Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001439

Physical Location & Seq

Genomic Coordinates Reverse (-)

2403992 .. 2406049

Gene Structure 2058 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G07750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGGAGTTGGATCTTACACCTAAGTTGCCCAAGAAGGTTTACGGAGGAGATGGTGGATCTTACTCTGCCTGGTGCCCAGAGGAGTTGCCGATGCTCAAACAGGGTAACATTGGAGCCGCTAAGCTTGCTCTTGAGAAGAATGGCTTCGCTGTCCCTCGTTACTCTGATTCCTCTAAGGTCGCTTATGTTCTTCAAGGATCTGGAACTGCTGGAATTGTTCTCCCAGAGAAGGAGGAGAAGGTGATCGCAATCAAGCAAGGTGATTCGATTGCTCTTCCCTTTGGTGTGGTCACATGGTGGTTCAACAACGAGGATCCTGAGCTTGTTATCCTCTTCCTTGGTGAAACCCACAAGGGTCACAAAGCAGGGCAGTTCACTGAGTTCTATCTTACTGGCACAAACGGTATCTTCACTGGTTTCTCCACTGAGTTTGTTGGCAGAGCCTGGGACCTTGATGAGAACACCGTGAAGAAACTTGTTGGTTCTCAAACCGGTAATGGCATTGTGAAGCTTGATGCGGGCTTTAAGATGCCACAGCCCAAGGAGGAGAACCGTGCTGGGTTTGTCTTGAACTGTTTGGAGGCTCCTCTTGATGTAGACATCAAGGATGGAGGCAGGGTCGTTGTCTTGAACACCAAGAACCTTCCTTTGGTTGGAGAGGTTGGCTTTGGAGCTGATCTTGTTCGGATCGATGCACACTCCATGTGTTCGCCTGGTTTCTCTTGTGACTCTGCTCTTCAGGTGACTTACATTGTGGGTGGAAGTGGAAGAGTCCAGGTGGTTGGTGGTGATGGGAAAAGAGTTCTTGAGACCCATATCAAAGCTGGTTCTCTCTTCATTGTTCCAAGGTTCTTTGTGGTTTCTAAGATTGCTGATGCTGATGGCATGTCTTGGTTCTCCATTGTCACCACTCCTGATCCGATCTTCACACATTTGGCCGGGAATACATCGGTGTGGAAGTCTTTGTCCCCTGAGGTTTTGCAGGCAGCGTTTAAGGTGGCTCCGGAGGTGGAGAAGTCCTTCCGATCCACGAGGACTTCATCAGCCATTTTCTTCCCTCCTTCCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

356

Amino Acids

38.31

Weight (kDa)

5.83

Isoelectric Point (pI)

