Rw5G038720

Glutelin type-A

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0001439
Physical Location & Seq
Forward (+)
68469389 .. 68471056
1668 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G038720.1

Sequence Viewer

Length: 1017 bp
ATGGAGATTGATCTTACACCAAGGTTGGCTAAGAAGGTTTATGGAGGAGATGGTGGTTCCTACTCTGACTGGTCCCCGTCGGAGCTTCCCATGCTCCGGGAAGGTGACATCGGAGCTGCCAAGCTCTCTCTGGAGAGGGACGGCTTTGCTCTCCCCAGTTACTCTGACTCTGCCAGAGTTGCTTATGTCCTTCAAGGTAATGGAGTAGTCGGAATTGTTCTGCCGGAGAAAGAAGAAAAAGTTCTTCCAGTGAAGAAGGGTGATGCCATTGCCCTGCCTTTTGGAGTTATCACTTGGTGGTACAACAAGGAGGACACTGAGTTTGTGGTTCTTTTCTTGGGTGATACCAAAACAGCTCACAAACGGGGAGAGTTCACCAATTTCTATCTCAATGGTTCTAATGGCATTTTCACTGGCTTCTCAACTGAGTTTGTCGGCCGAGCATGGGATTTGGAGGAGAGCGTTGTGAAGACTCTTGTTGGCAAGCAAACCGGCCAGGGCATTGTTAAGTTGGGGGGAGCTAATTTGCCTGAACCAAACAAGGAACATAGAGATGGGATGACATTGAACTGCGAAGAGGCTCCTCTTGATGTTGATATCAAGGGTGGTGGGAGAGTTGTTGTTTTGAATACTAAGAATCTTCCTTTGGTTGGTGAGGTTGGGCTTGGTGCTGATCTTGTTAGGTTGGATGGAAGTGCTATGTGCTCCCCTGGGTTTTCTTGTGACTCTGCATTGCAGGTGACTTACATTGTTAGGGGCAGTGGCCGTGTGCAAGTTGTTGGTGTAGATGGGAAGAGGGTCTTGGAAACAACTGTTACAGCTGGCAACTTGTTCATTGTTCCTCGATTCTTTGTCGTTTCAAAGATTGCTGATCCAGAAGGCTTGGAATGTATTGGAGCTTGGAAGGCATTATCTCCTCAGGTGCTTGAGGTTTCCTTCAAAGTGGATTCAGACACTGAGAAACTCTTCCGATCAAAGAGAACTTCTGATGCAATCTTCTTCCCTCCTCCAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

338

Amino Acids

36.51

Weight (kDa)

5.26

Isoelectric Point (pI)

