RLG00000004146

Glutelin type-A

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0001439
Physical Location & Seq
Forward (+)
56595912 .. 56597068
1157 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004146

Sequence Viewer

Length: 831 bp
ATGGAGATTGATCTTACACCAAGGTTAGCTAAGAAAGTTTATGGAGGAGATGGTGGTTCCTACTTTGCCTGGTCCTCATTGGAGCTTCCCATACTCCGTGAAGAAGACATTGGAGCTGCCAAGCTCTCTCTAGAAAAGAACAGCTTTGCTCTCCCAAATTACTCTGACTCTGCCAAGAGTTGCTTATGTCCTTCAGGAGTAGTCGGAATTGTTCTGCCCGAGAAGGAAGAAAAGGTCCTTCTAGTGAAGAAGGCTTTTGGAGTTATCCCTTGGTGGTACAACAAGGAGGACATTGAGTTTGTGGTTCTTTTCTTAGCTGATACCAAAACAGCTCACAAAAGGGGGGAGTTCACTGACTTCTATCTAAATGGTTCTAATGACATTTTCACTAACTTCTCAATTGAGTTTGTTAGCCGAGCATGGGATTTGGAGGAGAGTGTTGTGAAGACTCTTGTTGACAAGCAAACTGGCAAGGGCATTGTTAAGTTGGGGGCAGCTAGTTTGCCTGAGGCAAACAAGGAACATAGAGATGAGATGACTTTGAATTGCAAAGAGGCTCCTCTTGATGTTGATAACCTTCCTTTGGTTAGTGAGGTTGGGCTCGGTGCTGATCTTGTTAGGTTGGACGGAAATGCTATGTGCTCCCCTGGGTTATCTTGTGACTCCGCATTACAGGTGACTTATATTGTTAGGGGCAGTGGTCGTGTCCAAGTTGTTGGTGTCAATAGGAAGAGGATATTGGAAACAACGGTTACAACTAGTAAGTTGTTCATCGTTCCTCGATTCTCCATCATCACCACTGCTAATCCAATATTCACTCATTTGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

277

Amino Acids

30.32

Weight (kDa)

5.41

Isoelectric Point (pI)