31.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	10 - 157	1.1e-27	Cupin
Cupin_1	PF00190	196 - 338	1.5e-25	Cupin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001439)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07750 AT2G28680
fragaria_vesca	FvH4_2g37390 FvH4_3g34830 FvH4_3g34840
malus_domestica	MD03G1100900.v1.1 MD11G1115000.v1.1
prunus_persica	Prupe.6G085800_v2.0.a1 Prupe.6G085900_v2.0.a1
pyrus_communis	pycom03g08290 pycom11g09650
rosa_chinensis	RchiOBHm_Chr5g0062671 RchiOBHm_Chr5g0062681 RchiOBHm_Chr6g0304301
rosa_laevigata	RLG00000004146 RLG00000004904 RLG00000010993 RLG00000035570 RLG00000035572
rosa_multiflora	Rmu_sc0006470.1_g000001 Rmu_ssc0000218.1_g000036 Rmu_ssc0000472.1_g000022 Rmu_ssc0000472.1_g000023 Rmu_ssc0000472.1_g000028
rosa_roxburghii	Rroxscaffold_1G00017940 Rroxscaffold_1G00017950 Rroxscaffold_3G00260780 Rroxscaffold_7G00163860
rosa_rugosa	Rorug05G0350900 Rorug05G0351000 Rorug06G0329800 Rorug06G0470100 Rorug06G0493800 Rorug07G0020700
rosa_samantha	Rh5AG411700 Rh5AG411900 Rh5BG425700 Rh5BG425900 Rh5CG449800 Rh5CG450000 Rh5DG439700 Rh5DG439800 Rh6AG443200 Rh6BG459200 Rh6CG456000 Rh6DG442700 Rh7BG075100 Rh7BG100100 Rh7BG148700
rosa_wichuraiana	Rw5G038710 Rw5G038720 Rw6G038460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	72
AccI	GTMKAC	1 cut(s)	597
AccIII	TCCGGA	1 cut(s)	1003
AciI	CCGC	2 cut(s)	117, 518
AclWI	GGATC	8 cut(s)	18, 64, 205, 308, 321, 695, 911, 1020
AcoI	YGGCCR	1 cut(s)	936
AcuI	CTGAAG	1 cut(s)	722
AdeI	CACNNNGTG	1 cut(s)	297
AfiI	CCNNNNNNNGG	3 cut(s)	229, 649, 653
AgeI	ACCGGT	1 cut(s)	491
AgsI	TTSAA	4 cut(s)	194, 304, 571, 631
AjnI	CCWGG	4 cut(s)	68, 443, 712, 774
AjuI	GAANNNNNNNTTGG	2 cut(s)	632, 664
AluBI	AGCT	5 cut(s)	124, 322, 511, 674, 824
AluI	AGCT	5 cut(s)	124, 322, 511, 674, 824
Alw26I	GTCTC	1 cut(s)	803
AlwI	GGATC	8 cut(s)	18, 64, 205, 308, 321, 695, 911, 1020
AlwNI	CAGNNNCTG	1 cut(s)	444
Aor13HI	TCCGGA	1 cut(s)	1003
AoxI	GGCC	1 cut(s)	936
ApeKI	GCWGC	1 cut(s)	986
AsiGI	ACCGGT	1 cut(s)	491
Asp700I	GAANNNNTTC	2 cut(s)	143, 1019
AspS9I	GGNCC	1 cut(s)	448
AsuC2I	CCSGG	1 cut(s)	940
AsuHPI	GGTGA	6 cut(s)	253, 272, 353, 754, 800, 898
AvaII	GGWCC	1 cut(s)	448
AxyI	CCTNAGG	1 cut(s)	972
BaeGI	GKGCMC	1 cut(s)	77
BamHI	GGATCC	1 cut(s)	313
BanI	GGYRCC	1 cut(s)	72
BauI	CACGAG	1 cut(s)	1030
BbvI	GCAGC	1 cut(s)	998
BccI	CCATC	4 cut(s)	44, 602, 785, 875
BciT130I	CCWGG	4 cut(s)	70, 445, 714, 776
BcnI	CCSGG	1 cut(s)	940
