Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006470.1

Orthogroup ID

OG0001439

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1029

Gene Structure 1029 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006470.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

aaggaagagaaggttcttccagtgaagaagggtgatgccattgccctccctttcggagttatcacttggtggcacaacaaggaggacactgagtttgtagttcttttcttgggtgataccaaaacagctcacaaaaggggtgagttcaccaacttctatctcactggtactaatggcattttcactggtttctcaactgagtttgtcggccgagcatgggatttggaggagagtgttgtgaagactcttgttggcaagcaaagcggtcagggcattgttaagttgggggcatctaatttgcctgaggcaaagaacgagcatagagatgggatgacattgaattgcgaagaagctcccttagatgttgatatcaagggtggtggaagagttgttgttttgaatactaagaaccttcctttggtcggagaggttgggcttggtgctgatctggttaggttggacggaagtgccatgtgctcccctgggttttcttgtgactctgcattgcaggtgacttacattgttagaggcagtggccgtgcccaagttgttggggttgatgggaagagggtcttggaaacaaccgtcaaagctggtaacttgttcattgttcctagattctttattgtttcaaaaattgctgatccagaaggcttggaatggttctccatcatcactactcccaacccgatcttcacccacatggctggaagtattggttgttggaaagctctatctccgaaggtgctcgagtcttctttcaatgtggattctgataccgagcaacttttccgttcaaagaggacttcggatgcaatcttcttccctccaccaaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

279

Amino Acids

30.32

Weight (kDa)

6.16

Isoelectric Point (pI)

