Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0001439

Physical Location & Seq

Genomic Coordinates Reverse (-)

11053250 .. 11053761

Gene Structure 512 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG148700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGATGACTTTGAATTGCGAAGAGGCTCCTCTTGATGTTGATATTAAGGGGGGAGGAAGAGTTGTTGTTTTGAATACTAAGAACCTTCCTTTGGTTAGTGAGGTTGGGCTCGATGCTGATCTTGTTAGGTTGGACGGAAATGCTATGTGCTCCCCTGGGTTTTCTTGTGACTCTGCATTGCAGGTGACTTATATTGTTAGGGGCAGTGGTCGTGTCCAAGTTGTTGGTGTCAATAGGAGAGGATATTGGAAACAACCGTTACAGCTGATTGCTGATCCAAAAGGCTTGGAACGGTTCTCCATCATCACCACTGCTAATCCAATATTCACTCATTTGGCTGGAAGTATTGGTGCTTGGAAGATGTTATCTCCTCAGGTACTTGAGGCGTCCTTCAACGTGGATTCAGACACTGAGAGATTCTTTCGATCGAAGAGAACTTCTGATGCAATCTTCTTCCCTCCTTCGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

156

Amino Acids

17.05

Weight (kDa)

7.7

Isoelectric Point (pI)

38.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	13 - 78	2.8e-08	Cupin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001439)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07750 AT2G28680
fragaria_vesca	FvH4_2g37390 FvH4_3g34830 FvH4_3g34840
malus_domestica	MD03G1100900.v1.1 MD11G1115000.v1.1
prunus_persica	Prupe.6G085800_v2.0.a1 Prupe.6G085900_v2.0.a1
pyrus_communis	pycom03g08290 pycom11g09650
rosa_chinensis	RchiOBHm_Chr5g0062671 RchiOBHm_Chr5g0062681 RchiOBHm_Chr6g0304301
rosa_laevigata	RLG00000004146 RLG00000004904 RLG00000010993 RLG00000035570 RLG00000035572
rosa_multiflora	Rmu_sc0006470.1_g000001 Rmu_ssc0000218.1_g000036 Rmu_ssc0000472.1_g000022 Rmu_ssc0000472.1_g000023 Rmu_ssc0000472.1_g000028
rosa_roxburghii	Rroxscaffold_1G00017940 Rroxscaffold_1G00017950 Rroxscaffold_3G00260780 Rroxscaffold_7G00163860
rosa_rugosa	Rorug05G0350900 Rorug05G0351000 Rorug06G0329800 Rorug06G0470100 Rorug06G0493800 Rorug07G0020700
rosa_samantha	Rh5AG411700 Rh5AG411900 Rh5BG425700 Rh5BG425900 Rh5CG449800 Rh5CG450000 Rh5DG439700 Rh5DG439800 Rh6AG443200 Rh6BG459200 Rh6CG456000 Rh6DG442700 Rh7BG075100 Rh7BG100100 Rh7BG148700
rosa_wichuraiana	Rw5G038710 Rw5G038720 Rw6G038460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	172
Acc36I	ACCTGC	1 cut(s)	172
AclWI	GGATC	1 cut(s)	269
AcyI	GRCGYC	1 cut(s)	386
AfaI	GTAC	1 cut(s)	378
AfiI	CCNNNNNNNGG	1 cut(s)	91
AgsI	TTSAA	3 cut(s)	13, 73, 394
AjnI	CCWGG	1 cut(s)	154