30.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 11 - 156 6.6e-23 Cupin
Cupin_1 PF00190 198 - 298 6.9e-15 Cupin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 727
Acc36I ACCTGC 1 cut(s) 727
AclWI GGATC 1 cut(s) 866
AcoI YGGCCR 3 cut(s) 436, 493, 763
AdeI CACNNNGTG 1 cut(s) 297
AfaI GTAC 1 cut(s) 302
AfiI CCNNNNNNNGG 3 cut(s) 96, 445, 650
AgsI TTSAA 5 cut(s) 194, 568, 628, 861, 940
AjnI CCWGG 2 cut(s) 495, 709
AjuI GAANNNNNNNTTGG 4 cut(s) 629, 661, 785, 817
AluBI AGCT 7 cut(s) 85, 116, 124, 356, 521, 821, 899
AluI AGCT 7 cut(s) 85, 116, 124, 356, 521, 821, 899
Alw21I GWGCWC 1 cut(s) 707
AlwI GGATC 1 cut(s) 866
AlwNI CAGNNNCTG 1 cut(s) 956
AoxI GGCC 3 cut(s) 436, 493, 763
ApeKI GCWGC 1 cut(s) 116
ArsI GACNNNNNNTTYG 2 cut(s) 305, 337
Asp700I GAANNNNTTC 2 cut(s) 240, 965
AspS9I GGNCC 1 cut(s) 72
AsuC2I CCSGG 1 cut(s) 98
AsuHPI GGTGA 6 cut(s) 116, 272, 353, 367, 665, 751
AvaII GGWCC 1 cut(s) 72
AxyI CCTNAGG 1 cut(s) 918
BbsI GAAGAC 1 cut(s) 476
Bbv12I GWGCWC 1 cut(s) 707
BbvI GCAGC 1 cut(s) 103
BccI CCATC 4 cut(s) 44, 548, 683, 782
BceAI ACGGC 2 cut(s) 157, 750
BciT130I CCWGG 2 cut(s) 497, 711
BcnI CCSGG 1 cut(s) 98
BfuAI ACCTGC 1 cut(s) 727
BisI GCNGC 1 cut(s) 117
BlsI GCNGC 1 cut(s) 118
Bme1390I CCNGG 3 cut(s) 98, 497, 711
Bme18I GGWCC 1 cut(s) 72
BmgT120I GGNCC 1 cut(s) 72
BmiI GGNNCC 3 cut(s) 58, 74, 582
BmrFI CCNGG 3 cut(s) 98, 497, 711
BmrI ACTGGG 1 cut(s) 150
BmsI GCATC 2 cut(s) 253, 979
BmuI ACTGGG 1 cut(s) 150
BpiI GAAGAC 1 cut(s) 476
BpmI CTGGAG 1 cut(s) 152
BpuEI CTTGAG 1 cut(s) 947
BpuMI CCSGG 1 cut(s) 98
BsaJI CCNNGG 4 cut(s) 20, 496, 709, 710
Bsc4I CCNNNNNNNGG 3 cut(s) 96, 445, 650
Bse118I RCCGGY 1 cut(s) 491
Bse1I ACTGG 4 cut(s) 74, 156, 248, 418
Bse21I CCTNAGG 1 cut(s) 918
Bse3DI GCAATG 2 cut(s) 267, 731
BseBI CCWGG 2 cut(s) 497, 711
BseDI CCNNGG 4 cut(s) 20, 496, 709, 710
BseGI GGATG 2 cut(s) 564, 694
BseLI CCNNNNNNNGG 3 cut(s) 96, 445, 650
BseMI GCAATG 2 cut(s) 267, 731
BseMII CTCAG 4 cut(s) 309, 417, 932, 948
BseNI ACTGG 4 cut(s) 74, 156, 248, 418
BseRI GAGGAG 5 cut(s) 60, 470, 573, 906, 996
BseX3I CGGCCG 1 cut(s) 436
BseXI GCAGC 1 cut(s) 103
Bsh1285I CGRYCG 1 cut(s) 439
BshFI GGCC 3 cut(s) 438, 495, 765
BsiEI CGRYCG 1 cut(s) 439
BsiHKAI GWGCWC 1 cut(s) 707
BsiSI CCGG 3 cut(s) 97, 224, 492
BslFI GGGAC 2 cut(s) 58, 152
BslI CCNNNNNNNGG 3 cut(s) 96, 445, 650
BsmFI GGGAC 2 cut(s) 58, 152
BsnI GGCC 3 cut(s) 438, 495, 765
Bsp1286I GDGCHC 1 cut(s) 707
Bsp143I GATC 4 cut(s) 10, 673, 871, 971
BspANI GGCC 3 cut(s) 438, 495, 765