BcoDI	GTCTC	1 cut(s)	803
BisI	GCNGC	2 cut(s)	117, 987
BlpI	GCTNAGC	1 cut(s)	120
BlsI	GCNGC	2 cut(s)	118, 988
Bme1390I	CCNGG	5 cut(s)	70, 445, 714, 776, 940
Bme18I	GGWCC	1 cut(s)	448
BmgT120I	GGNCC	1 cut(s)	448
BmiI	GGNNCC	6 cut(s)	74, 115, 315, 449, 585, 1002
BmrFI	CCNGG	5 cut(s)	70, 445, 714, 776, 940
BmsI	GCATC	5 cut(s)	81, 505, 519, 682, 865
Bpu10I	CCTNAGC	1 cut(s)	318
Bpu1102I	GCTNAGC	1 cut(s)	120
BpuEI	CTTGAG	2 cut(s)	152, 827
BpuMI	CCSGG	1 cut(s)	940
Bsa29I	ATCGAT	1 cut(s)	690
BsaBI	GATNNNNATC	1 cut(s)	248
BsaI	GGTCTC	1 cut(s)	803
BsaJI	CCNNGG	4 cut(s)	337, 444, 540, 845
BsaWI	WCCGGW	2 cut(s)	491, 1003
BsaXI	ACNNNNNCTCC	2 cut(s)	603, 633
Bsc4I	CCNNNNNNNGG	3 cut(s)	229, 649, 653
Bse118I	RCCGGY	1 cut(s)	491
Bse1I	ACTGG	2 cut(s)	397, 418
Bse21I	CCTNAGG	1 cut(s)	972
Bse8I	GATNNNNATC	1 cut(s)	248
BseAI	TCCGGA	1 cut(s)	1003
BseBI	CCWGG	4 cut(s)	70, 445, 714, 776
BseCI	ATCGAT	1 cut(s)	690
BseDI	CCNNGG	4 cut(s)	337, 444, 540, 845
BseGI	GGATG	1 cut(s)	613
BseJI	GATNNNNATC	1 cut(s)	248
BseLI	CCNNNNNNNGG	3 cut(s)	229, 649, 653
BseMII	CTCAG	4 cut(s)	309, 369, 417, 963
BseNI	ACTGG	2 cut(s)	397, 418
BseRI	GAGGAG	5 cut(s)	60, 95, 248, 560, 576
BseSI	GKGCMC	1 cut(s)	77
BseXI	GCAGC	1 cut(s)	998
BseYI	CCCAGC	1 cut(s)	557
BshFI	GGCC	1 cut(s)	938
BshNI	GGYRCC	1 cut(s)	72
BshTI	ACCGGT	1 cut(s)	491
BshVI	ATCGAT	1 cut(s)	690
BsiSI	CCGG	3 cut(s)	492, 939, 1004
BslFI	GGGAC	3 cut(s)	137, 461, 952
BslI	CCNNNNNNNGG	3 cut(s)	229, 649, 653
BsmAI	GTCTC	1 cut(s)	803
BsmFI	GGGAC	3 cut(s)	137, 461, 952
BsnI	GGCC	1 cut(s)	938
Bso31I	GGTCTC	1 cut(s)	803
Bsp1286I	GDGCHC	1 cut(s)	77
Bsp13I	TCCGGA	1 cut(s)	1003
Bsp1720I	GCTNAGC	1 cut(s)	120
BspACI	CCGC	2 cut(s)	117, 518
BspANI	GGCC	1 cut(s)	938
BspCNI	CTCAG	4 cut(s)	310, 370, 418, 964
BspDI	ATCGAT	1 cut(s)	690
BspEI	TCCGGA	1 cut(s)	1003
BspLI	GGNNCC	6 cut(s)	74, 115, 315, 449, 585, 1002
BspPI	GGATC	8 cut(s)	18, 64, 205, 308, 321, 695, 911, 1020
BspQI	GCTCTTC	2 cut(s)	279, 741
BspT107I	GGYRCC	1 cut(s)	72
BspTNI	GGTCTC	1 cut(s)	803
BsrFI	RCCGGY	1 cut(s)	491
BsrI	ACTGG	2 cut(s)	397, 418
BssAI	RCCGGY	1 cut(s)	491
BssECI	CCNNGG	4 cut(s)	337, 444, 540, 845
BssSI	CACGAG	1 cut(s)	1030
BssT1I	CCWWGG	3 cut(s)	337, 540, 845
Bst2BI	CACGAG	1 cut(s)	1030
Bst2UI	CCWGG	4 cut(s)	70, 445, 714, 776
Bst4CI	ACNGT	4 cut(s)	404, 466, 554, 575
Bst6I	CTCTTC	5 cut(s)	279, 338, 741, 763, 839
BstC8I	GCNNGC	3 cut(s)	126, 520, 984
BstDEI	CTNAG	8 cut(s)	21, 120, 174, 318, 378, 426, 864, 972