AjuI	GAANNNNNNNTTGG	2 cut(s)	74, 106
AluBI	AGCT	1 cut(s)	265
AluI	AGCT	1 cut(s)	265
Alw21I	GWGCWC	1 cut(s)	152
AlwI	GGATC	1 cut(s)	269
AlwNI	CAGNNNCTG	1 cut(s)	410
AsuHPI	GGTGA	2 cut(s)	196, 298
AsuII	TTCGAA	1 cut(s)	464
AxyI	CCTNAGG	1 cut(s)	372
BanII	GRGCYC	1 cut(s)	111
Bbv12I	GWGCWC	1 cut(s)	152
BccI	CCATC	1 cut(s)	308
BciT130I	CCWGG	1 cut(s)	156
BfuAI	ACCTGC	1 cut(s)	172
Bme1390I	CCNGG	1 cut(s)	156
BmiI	GGNNCC	1 cut(s)	27
BmrFI	CCNGG	1 cut(s)	156
BmsI	GCATC	2 cut(s)	103, 433
Bpu14I	TTCGAA	1 cut(s)	464
BpuEI	CTTGAG	1 cut(s)	401
BsaBI	GATNNNNATC	1 cut(s)	117
BsaHI	GRCGYC	1 cut(s)	386
BsaJI	CCNNGG	2 cut(s)	154, 155
BsaXI	ACNNNNNCTCC	2 cut(s)	45, 75
Bsc4I	CCNNNNNNNGG	1 cut(s)	91
Bse21I	CCTNAGG	1 cut(s)	372
Bse3DI	GCAATG	1 cut(s)	176
Bse8I	GATNNNNATC	1 cut(s)	117
BseBI	CCWGG	1 cut(s)	156
BseDI	CCNNGG	2 cut(s)	154, 155
BseJI	GATNNNNATC	1 cut(s)	117
BseLI	CCNNNNNNNGG	1 cut(s)	91
BseMI	GCAATG	1 cut(s)	176
BseMII	CTCAG	2 cut(s)	386, 402
BseRI	GAGGAG	2 cut(s)	18, 360
Bsh1285I	CGRYCG	1 cut(s)	428
BsiEI	CGRYCG	1 cut(s)	428
BsiHKAI	GWGCWC	1 cut(s)	152
BslI	CCNNNNNNNGG	1 cut(s)	91
Bsp119I	TTCGAA	1 cut(s)	464
Bsp1286I	GDGCHC	2 cut(s)	111, 152
Bsp143I	GATC	3 cut(s)	118, 274, 425
BspCNI	CTCAG	2 cut(s)	385, 403
BspLI	GGNNCC	1 cut(s)	27
BspMI	ACCTGC	1 cut(s)	172
BspPI	GGATC	1 cut(s)	269
BspT104I	TTCGAA	1 cut(s)	464
BsrDI	GCAATG	1 cut(s)	176
BssECI	CCNNGG	2 cut(s)	154, 155
BssMI	GATC	3 cut(s)	118, 274, 425
BssNI	GRCGYC	1 cut(s)	386
Bst2UI	CCWGG	1 cut(s)	156
Bst4CI	ACNGT	2 cut(s)	258, 294
Bst6I	CTCTTC	3 cut(s)	15, 52, 425
BstACI	GRCGYC	1 cut(s)	386
BstBI	TTCGAA	1 cut(s)	464
BstDEI	CTNAG	3 cut(s)	78, 372, 411
BstKTI	GATC	3 cut(s)	121, 277, 428
BstMBI	GATC	3 cut(s)	118, 274, 425
BstMCI	CGRYCG	1 cut(s)	428
BstNI	CCWGG	1 cut(s)	156
BstSCI	CCNGG	1 cut(s)	154
BstXI	CCANNNNNNTGG	1 cut(s)	224
Bsu36I	CCTNAGG	1 cut(s)	372
BtsI	GCAGTG	2 cut(s)	211, 309
BtsIMutI	CAGTG	3 cut(s)	211, 309, 408
BveI	ACCTGC	1 cut(s)	172
CaiI	CAGNNNCTG	1 cut(s)	410
CseI	GACGC	1 cut(s)	375
Csp6I	GTAC	1 cut(s)	377
CviJI	RGCY	5 cut(s)	26, 109, 265, 285, 338
CviKI_1	RGCY	5 cut(s)	26, 109, 265, 285, 338
CviQI	GTAC	1 cut(s)	377
DdeI	CTNAG	3 cut(s)	78, 372, 411
DpnI	GATC	3 cut(s)	120, 276, 427
DpnII	GATC	3 cut(s)	118, 274, 425
Eam1104I	CTCTTC	3 cut(s)	15, 52, 425
EarI	CTCTTC	3 cut(s)	15, 52, 425
Eco24I	GRGCYC	1 cut(s)	111
Eco81I	CCTNAGG	1 cut(s)	372