30.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001439)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07750 AT2G28680
fragaria_vesca	FvH4_2g37390 FvH4_3g34830 FvH4_3g34840
malus_domestica	MD03G1100900.v1.1 MD11G1115000.v1.1
prunus_persica	Prupe.6G085800_v2.0.a1 Prupe.6G085900_v2.0.a1
pyrus_communis	pycom03g08290 pycom11g09650
rosa_chinensis	RchiOBHm_Chr5g0062671 RchiOBHm_Chr5g0062681 RchiOBHm_Chr6g0304301
rosa_laevigata	RLG00000004146 RLG00000004904 RLG00000010993 RLG00000035570 RLG00000035572
rosa_multiflora	Rmu_sc0006470.1_g000001 Rmu_ssc0000218.1_g000036 Rmu_ssc0000472.1_g000022 Rmu_ssc0000472.1_g000023 Rmu_ssc0000472.1_g000028
rosa_roxburghii	Rroxscaffold_1G00017940 Rroxscaffold_1G00017950 Rroxscaffold_3G00260780 Rroxscaffold_7G00163860
rosa_rugosa	Rorug05G0350900 Rorug05G0351000 Rorug06G0329800 Rorug06G0470100 Rorug06G0493800 Rorug07G0020700
rosa_samantha	Rh5AG411700 Rh5AG411900 Rh5BG425700 Rh5BG425900 Rh5CG449800 Rh5CG450000 Rh5DG439700 Rh5DG439800 Rh6AG443200 Rh6BG459200 Rh6CG456000 Rh6DG442700 Rh7BG075100 Rh7BG100100 Rh7BG148700
rosa_wichuraiana	Rw5G038710 Rw5G038720 Rw6G038460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	499
Acc36I	ACCTGC	1 cut(s)	499
AciI	CCGC	1 cut(s)	264
AclWI	GGATC	1 cut(s)	638
AcoI	YGGCCR	2 cut(s)	208, 535
AdeI	CACNNNGTG	1 cut(s)	69
AfaI	GTAC	1 cut(s)	169
AfiI	CCNNNNNNNGG	3 cut(s)	217, 418, 422
AgsI	TTSAA	5 cut(s)	340, 400, 633, 763, 798
AjnI	CCWGG	1 cut(s)	481
AjuI	GAANNNNNNNTTGG	6 cut(s)	401, 433, 557, 589, 677, 709
AleI	CACNNNNGTG	1 cut(s)	835
AluBI	AGCT	4 cut(s)	128, 353, 593, 731
AluI	AGCT	4 cut(s)	128, 353, 593, 731
Alw21I	GWGCWC	2 cut(s)	479, 750
AlwI	GGATC	1 cut(s)	638
Ama87I	CYCGRG	1 cut(s)	749
AoxI	GGCC	2 cut(s)	208, 535
ArsI	GACNNNNNNTTYG	2 cut(s)	77, 109
AsuHPI	GGTGA	6 cut(s)	44, 125, 139, 152, 523, 688
AvaI	CYCGRG	1 cut(s)	749
AxyI	CCTNAGG	1 cut(s)	303
BaeGI	GKGCMC	1 cut(s)	544
BbsI	GAAGAC	2 cut(s)	248, 747
Bbv12I	GWGCWC	2 cut(s)	479, 750
BccI	CCATC	3 cut(s)	320, 554, 677
BceAI	ACGGC	1 cut(s)	522
BciT130I	CCWGG	1 cut(s)	483
BfaI	CTAG	1 cut(s)	615
BfuAI	ACCTGC	1 cut(s)	499
Bme1390I	CCNGG	1 cut(s)	483
BmeT110I	CYCGRG	1 cut(s)	749
BmrFI	CCNGG	1 cut(s)	483
BmsI	GCATC	3 cut(s)	25, 299, 802
BpiI	GAAGAC	2 cut(s)	248, 747
BsaJI	CCNNGG	2 cut(s)	481, 482
Bsc4I	CCNNNNNNNGG	3 cut(s)	217, 418, 422
Bse1I	ACTGG	3 cut(s)	20, 169, 190
Bse21I	CCTNAGG	1 cut(s)	303
Bse3DI	GCAATG	2 cut(s)	39, 503
BseBI	CCWGG	1 cut(s)	483
BseDI	CCNNGG	2 cut(s)	481, 482