BspCNI CTCAG 4 cut(s) 310, 418, 931, 949
BspLI GGNNCC 3 cut(s) 58, 74, 582
BspMI ACCTGC 1 cut(s) 727
BspPI GGATC 1 cut(s) 866
BsrDI GCAATG 2 cut(s) 267, 731
BsrFI RCCGGY 1 cut(s) 491
BsrI ACTGG 4 cut(s) 74, 156, 248, 418
BssAI RCCGGY 1 cut(s) 491
BssECI CCNNGG 4 cut(s) 20, 496, 709, 710
BssMI GATC 4 cut(s) 10, 673, 871, 971
BssT1I CCWWGG 1 cut(s) 20
Bst2UI CCWGG 2 cut(s) 497, 711
Bst4CI ACNGT 1 cut(s) 814
Bst6I CTCTTC 3 cut(s) 570, 788, 971
BstC8I GCNNGC 2 cut(s) 485, 823
BstDEI CTNAG 6 cut(s) 30, 318, 426, 633, 918, 957
BstF5I GGATG 2 cut(s) 564, 694
BstKTI GATC 4 cut(s) 13, 676, 874, 974
BstMBI GATC 4 cut(s) 10, 673, 871, 971
BstMCI CGRYCG 1 cut(s) 439
BstMWI GCNNNNNNNGC 3 cut(s) 91, 179, 905
BstNI CCWGG 2 cut(s) 497, 711
BstSCI CCNGG 3 cut(s) 96, 495, 709
BstV1I GCAGC 1 cut(s) 103
BstV2I GAAGAC 1 cut(s) 476
BstZI CGGCCG 1 cut(s) 436
Bsu36I CCTNAGG 1 cut(s) 918
BsuRI GGCC 3 cut(s) 438, 495, 765
BtsCI GGATG 2 cut(s) 564, 694
BtsI GCAGTG 1 cut(s) 766
BtsIMutI CAGTG 5 cut(s) 255, 315, 411, 766, 954
BveI ACCTGC 1 cut(s) 727
Cac8I GCNNGC 2 cut(s) 485, 823
CaiI CAGNNNCTG 1 cut(s) 956
Cfr10I RCCGGY 1 cut(s) 491
Cfr13I GGNCC 1 cut(s) 72
Csp6I GTAC 1 cut(s) 301
CspCI CAANNNNNGTGG 2 cut(s) 589, 624
CviAII CATG 2 cut(s) 91, 444
CviQI GTAC 1 cut(s) 301
DdeI CTNAG 6 cut(s) 30, 318, 426, 633, 918, 957
DpnI GATC 4 cut(s) 12, 675, 873, 973
DpnII GATC 4 cut(s) 10, 673, 871, 971
DraIII CACNNNGTG 1 cut(s) 297
EaeI YGGCCR 3 cut(s) 436, 493, 763
EagI CGGCCG 1 cut(s) 436
Eam1104I CTCTTC 3 cut(s) 570, 788, 971
EarI CTCTTC 3 cut(s) 570, 788, 971
EclXI CGGCCG 1 cut(s) 436
Eco130I CCWWGG 1 cut(s) 20
Eco32I GATATC 1 cut(s) 598
Eco47I GGWCC 1 cut(s) 72
Eco52I CGGCCG 1 cut(s) 436
Eco81I CCTNAGG 1 cut(s) 918
EcoRII CCWGG 2 cut(s) 495, 709
EcoRV GATATC 1 cut(s) 598
EcoT14I CCWWGG 1 cut(s) 20
ErhI CCWWGG 1 cut(s) 20
FaeI CATG 2 cut(s) 94, 447
FaiI YATR 6 cut(s) 42, 92, 186, 445, 549, 701
FalI AAGNNNNNCTT 2 cut(s) 785, 817
FaqI GGGAC 2 cut(s) 58, 152
FatI CATG 2 cut(s) 90, 443
Fnu4HI GCNGC 1 cut(s) 117
FokI GGATG 2 cut(s) 571, 701
Fsp4HI GCNGC 1 cut(s) 117
GluI GCNGC 1 cut(s) 117
GsuI CTGGAG 1 cut(s) 152
HaeIII GGCC 3 cut(s) 438, 495, 765
HapII CCGG 3 cut(s) 97, 224, 492
Hin1II CATG 2 cut(s) 94, 447
HinfI GANTC 6 cut(s) 167, 472, 637, 725, 846, 947
HpaII CCGG 3 cut(s) 97, 224, 492
HphI GGTGA 6 cut(s) 116, 272, 353, 367, 665, 751
Hpy166II GTNNAC 1 cut(s) 375
Hpy188I TCNGA 8 cut(s) 67, 82, 113, 166, 212, 952, 971, 988
Hpy188III TCNNGA 3 cut(s) 131, 587, 875
Hpy8I GTNNAC 1 cut(s) 375
Hpy99I CGWCG 1 cut(s) 82
