspACI CCGC 2 cut(s) 57, 649
BspANI GGCC 2 cut(s) 255, 919
BspCNI CTCAG 3 cut(s) 322, 782, 937
BspHI TCATGA 1 cut(s) 1036
BspPI GGATC 3 cut(s) 284, 417, 847
BspQI GCTCTTC 1 cut(s) 763
BspTI CTTAAG 1 cut(s) 557
BspTNI GGTCTC 1 cut(s) 685
BsrDI GCAATG 2 cut(s) 876, 966
BsrGI TGTACA 1 cut(s) 73
BssECI CCNNGG 1 cut(s) 816
BssMI GATC 7 cut(s) 115, 276, 289, 319, 422, 632, 839
BssSI CACGAG 1 cut(s) 257
BssT1I CCWWGG 1 cut(s) 816
Bst2BI CACGAG 1 cut(s) 257
Bst6I CTCTTC 1 cut(s) 763
BstAFI CTTAAG 1 cut(s) 557
BstAUI TGTACA 1 cut(s) 73
BstC8I GCNNGC 1 cut(s) 625
BstDEI CTNAG 3 cut(s) 330, 769, 924
BstH2I RGCGCY 2 cut(s) 565, 670
BstHHI GCGC 2 cut(s) 564, 669
BstKTI GATC 7 cut(s) 118, 279, 292, 322, 425, 635, 842
BstMAI GTCTC 1 cut(s) 685
BstMBI GATC 7 cut(s) 115, 276, 289, 319, 422, 632, 839
BstMWI GCNNNNNNNGC 2 cut(s) 570, 945
BstNSI RCATGY 3 cut(s) 532, 627, 837
BstSCI CCNGG 1 cut(s) 250
BstV1I GCAGC 2 cut(s) 201, 871
BstV2I GAAGAC 1 cut(s) 264
BstX2I RGATCY 1 cut(s) 422
BstXI CCANNNNNNTGG 1 cut(s) 263
BstYI RGATCY 1 cut(s) 422
BsuRI GGCC 2 cut(s) 255, 919
BtsI GCAGTG 1 cut(s) 366
BtsIMutI CAGTG 2 cut(s) 30, 366
Cac8I GCNNGC 1 cut(s) 625
CciI TCATGA 1 cut(s) 1036
CfoI GCGC 2 cut(s) 564, 669
CseI GACGC 1 cut(s) 258
Csp6I GTAC 3 cut(s) 74, 599, 889
CspCI CAANNNNNGTGG 2 cut(s) 209, 244
CviQI GTAC 3 cut(s) 74, 599, 889
DdeI CTNAG 3 cut(s) 330, 769, 924
DpnI GATC 7 cut(s) 117, 278, 291, 321, 424, 634, 841
DpnII GATC 7 cut(s) 115, 276, 289, 319, 422, 632, 839
DraI TTTAAA 1 cut(s) 159
EaeI YGGCCR 1 cut(s) 253
Eam1104I CTCTTC 1 cut(s) 763
EarI CTCTTC 1 cut(s) 763
EciI GGCGGA 1 cut(s) 664
Ecl136II GAGCTC 1 cut(s) 756
Eco130I CCWWGG 1 cut(s) 816
Eco147I AGGCCT 1 cut(s) 919
Eco24I GRGCYC 1 cut(s) 758
Eco31I GGTCTC 1 cut(s) 685
Eco47III AGCGCT 1 cut(s) 563
Eco53kI GAGCTC 1 cut(s) 756
Eco57I CTGAAG 1 cut(s) 553
EcoICRI GAGCTC 1 cut(s) 756
EcoT14I CCWWGG 1 cut(s) 816
EcoT38I GRGCYC 1 cut(s) 758
ErhI CCWWGG 1 cut(s) 816
FalI AAGNNNNNCTT 2 cut(s) 551, 583
FauNDI CATATG 1 cut(s) 165
Fnu4HI GCNGC 2 cut(s) 215, 860
FriOI GRGCYC 1 cut(s) 758
Fsp4HI GCNGC 2 cut(s) 215, 860
FspBI CTAG 1 cut(s) 12
GlaI GCGC 2 cut(s) 563, 668
GluI GCNGC 2 cut(s) 215, 860
GsuI CTGGAG 1 cut(s) 405
HaeII RGCGCY 2 cut(s) 565, 670
HaeIII GGCC 2 cut(s) 255, 919
HapII CCGG 1 cut(s) 252
HgaI GACGC 1 cut(s) 258
HhaI GCGC 2 cut(s) 564, 669
Hin6I GCGC 2 cut(s) 562, 667
HinP1I GCGC 2 cut(s) 562, 667
HinfI GANTC 6 cut(s) 8, 20, 605, 955, 1024, 1030
HpaII CCGG 1 cut(s) 252
HphI GGTGA 4 cut(s) 29, 511, 859, 978
Hpy166II GTNNAC 1 cut(s) 734
Hpy188I TCNGA 6 cut(s) 324, 456, 610, 706, 772, 1029
Hpy188III TCNNGA 4 cut(s) 119, 197, 674, 1037
Hpy8I GTNNAC 1 cut(s) 734
HpyAV CCTTC 1 cut(s) 930
HpyCH4V TGCA 8 cut(s) 231, 359, 369, 462, 627, 869, 966, 971