31.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 187 - 269 7.7e-08 Cupin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 666
AcuI CTGAAG 1 cut(s) 177
AfaI GTAC 1 cut(s) 278
AfiI CCNNNNNNNGG 2 cut(s) 421, 583
AgsI TTSAA 1 cut(s) 544
AhlI ACTAGT 1 cut(s) 758
AjnI CCWGG 2 cut(s) 68, 646
AjuI GAANNNNNNNTTGG 4 cut(s) 93, 125, 722, 754
AluBI AGCT 8 cut(s) 29, 85, 116, 124, 144, 317, 332, 497
AluI AGCT 8 cut(s) 29, 85, 116, 124, 144, 317, 332, 497
Alw21I GWGCWC 1 cut(s) 644
Ama87I CYCGRG 1 cut(s) 218
ApeKI GCWGC 2 cut(s) 116, 494
ArsI GACNNNNNNTTYG 2 cut(s) 281, 313
AspS9I GGNCC 2 cut(s) 72, 235
AsuHPI GGTGA 2 cut(s) 688, 787
AvaI CYCGRG 1 cut(s) 218
AvaII GGWCC 2 cut(s) 72, 235
AxyI CCTNAGG 1 cut(s) 507
BanII GRGCYC 1 cut(s) 603
BbsI GAAGAC 2 cut(s) 111, 452
Bbv12I GWGCWC 1 cut(s) 644
BbvI GCAGC 2 cut(s) 103, 506
BccI CCATC 2 cut(s) 44, 797
BciT130I CCWGG 2 cut(s) 70, 648
BcuI ACTAGT 1 cut(s) 758
BfaI CTAG 4 cut(s) 131, 242, 498, 759
BisI GCNGC 2 cut(s) 117, 495
BlsI GCNGC 2 cut(s) 118, 496
Bme1390I CCNGG 2 cut(s) 70, 648
Bme18I GGWCC 2 cut(s) 72, 235
BmeT110I CYCGRG 1 cut(s) 218
BmgT120I GGNCC 2 cut(s) 72, 235
BmiI GGNNCC 2 cut(s) 58, 558
BmrFI CCNGG 2 cut(s) 70, 648
BpiI GAAGAC 2 cut(s) 111, 452
BsaJI CCNNGG 4 cut(s) 20, 269, 646, 647
Bsc4I CCNNNNNNNGG 2 cut(s) 421, 583
Bse1I ACTGG 1 cut(s) 472
Bse21I CCTNAGG 1 cut(s) 507
BseBI CCWGG 2 cut(s) 70, 648
BseDI CCNNGG 4 cut(s) 20, 269, 646, 647
BseLI CCNNNNNNNGG 2 cut(s) 421, 583
BseMII CTCAG 1 cut(s) 498
BseNI ACTGG 1 cut(s) 472
BseRI GAGGAG 3 cut(s) 60, 446, 549
BseXI GCAGC 2 cut(s) 103, 506
BsiHKAI GWGCWC 1 cut(s) 644
BsiHKCI CYCGRG 1 cut(s) 218
BslI CCNNNNNNNGG 2 cut(s) 421, 583
BsoBI CYCGRG 1 cut(s) 218
Bsp1286I GDGCHC 2 cut(s) 603, 644
Bsp143I GATC 2 cut(s) 10, 610
BspACI CCGC 1 cut(s) 666
BspCNI CTCAG 1 cut(s) 499
BspLI GGNNCC 2 cut(s) 58, 558
BsrI ACTGG 1 cut(s) 472
BssECI CCNNGG 4 cut(s) 20, 269, 646, 647
BssMI GATC 2 cut(s) 10, 610
BssT1I CCWWGG 2 cut(s) 20, 269
Bst2UI CCWGG 2 cut(s) 70, 648
Bst4CI ACNGT 1 cut(s) 751
Bst6I CTCTTC 1 cut(s) 725
BstDEI CTNAG 3 cut(s) 30, 313, 507
BstKTI GATC 2 cut(s) 13, 613
BstMBI GATC 2 cut(s) 10, 610
BstNI CCWGG 2 cut(s) 70, 648
BstSCI CCNGG 2 cut(s) 68, 646
BstV1I GCAGC 2 cut(s) 103, 506
BstV2I GAAGAC 2 cut(s) 111, 452
BstXI CCANNNNNNTGG 1 cut(s) 716
Bsu36I CCTNAGG 1 cut(s) 507
BtsI GCAGTG 2 cut(s) 703, 798
BtsIMutI CAGTG 3 cut(s) 351, 703, 798
Cfr13I GGNCC 2 cut(s) 72, 235
Csp6I GTAC 1 cut(s) 277
CviAII CATG 1 cut(s) 420
CviQI GTAC 1 cut(s) 277
DdeI CTNAG 3 cut(s) 30, 313, 507
DpnI GATC 2 cut(s) 12, 612
DpnII GATC 2 cut(s) 10, 610
Eam1104I CTCTTC 1 cut(s) 725
EarI CTCTTC 1 cut(s) 725
Eco130I CCWWGG 2 cut(s) 20, 269
Eco24I GRGCYC 1 cut(s) 603
Eco47I GGWCC 2 cut(s) 72, 235
Eco57I CTGAAG 1 cut(s) 177
Eco81I CCTNAGG 1 cut(s) 507
Eco88I CYCGRG 1 cut(s) 218
EcoO109I RGGNCCY 1 cut(s) 235
EcoRII CCWGG 2 cut(s) 68, 646
EcoT14I CCWWGG 2 cut(s) 20, 269
EcoT38I GRGCYC 1 cut(s) 603
ErhI CCWWGG 2 cut(s) 20, 269