BseGI	GGATG	2 cut(s)	336, 817
BseLI	CCNNNNNNNGG	3 cut(s)	217, 418, 422
BseMI	GCAATG	2 cut(s)	39, 503
BseMII	CTCAG	3 cut(s)	81, 189, 294
BseNI	ACTGG	3 cut(s)	20, 169, 190
BseRI	GAGGAG	1 cut(s)	242
BseSI	GKGCMC	1 cut(s)	544
BseX3I	CGGCCG	1 cut(s)	208
Bsh1285I	CGRYCG	1 cut(s)	211
BshFI	GGCC	2 cut(s)	210, 537
BsiEI	CGRYCG	1 cut(s)	211
BsiHKAI	GWGCWC	2 cut(s)	479, 750
BsiHKCI	CYCGRG	1 cut(s)	749
BslI	CCNNNNNNNGG	3 cut(s)	217, 418, 422
BsnI	GGCC	2 cut(s)	210, 537
BsoBI	CYCGRG	1 cut(s)	749
Bsp1286I	GDGCHC	3 cut(s)	479, 544, 750
Bsp143I	GATC	3 cut(s)	445, 643, 690
BspACI	CCGC	1 cut(s)	264
BspANI	GGCC	2 cut(s)	210, 537
BspCNI	CTCAG	3 cut(s)	82, 190, 295
BspMI	ACCTGC	1 cut(s)	499
BspPI	GGATC	1 cut(s)	638
BsrDI	GCAATG	2 cut(s)	39, 503
BsrI	ACTGG	3 cut(s)	20, 169, 190
BssECI	CCNNGG	2 cut(s)	481, 482
BssMI	GATC	3 cut(s)	445, 643, 690
Bst2UI	CCWGG	1 cut(s)	483
Bst4CI	ACNGT	1 cut(s)	586
Bst6I	CTCTTC	2 cut(s)	379, 560
BstC8I	GCNNGC	1 cut(s)	257
BstDEI	CTNAG	5 cut(s)	90, 198, 303, 358, 405
BstF5I	GGATG	2 cut(s)	336, 817
BstKTI	GATC	3 cut(s)	448, 646, 693
BstMBI	GATC	3 cut(s)	445, 643, 690
BstMCI	CGRYCG	1 cut(s)	211
BstMWI	GCNNNNNNNGC	2 cut(s)	261, 270
BstNI	CCWGG	1 cut(s)	483
BstSCI	CCNGG	1 cut(s)	481
BstSLI	GKGCMC	1 cut(s)	544
BstV2I	GAAGAC	2 cut(s)	248, 747
BstXI	CCANNNNNNTGG	2 cut(s)	551, 707
BstZI	CGGCCG	1 cut(s)	208
Bsu36I	CCTNAGG	1 cut(s)	303
BsuRI	GGCC	2 cut(s)	210, 537
BtsCI	GGATG	2 cut(s)	336, 817
BtsI	GCAGTG	1 cut(s)	538
BtsIMutI	CAGTG	5 cut(s)	27, 87, 162, 183, 538
BveI	ACCTGC	1 cut(s)	499
Cac8I	GCNNGC	1 cut(s)	257
Csp6I	GTAC	1 cut(s)	168
CspCI	CAANNNNNGTGG	2 cut(s)	361, 396
CviAII	CATG	3 cut(s)	216, 472, 703
CviJI	RGCY	9 cut(s)	128, 210, 353, 436, 537, 593, 654, 707, 731
CviKI_1	RGCY	9 cut(s)	128, 210, 353, 436, 537, 593, 654, 707, 731
CviQI	GTAC	1 cut(s)	168
DdeI	CTNAG	5 cut(s)	90, 198, 303, 358, 405
DpnI	GATC	3 cut(s)	447, 645, 692
DpnII	GATC	3 cut(s)	445, 643, 690
DraIII	CACNNNGTG	1 cut(s)	69
EaeI	YGGCCR	2 cut(s)	208, 535
EagI	CGGCCG	1 cut(s)	208
Eam1104I	CTCTTC	2 cut(s)	379, 560
EarI	CTCTTC	2 cut(s)	379, 560
EclXI	CGGCCG	1 cut(s)	208
Eco32I	GATATC	1 cut(s)	370
Eco52I	CGGCCG	1 cut(s)	208
Eco81I	CCTNAGG	1 cut(s)	303
Eco88I	CYCGRG	1 cut(s)	749
EcoRII	CCWGG	1 cut(s)	481
EcoRV	GATATC	1 cut(s)	370
FaeI	CATG	3 cut(s)	219, 475, 706
FaiI	YATR	4 cut(s)	217, 321, 473, 704
FalI	AAGNNNNNCTT	2 cut(s)	557, 589
FatI	CATG	3 cut(s)	215, 471, 702
FokI	GGATG	2 cut(s)	343, 824
FspBI	CTAG	1 cut(s)	615
HaeIII	GGCC	2 cut(s)	210, 537