HpyAV CCTTC 7 cut(s) 28, 95, 200, 250, 872, 898, 946
HpyCH4III ACNGT 1 cut(s) 814
HpyCH4V TGCA 4 cut(s) 731, 736, 772, 992
HpyF10VI GCNNNNNNNGC 3 cut(s) 91, 179, 905
HpyF3I CTNAG 6 cut(s) 30, 318, 426, 633, 918, 957
Hsp92II CATG 2 cut(s) 94, 447
Kzo9I GATC 4 cut(s) 10, 673, 871, 971
LmnI GCTCC 7 cut(s) 82, 99, 113, 518, 586, 710, 896
Lsp1109I GCAGC 1 cut(s) 103
LweI GCATC 2 cut(s) 253, 979
MaeIII GTNAC 5 cut(s) 104, 158, 722, 739, 814
MalI GATC 4 cut(s) 12, 675, 873, 973
MboI GATC 4 cut(s) 10, 673, 871, 971
MhlI GDGCHC 1 cut(s) 707
MluCI AATT 3 cut(s) 213, 379, 523
MlyI GAGTC 3 cut(s) 161, 466, 719
MmeI TCCRAC 3 cut(s) 60, 190, 666
MroXI GAANNNNTTC 2 cut(s) 240, 965
MseI TTAA 1 cut(s) 507
MslI CAYNNNNRTG 1 cut(s) 552
MspA1I CMGCKG 1 cut(s) 821
MspI CCGG 3 cut(s) 97, 224, 492
MspR9I CCNGG 3 cut(s) 98, 497, 711
MvaI CCWGG 2 cut(s) 497, 711
MwoI GCNNNNNNNGC 3 cut(s) 91, 179, 905
NciI CCSGG 1 cut(s) 98
NdeII GATC 4 cut(s) 10, 673, 871, 971
NlaIII CATG 2 cut(s) 94, 447
NlaIV GGNNCC 3 cut(s) 58, 74, 582
NmeAIII GCCGAG 1 cut(s) 464
NmuCI GTSAC 3 cut(s) 104, 722, 739
PaqCI CACCTGC 1 cut(s) 727
PasI CCCWGGG 1 cut(s) 710
PdmI GAANNNNTTC 2 cut(s) 240, 965
PfeI GAWTC 3 cut(s) 637, 846, 947
PfoI TCCNGGA 1 cut(s) 96
PkrI GCNGC 1 cut(s) 118
PleI GAGTC 3 cut(s) 161, 466, 719
PpsI GAGTC 3 cut(s) 161, 466, 719
Psp6I CCWGG 2 cut(s) 495, 709
PspGI CCWGG 2 cut(s) 495, 709
PspN4I GGNNCC 3 cut(s) 58, 74, 582
PspPI GGNCC 1 cut(s) 72
PstNI CAGNNNCTG 1 cut(s) 956
PvuII CAGCTG 1 cut(s) 821
RsaI GTAC 1 cut(s) 302
RsaNI GTAC 1 cut(s) 301
RseI CAYNNNNRTG 1 cut(s) 552
SaqAI TTAA 1 cut(s) 507
SatI GCNGC 1 cut(s) 117
Sau3AI GATC 4 cut(s) 10, 673, 871, 971
Sau96I GGNCC 1 cut(s) 72
SchI GAGTC 3 cut(s) 161, 466, 719
ScrFI CCNGG 3 cut(s) 98, 497, 711
SduI GDGCHC 1 cut(s) 707
SfaNI GCATC 2 cut(s) 253, 979
SinI GGWCC 1 cut(s) 72
SmiMI CAYNNNNRTG 1 cut(s) 552
SmlI CTYRAG 1 cut(s) 926
SmoI CTYRAG 1 cut(s) 926
Sse9I AATT 3 cut(s) 213, 379, 523
StyD4I CCNGG 3 cut(s) 96, 495, 709
StyI CCWWGG 1 cut(s) 20
TaaI ACNGT 1 cut(s) 814
TaqI TCGA 1 cut(s) 844
TasI AATT 3 cut(s) 213, 379, 523
TfiI GAWTC 3 cut(s) 637, 846, 947
Tru1I TTAA 1 cut(s) 507
Tru9I TTAA 1 cut(s) 507
TscAI CASTG 5 cut(s) 255, 322, 418, 766, 961
TseFI GTSAC 3 cut(s) 104, 722, 739
TseI GCWGC 1 cut(s) 116
Tsp45I GTSAC 3 cut(s) 104, 722, 739
TspDTI ATGAA 1 cut(s) 823
TspRI CASTG 5 cut(s) 255, 322, 418, 766, 961
VpaK11BI GGWCC 1 cut(s) 72
XcmI CCANNNNNNNNNTGG 1 cut(s) 127
XmnI GAANNNNTTC 2 cut(s) 240, 965
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.