HpyF10VI GCNNNNNNNGC 2 cut(s) 570, 945
HpyF3I CTNAG 3 cut(s) 330, 769, 924
HspAI GCGC 2 cut(s) 562, 667
Kzo9I GATC 7 cut(s) 115, 276, 289, 319, 422, 632, 839
LguI GCTCTTC 1 cut(s) 763
LmnI GCTCC 5 cut(s) 64, 222, 266, 386, 856
Lsp1109I GCAGC 2 cut(s) 201, 871
LweI GCATC 1 cut(s) 76
MaeI CTAG 1 cut(s) 12
MaeIII GTNAC 3 cut(s) 136, 376, 847
MalI GATC 7 cut(s) 117, 278, 291, 321, 424, 634, 841
MboI GATC 7 cut(s) 115, 276, 289, 319, 422, 632, 839
MboII GAAGA 3 cut(s) 264, 642, 750
MflI RGATCY 1 cut(s) 422
MhlI GDGCHC 1 cut(s) 758
MluCI AATT 4 cut(s) 404, 508, 681, 794
MlyI GAGTC 2 cut(s) 964, 1018
MnlI CCTC 8 cut(s) 34, 258, 325, 817, 847, 873, 905, 1044
MseI TTAA 3 cut(s) 158, 558, 684
MslI CAYNNNNRTG 1 cut(s) 90
MspA1I CMGCKG 1 cut(s) 383
MspCI CTTAAG 1 cut(s) 557
MspI CCGG 1 cut(s) 252
MspR9I CCNGG 1 cut(s) 252
MwoI GCNNNNNNNGC 2 cut(s) 570, 945
NciI CCSGG 1 cut(s) 252
NdeI CATATG 1 cut(s) 165
NdeII GATC 7 cut(s) 115, 276, 289, 319, 422, 632, 839
NmuCI GTSAC 3 cut(s) 136, 376, 847
NspI RCATGY 3 cut(s) 532, 627, 837
PaeI GCATGC 1 cut(s) 627
PagI TCATGA 1 cut(s) 1036
PceI AGGCCT 1 cut(s) 919
PciSI GCTCTTC 1 cut(s) 763
PfeI GAWTC 4 cut(s) 8, 20, 605, 1030
PkrI GCNGC 2 cut(s) 216, 861
PleI GAGTC 2 cut(s) 963, 1018
PpsI GAGTC 2 cut(s) 963, 1018
PshBI ATTAAT 1 cut(s) 684
Psp124BI GAGCTC 1 cut(s) 758
PsuI RGATCY 1 cut(s) 422
PvuII CAGCTG 1 cut(s) 383
RsaI GTAC 3 cut(s) 75, 600, 890
RsaNI GTAC 3 cut(s) 74, 599, 889
RseI CAYNNNNRTG 1 cut(s) 90
SacI GAGCTC 1 cut(s) 758
SapI GCTCTTC 1 cut(s) 763
SaqAI TTAA 3 cut(s) 158, 558, 684
SatI GCNGC 2 cut(s) 215, 860
Sau3AI GATC 7 cut(s) 115, 276, 289, 319, 422, 632, 839
ScaI AGTACT 1 cut(s) 890
SchI GAGTC 2 cut(s) 964, 1018
ScrFI CCNGG 1 cut(s) 252
SduI GDGCHC 1 cut(s) 758
SfaNI GCATC 1 cut(s) 76
SmiMI CAYNNNNRTG 1 cut(s) 90
SmlI CTYRAG 2 cut(s) 557, 952
SmoI CTYRAG 2 cut(s) 557, 952
SphI GCATGC 1 cut(s) 627
Sse9I AATT 4 cut(s) 404, 508, 681, 794
SseBI AGGCCT 1 cut(s) 919
SsiI CCGC 2 cut(s) 57, 649
SspI AATATT 1 cut(s) 741
SspMI CTAG 1 cut(s) 12
SstI GAGCTC 1 cut(s) 758
StuI AGGCCT 1 cut(s) 919
StyD4I CCNGG 1 cut(s) 250
StyI CCWWGG 1 cut(s) 816
TaqI TCGA 1 cut(s) 275
TasI AATT 4 cut(s) 404, 508, 681, 794
TatI WGTACW 2 cut(s) 73, 888
TfiI GAWTC 4 cut(s) 8, 20, 605, 1030
Tru1I TTAA 3 cut(s) 158, 558, 684
Tru9I TTAA 3 cut(s) 158, 558, 684
TscAI CASTG 2 cut(s) 30, 366
TseFI GTSAC 3 cut(s) 136, 376, 847
TseI GCWGC 2 cut(s) 214, 859
Tsp45I GTSAC 3 cut(s) 136, 376, 847
TspDTI ATGAA 2 cut(s) 428, 657
TspGWI ACGGA 2 cut(s) 88, 948
TspRI CASTG 2 cut(s) 30, 366
Vha464I CTTAAG 1 cut(s) 557
VspI ATTAAT 1 cut(s) 684
XapI RAATTY 1 cut(s) 508
XceI RCATGY 3 cut(s) 532, 627, 837
XspI CTAG 1 cut(s) 12
ZrmI AGTACT 1 cut(s) 890
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.