Hin1II	CATG	3 cut(s)	219, 475, 706
HinfI	GANTC	5 cut(s)	244, 497, 618, 752, 770
HphI	GGTGA	6 cut(s)	44, 125, 139, 152, 523, 688
Hpy166II	GTNNAC	1 cut(s)	147
Hpy188I	TCNGA	5 cut(s)	56, 425, 741, 775, 811
Hpy188III	TCNNGA	1 cut(s)	647
Hpy8I	GTNNAC	1 cut(s)	147
HpyAV	CCTTC	5 cut(s)	4, 22, 422, 644, 736
HpyCH4III	ACNGT	1 cut(s)	586
HpyCH4V	TGCA	3 cut(s)	503, 508, 815
HpyF10VI	GCNNNNNNNGC	2 cut(s)	261, 270
HpyF3I	CTNAG	5 cut(s)	90, 198, 303, 358, 405
Hsp92II	CATG	3 cut(s)	219, 475, 706
Kzo9I	GATC	3 cut(s)	445, 643, 690
LmnI	GCTCC	2 cut(s)	358, 482
LweI	GCATC	3 cut(s)	25, 299, 802
MaeI	CTAG	1 cut(s)	615
MaeIII	GTNAC	3 cut(s)	494, 511, 596
MalI	GATC	3 cut(s)	447, 645, 692
MboI	GATC	3 cut(s)	445, 643, 690
MhlI	GDGCHC	3 cut(s)	479, 544, 750
MluCI	AATT	3 cut(s)	295, 340, 636
MlyI	GAGTC	3 cut(s)	238, 491, 761
MmeI	TCCRAC	3 cut(s)	403, 438, 704
MnlI	CCTC	9 cut(s)	56, 76, 220, 298, 421, 521, 561, 795, 837
MseI	TTAA	1 cut(s)	279
MslI	CAYNNNNRTG	3 cut(s)	324, 701, 835
MspR9I	CCNGG	1 cut(s)	483
MvaI	CCWGG	1 cut(s)	483
MwoI	GCNNNNNNNGC	2 cut(s)	261, 270
NdeII	GATC	3 cut(s)	445, 643, 690
NlaIII	CATG	3 cut(s)	219, 475, 706
NmeAIII	GCCGAG	1 cut(s)	236
NmuCI	GTSAC	2 cut(s)	494, 511
OliI	CACNNNNGTG	1 cut(s)	835
PaeR7I	CTCGAG	1 cut(s)	749
PaqCI	CACCTGC	1 cut(s)	499
PasI	CCCWGGG	1 cut(s)	482
PfeI	GAWTC	2 cut(s)	618, 770
PleI	GAGTC	3 cut(s)	238, 491, 760
PpsI	GAGTC	3 cut(s)	238, 491, 760
Psp6I	CCWGG	1 cut(s)	481
PspGI	CCWGG	1 cut(s)	481
PspXI	VCTCGAGB	1 cut(s)	749
RsaI	GTAC	1 cut(s)	169
RsaNI	GTAC	1 cut(s)	168
RseI	CAYNNNNRTG	3 cut(s)	324, 701, 835
SaqAI	TTAA	1 cut(s)	279
Sau3AI	GATC	3 cut(s)	445, 643, 690
SchI	GAGTC	3 cut(s)	238, 491, 761
ScrFI	CCNGG	1 cut(s)	483
SduI	GDGCHC	3 cut(s)	479, 544, 750
SfaNI	GCATC	3 cut(s)	25, 299, 802
Sfr274I	CTCGAG	1 cut(s)	749
SlaI	CTCGAG	1 cut(s)	749
SmiMI	CAYNNNNRTG	3 cut(s)	324, 701, 835
SmlI	CTYRAG	1 cut(s)	749
SmoI	CTYRAG	1 cut(s)	749
Sse9I	AATT	3 cut(s)	295, 340, 636
SsiI	CCGC	1 cut(s)	264
SspMI	CTAG	1 cut(s)	615
StyD4I	CCNGG	1 cut(s)	481
TaaI	ACNGT	1 cut(s)	586
TaqI	TCGA	1 cut(s)	750
TasI	AATT	3 cut(s)	295, 340, 636
TfiI	GAWTC	2 cut(s)	618, 770
Tru1I	TTAA	1 cut(s)	279
Tru9I	TTAA	1 cut(s)	279
TscAI	CASTG	5 cut(s)	27, 94, 169, 190, 538
TseFI	GTSAC	2 cut(s)	494, 511
Tsp45I	GTSAC	2 cut(s)	494, 511
TspDTI	ATGAA	1 cut(s)	595
TspGWI	ACGGA	2 cut(s)	477, 782
TspRI	CASTG	5 cut(s)	27, 94, 169, 190, 538
XhoI	CTCGAG	1 cut(s)	749
XspI	CTAG	1 cut(s)	615

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.