BstF5I	GGATG	1 cut(s)	613
BstMAI	GTCTC	1 cut(s)	803
BstMWI	GCNNNNNNNGC	1 cut(s)	125
BstNI	CCWGG	4 cut(s)	70, 445, 714, 776
BstNSI	RCATGY	1 cut(s)	889
BstSCI	CCNGG	5 cut(s)	68, 443, 712, 774, 938
BstSLI	GKGCMC	1 cut(s)	77
BstV1I	GCAGC	1 cut(s)	998
BstX2I	RGATCY	4 cut(s)	10, 56, 197, 313
BstXI	CCANNNNNNTGG	1 cut(s)	782
BstYI	RGATCY	4 cut(s)	10, 56, 197, 313
Bsu15I	ATCGAT	1 cut(s)	690
Bsu36I	CCTNAGG	1 cut(s)	972
BsuRI	GGCC	1 cut(s)	938
BsuTUI	ATCGAT	1 cut(s)	690
BtsCI	GGATG	1 cut(s)	613
BtsIMutI	CAGTG	3 cut(s)	375, 411, 423
Cac8I	GCNNGC	3 cut(s)	126, 520, 984
CaiI	CAGNNNCTG	1 cut(s)	444
Cfr10I	RCCGGY	1 cut(s)	491
Cfr13I	GGNCC	1 cut(s)	448
ClaI	ATCGAT	1 cut(s)	690
CspAI	ACCGGT	1 cut(s)	491
CspCI	CAANNNNNGTGG	2 cut(s)	412, 447
CviAII	CATG	3 cut(s)	294, 703, 886
DdeI	CTNAG	8 cut(s)	21, 120, 174, 318, 378, 426, 864, 972
DraIII	CACNNNGTG	1 cut(s)	297
EaeI	YGGCCR	1 cut(s)	936
Eam1104I	CTCTTC	5 cut(s)	279, 338, 741, 763, 839
EarI	CTCTTC	5 cut(s)	279, 338, 741, 763, 839
Eco130I	CCWWGG	3 cut(s)	337, 540, 845
Eco31I	GGTCTC	1 cut(s)	803
Eco47I	GGWCC	1 cut(s)	448
Eco57I	CTGAAG	1 cut(s)	722
Eco81I	CCTNAGG	1 cut(s)	972
EcoO109I	RGGNCCY	1 cut(s)	448
EcoRII	CCWGG	4 cut(s)	68, 443, 712, 774
EcoT14I	CCWWGG	3 cut(s)	337, 540, 845
ErhI	CCWWGG	3 cut(s)	337, 540, 845
FaeI	CATG	3 cut(s)	297, 706, 889
FaiI	YATR	5 cut(s)	186, 295, 704, 816, 887
FalI	AAGNNNNNCTT	2 cut(s)	128, 160
FaqI	GGGAC	3 cut(s)	137, 461, 952
FatI	CATG	3 cut(s)	293, 702, 885
FauI	CCCGC	1 cut(s)	511
FblI	GTMKAC	1 cut(s)	597
Fnu4HI	GCNGC	2 cut(s)	117, 987
FokI	GGATG	1 cut(s)	620
Fsp4HI	GCNGC	2 cut(s)	117, 987
GluI	GCNGC	2 cut(s)	117, 987
GsaI	CCCAGC	1 cut(s)	561
HaeIII	GGCC	1 cut(s)	938
HapII	CCGG	3 cut(s)	492, 939, 1004
Hin1II	CATG	3 cut(s)	297, 706, 889
HindIII	AAGCTT	2 cut(s)	122, 509
HinfI	GANTC	4 cut(s)	167, 263, 728, 771
HpaII	CCGG	3 cut(s)	492, 939, 1004
HphI	GGTGA	6 cut(s)	253, 272, 353, 754, 800, 898
Hpy166II	GTNNAC	3 cut(s)	40, 375, 598
Hpy188I	TCNGA	4 cut(s)	166, 687, 921, 1025
Hpy188III	TCNNGA	9 cut(s)	131, 201, 317, 568, 590, 628, 806, 914, 1004
Hpy8I	GTNNAC	3 cut(s)	40, 375, 598
HpyAV	CCTTC	6 cut(s)	28, 223, 232, 653, 1030, 1071
HpyCH4III	ACNGT	4 cut(s)	404, 466, 554, 575
HpyCH4V	TGCA	2 cut(s)	695, 982
HpyF10VI	GCNNNNNNNGC	1 cut(s)	125
HpyF3I	CTNAG	8 cut(s)	21, 120, 174, 318, 378, 426, 864, 972
Hsp92II	CATG	3 cut(s)	297, 706, 889
Kpn2I	TCCGGA	1 cut(s)	1003
LguI	GCTCTTC	2 cut(s)	279, 741
LmnI	GCTCC	4 cut(s)	113, 589, 671, 1006