EcoRII	CCWGG	1 cut(s)	154
EcoT38I	GRGCYC	1 cut(s)	111
FaiI	YATR	2 cut(s)	146, 192
FriOI	GRGCYC	1 cut(s)	111
HgaI	GACGC	1 cut(s)	375
Hin1I	GRCGYC	1 cut(s)	386
HinfI	GANTC	3 cut(s)	170, 401, 417
HphI	GGTGA	2 cut(s)	196, 298
Hpy188I	TCNGA	2 cut(s)	406, 442
Hpy188III	TCNNGA	1 cut(s)	32
HpyAV	CCTTC	3 cut(s)	95, 400, 471
HpyCH4III	ACNGT	2 cut(s)	258, 294
HpyCH4IV	ACGT	1 cut(s)	396
HpyCH4V	TGCA	3 cut(s)	176, 181, 446
HpyF3I	CTNAG	3 cut(s)	78, 372, 411
HpySE526I	ACGT	1 cut(s)	396
Hsp92I	GRCGYC	1 cut(s)	386
Kzo9I	GATC	3 cut(s)	118, 274, 425
LmnI	GCTCC	2 cut(s)	31, 155
LpnPI	CCDG	5 cut(s)	141, 167, 168, 324, 359
LweI	GCATC	2 cut(s)	103, 433
MaeII	ACGT	1 cut(s)	396
MaeIII	GTNAC	3 cut(s)	167, 184, 258
MalI	GATC	3 cut(s)	120, 276, 427
MboI	GATC	3 cut(s)	118, 274, 425
MboII	GAAGA	6 cut(s)	32, 69, 370, 442, 442, 445
MhlI	GDGCHC	2 cut(s)	111, 152
MluCI	AATT	1 cut(s)	13
MlyI	GAGTC	1 cut(s)	164
MmeI	TCCRAC	1 cut(s)	111
MnlI	CCTC	8 cut(s)	16, 39, 47, 94, 233, 376, 381, 468
MseI	TTAA	1 cut(s)	45
MspA1I	CMGCKG	1 cut(s)	265
MspR9I	CCNGG	1 cut(s)	156
MvaI	CCWGG	1 cut(s)	156
NdeII	GATC	3 cut(s)	118, 274, 425
NlaIV	GGNNCC	1 cut(s)	27
NmuCI	GTSAC	2 cut(s)	167, 184
NspV	TTCGAA	1 cut(s)	464
PaqCI	CACCTGC	1 cut(s)	172
PasI	CCCWGGG	1 cut(s)	155
PfeI	GAWTC	2 cut(s)	401, 417
Ple19I	CGATCG	1 cut(s)	428
PleI	GAGTC	1 cut(s)	164
PpsI	GAGTC	1 cut(s)	164
Psp6I	CCWGG	1 cut(s)	154
PspGI	CCWGG	1 cut(s)	154
PspN4I	GGNNCC	1 cut(s)	27
PstNI	CAGNNNCTG	1 cut(s)	410
PvuI	CGATCG	1 cut(s)	428
PvuII	CAGCTG	1 cut(s)	265
RsaI	GTAC	1 cut(s)	378
RsaNI	GTAC	1 cut(s)	377
SaqAI	TTAA	1 cut(s)	45
Sau3AI	GATC	3 cut(s)	118, 274, 425
SchI	GAGTC	1 cut(s)	164
ScrFI	CCNGG	1 cut(s)	156
SduI	GDGCHC	2 cut(s)	111, 152
SetI	ASST	7 cut(s)	87, 105, 131, 186, 267, 378, 399
SfaNI	GCATC	2 cut(s)	103, 433
SfuI	TTCGAA	1 cut(s)	464
SmlI	CTYRAG	1 cut(s)	380
SmoI	CTYRAG	1 cut(s)	380
Sse9I	AATT	1 cut(s)	13
SspI	AATATT	1 cut(s)	324
StyD4I	CCNGG	1 cut(s)	154
TaaI	ACNGT	2 cut(s)	258, 294
TaiI	ACGT	1 cut(s)	399
TaqI	TCGA	4 cut(s)	111, 424, 428, 464
TasI	AATT	1 cut(s)	13
TfiI	GAWTC	2 cut(s)	401, 417
Tru1I	TTAA	1 cut(s)	45
Tru9I	TTAA	1 cut(s)	45
TscAI	CASTG	3 cut(s)	211, 316, 415
TseFI	GTSAC	2 cut(s)	167, 184
Tsp45I	GTSAC	2 cut(s)	167, 184
TspGWI	ACGGA	1 cut(s)	150
TspRI	CASTG	3 cut(s)	211, 316, 415

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.