FaeI CATG 1 cut(s) 423
FaiI YATR 7 cut(s) 42, 92, 187, 421, 525, 638, 684
FalI AAGNNNNNCTT 4 cut(s) 128, 160, 167, 199
FatI CATG 1 cut(s) 419
Fnu4HI GCNGC 2 cut(s) 117, 495
FriOI GRGCYC 1 cut(s) 603
Fsp4HI GCNGC 2 cut(s) 117, 495
FspBI CTAG 4 cut(s) 131, 242, 498, 759
GluI GCNGC 2 cut(s) 117, 495
Hin1II CATG 1 cut(s) 423
HincII GTYRAC 1 cut(s) 457
HindII GTYRAC 1 cut(s) 457
HinfI GANTC 4 cut(s) 167, 448, 662, 783
HphI GGTGA 2 cut(s) 688, 787
Hpy166II GTNNAC 2 cut(s) 351, 457
Hpy188I TCNGA 2 cut(s) 166, 206
Hpy188III TCNNGA 3 cut(s) 131, 195, 563
Hpy8I GTNNAC 2 cut(s) 351, 457
HpyAV CCTTC 5 cut(s) 201, 217, 244, 248, 587
HpyCH4III ACNGT 1 cut(s) 751
HpyCH4V TGCA 1 cut(s) 549
HpyF3I CTNAG 3 cut(s) 30, 313, 507
Hsp92II CATG 1 cut(s) 423
Kzo9I GATC 2 cut(s) 10, 610
LmnI GCTCC 4 cut(s) 82, 113, 562, 647
LpnPI CCDG 8 cut(s) 55, 82, 180, 453, 519, 633, 659, 660
Lsp1109I GCAGC 2 cut(s) 103, 506
MaeI CTAG 4 cut(s) 131, 242, 498, 759
MaeIII GTNAC 3 cut(s) 659, 676, 751
MalI GATC 2 cut(s) 12, 612
MboI GATC 2 cut(s) 10, 610
MboII GAAGA 6 cut(s) 113, 116, 239, 259, 457, 742
MfeI CAATTG 1 cut(s) 399
MhlI GDGCHC 2 cut(s) 603, 644
MluCI AATT 4 cut(s) 157, 207, 399, 544
MlyI GAGTC 3 cut(s) 161, 442, 656
MmeI TCCRAC 2 cut(s) 184, 603
MseI TTAA 1 cut(s) 483
MslI CAYNNNNRTG 1 cut(s) 528
MspR9I CCNGG 2 cut(s) 70, 648
MunI CAATTG 1 cut(s) 399
MvaI CCWGG 2 cut(s) 70, 648
NdeII GATC 2 cut(s) 10, 610
NlaIII CATG 1 cut(s) 423
NlaIV GGNNCC 2 cut(s) 58, 558
NmeAIII GCCGAG 1 cut(s) 440
NmuCI GTSAC 2 cut(s) 659, 676
PasI CCCWGGG 1 cut(s) 647
PfeI GAWTC 1 cut(s) 783
PkrI GCNGC 2 cut(s) 118, 496
PleI GAGTC 3 cut(s) 161, 442, 656
PpsI GAGTC 3 cut(s) 161, 442, 656
PpuMI RGGWCCY 1 cut(s) 235
Psp5II RGGWCCY 1 cut(s) 235
Psp6I CCWGG 2 cut(s) 68, 646
PspGI CCWGG 2 cut(s) 68, 646
PspN4I GGNNCC 2 cut(s) 58, 558
PspPI GGNCC 2 cut(s) 72, 235
PspPPI RGGWCCY 1 cut(s) 235
RsaI GTAC 1 cut(s) 278
RsaNI GTAC 1 cut(s) 277
RseI CAYNNNNRTG 1 cut(s) 528
SaqAI TTAA 1 cut(s) 483
SatI GCNGC 2 cut(s) 117, 495
Sau3AI GATC 2 cut(s) 10, 610
Sau96I GGNCC 2 cut(s) 72, 235
SchI GAGTC 3 cut(s) 161, 442, 656
ScrFI CCNGG 2 cut(s) 70, 648
SduI GDGCHC 2 cut(s) 603, 644
SinI GGWCC 2 cut(s) 72, 235
SmiMI CAYNNNNRTG 1 cut(s) 528
SpeI ACTAGT 1 cut(s) 758
Sse9I AATT 4 cut(s) 157, 207, 399, 544
SsiI CCGC 1 cut(s) 666
SspI AATATT 1 cut(s) 813
SspMI CTAG 4 cut(s) 131, 242, 498, 759
StyD4I CCNGG 2 cut(s) 68, 646
StyI CCWWGG 2 cut(s) 20, 269
TaaI ACNGT 1 cut(s) 751
TaqI TCGA 1 cut(s) 781
TasI AATT 4 cut(s) 157, 207, 399, 544
TfiI GAWTC 1 cut(s) 783
Tru1I TTAA 1 cut(s) 483
Tru9I TTAA 1 cut(s) 483
TscAI CASTG 3 cut(s) 358, 703, 805
TseFI GTSAC 2 cut(s) 659, 676
TseI GCWGC 2 cut(s) 116, 494
Tsp45I GTSAC 2 cut(s) 659, 676
TspDTI ATGAA 1 cut(s) 760
TspGWI ACGGA 2 cut(s) 86, 642
TspRI CASTG 3 cut(s) 358, 703, 805
VpaK11BI GGWCC 2 cut(s) 72, 235
XbaI TCTAGA 1 cut(s) 130
XspI CTAG 4 cut(s) 131, 242, 498, 759
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.