Lsp1109I	GCAGC	1 cut(s)	998
LweI	GCATC	5 cut(s)	81, 505, 519, 682, 865
MaeIII	GTNAC	7 cut(s)	104, 158, 289, 356, 725, 742, 904
MflI	RGATCY	4 cut(s)	10, 56, 197, 313
MhlI	GDGCHC	1 cut(s)	77
MluCI	AATT	1 cut(s)	213
MlyI	GAGTC	2 cut(s)	722, 780
MmeI	TCCRAC	1 cut(s)	634
MroI	TCCGGA	1 cut(s)	1003
MroXI	GAANNNNTTC	2 cut(s)	143, 1019
MseI	TTAA	2 cut(s)	525, 993
MslI	CAYNNNNRTG	1 cut(s)	952
MspI	CCGG	3 cut(s)	492, 939, 1004
MspR9I	CCNGG	5 cut(s)	70, 445, 714, 776, 940
MvaI	CCWGG	4 cut(s)	70, 445, 714, 776
MwoI	GCNNNNNNNGC	1 cut(s)	125
NciI	CCSGG	1 cut(s)	940
NlaIII	CATG	3 cut(s)	297, 706, 889
NlaIV	GGNNCC	6 cut(s)	74, 115, 315, 449, 585, 1002
NmuCI	GTSAC	5 cut(s)	289, 356, 725, 742, 904
NspI	RCATGY	1 cut(s)	889
PciSI	GCTCTTC	2 cut(s)	279, 741
PdmI	GAANNNNTTC	2 cut(s)	143, 1019
PfeI	GAWTC	2 cut(s)	167, 263
PinAI	ACCGGT	1 cut(s)	491
PkrI	GCNGC	2 cut(s)	118, 988
PleI	GAGTC	2 cut(s)	722, 779
PpsI	GAGTC	2 cut(s)	722, 779
PpuMI	RGGWCCY	1 cut(s)	448
Psp5II	RGGWCCY	1 cut(s)	448
Psp6I	CCWGG	4 cut(s)	68, 443, 712, 774
PspFI	CCCAGC	1 cut(s)	557
PspGI	CCWGG	4 cut(s)	68, 443, 712, 774
PspN4I	GGNNCC	6 cut(s)	74, 115, 315, 449, 585, 1002
PspPI	GGNCC	1 cut(s)	448
PspPPI	RGGWCCY	1 cut(s)	448
PstNI	CAGNNNCTG	1 cut(s)	444
PsuI	RGATCY	4 cut(s)	10, 56, 197, 313
RseI	CAYNNNNRTG	1 cut(s)	952
SapI	GCTCTTC	2 cut(s)	279, 741
SaqAI	TTAA	2 cut(s)	525, 993
SatI	GCNGC	2 cut(s)	117, 987
Sau96I	GGNCC	1 cut(s)	448
SchI	GAGTC	2 cut(s)	722, 780
ScrFI	CCNGG	5 cut(s)	70, 445, 714, 776, 940
SduI	GDGCHC	1 cut(s)	77
SfaNI	GCATC	5 cut(s)	81, 505, 519, 682, 865
SinI	GGWCC	1 cut(s)	448
SmiMI	CAYNNNNRTG	1 cut(s)	952
SmlI	CTYRAG	2 cut(s)	131, 806
SmoI	CTYRAG	2 cut(s)	131, 806
Sse9I	AATT	1 cut(s)	213
SsiI	CCGC	2 cut(s)	117, 518
StyD4I	CCNGG	5 cut(s)	68, 443, 712, 774, 938
StyI	CCWWGG	3 cut(s)	337, 540, 845
TaaI	ACNGT	4 cut(s)	404, 466, 554, 575
TaqI	TCGA	2 cut(s)	266, 690
TasI	AATT	1 cut(s)	213
TauI	GCSGC	1 cut(s)	119
TfiI	GAWTC	2 cut(s)	167, 263
Tru1I	TTAA	2 cut(s)	525, 993
Tru9I	TTAA	2 cut(s)	525, 993
TscAI	CASTG	3 cut(s)	382, 418, 430
TseFI	GTSAC	5 cut(s)	289, 356, 725, 742, 904
TseI	GCWGC	1 cut(s)	986
Tsp45I	GTSAC	5 cut(s)	289, 356, 725, 742, 904
TspDTI	ATGAA	2 cut(s)	826, 1029
TspGWI	ACGGA	1 cut(s)	57
TspRI	CASTG	3 cut(s)	382, 418, 430
VpaK11BI	GGWCC	1 cut(s)	448
XceI	RCATGY	1 cut(s)	889
XcmI	CCANNNNNNNNNTGG	2 cut(s)	782, 821
XmiI	GTMKAC	1 cut(s)	597
XmnI	GAANNNNTTC	2 cut(s)	143, 1019

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.