RLG00000035572

Glutelin type-A

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0001439
Physical Location & Seq
Forward (+)
68850398 .. 68852634
2237 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035572

Sequence Viewer

Length: 1068 bp
ATGGAGATTGATCTGACACCAAGGTTGGCTAAGAAGGTTTATGGAGGAGATGGTGGTTCCTTCTCTGCCTGGTCCCCGTCGGAGCTTCCCATGCTCCGGGAAGGTGACATCGGAGCTGCCAAGCTCTCTCTGGAGAAGGACGGCTTTGCTCTCCCCAGTTACTCTGACTCTGCCAGAGTTGCTTATGTCCTTCAAGGTAATGGAGTAGTCGGAATTGTTCTGCCAGAGAAAGAAGAAAAAGTTCTTCCAGTGAAGAAGGGTGATGCCATTGCCCTGCCTTTTGGAGTTATCACTTGGTGGTACAACAAGGAGGACACTGAGTTTGTGGTTCTTTTCTTGGGTGATACCAAAACAGCTCACAAACGGGGAGAGTTCACCGACTTCTATCTCAATGGTTCTAATGGCATTTTCACCGGCTTCTCAACTGAGTTTGTCGGTCGAGCATGGGATTTGGAGGAGAGTGTTGTAAAGACTCTTGTTGGCAAGCAAACTGGCAAGGGCATTGTTAAGTTGGGGGGAGCTAATTTGCCTGAACCAAAGAAGGAACATAGAGATGGGATGACATTGAACTGCGAAGAGGCTCCTCTTGATGTTGATATTAAGGGCGGTGGAAGAGTTGTTGTTTTGAATACTAAGAACCTTCCTTTGGTTGGTGAGGTTGGCCTTGGTGCTGATCTTGTTAGGTTGGATGGAAGTGCTATGTGCTCCCCTGGGTTTTCTTGTGACTCTGCATTGCAGGTGACTTACATTGTTAGGGGTAGTGGCCGTGTGCAAGTTGTTGGTGTCAATGGGAAGAGGGTATTGGAAACAACTGTTACAGCTGGCAACTTGTTCATCGTTCCTCGATTCTTTGTCGTTTCAAAGATTGCTGATCCAGAAGGCTTGGAATGGTTCTCCATCATCACCACTCCCAACCCAATATTCACTCATTTGGCTGGAAGTATTGGAGCTTGGAAGGCGTTATCTCCTCAAGTGCTTGAGGCTTCATTCAAAGTGGATTCAGACACTGAGAAACTATTCCGATCAAAGAGAACTTCTGATGCAATCTTCTTCCCTCCTCCAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

356

Amino Acids

38.29

Weight (kDa)

5.82

Isoelectric Point (pI)

27.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 11 - 156 2.1e-23 Cupin
Cupin_1 PF00190 198 - 337 2.2e-23 Cupin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 727
Acc36I ACCTGC 1 cut(s) 727
AciI CCGC 1 cut(s) 606
AclWI GGATC 1 cut(s) 866
AcoI YGGCCR 1 cut(s) 763
AdeI CACNNNGTG 1 cut(s) 297
AfaI GTAC 1 cut(s) 302
AfiI CCNNNNNNNGG 3 cut(s) 96, 646, 650
AgsI TTSAA 5 cut(s) 194, 568, 628, 861, 991
AjnI CCWGG 2 cut(s) 68, 709
AjuI GAANNNNNNNTTGG 6 cut(s) 629, 661, 785, 817, 905, 937
AluBI AGCT 7 cut(s) 85, 116, 124, 356, 521, 821, 950
AluI AGCT 7 cut(s) 85, 116, 124, 356, 521, 821, 950
Alw21I GWGCWC 1 cut(s) 707
AlwI GGATC 1 cut(s) 866
AlwNI CAGNNNCTG 1 cut(s) 1007
AoxI GGCC 2 cut(s) 661, 763
ApeKI GCWGC 1 cut(s) 116
ArsI GACNNNNNNTTYG 2 cut(s) 305, 337
Asp700I GAANNNNTTC 2 cut(s) 240, 1016
AspS9I GGNCC 1 cut(s) 72
AsuC2I CCSGG 1 cut(s) 98
AsuHPI GGTGA 8 cut(s) 116, 272, 353, 367, 403, 665, 751, 895
AvaII GGWCC 1 cut(s) 72
Bbv12I GWGCWC 1 cut(s) 707
BbvI GCAGC 1 cut(s) 103
BccI CCATC 4 cut(s) 44, 548, 683, 905
BceAI ACGGC 2 cut(s) 157, 750
BciT130I CCWGG 2 cut(s) 70, 711
BcnI CCSGG 1 cut(s) 98
BfuAI ACCTGC 1 cut(s) 727
BisI GCNGC 1 cut(s) 117
BlsI GCNGC 1 cut(s) 118
Bme1390I CCNGG 3 cut(s) 70, 98, 711
Bme18I GGWCC 1 cut(s) 72
BmgT120I GGNCC 1 cut(s) 72
BmiI GGNNCC 3 cut(s) 58, 74, 582
BmrFI CCNGG 3 cut(s) 70, 98, 711
BmrI ACTGGG 1 cut(s) 150
BmsI GCATC 2 cut(s) 253, 1030
BmuI ACTGGG 1 cut(s) 150
BpmI CTGGAG 1 cut(s) 152
BpuEI CTTGAG 2 cut(s) 954, 998
BpuMI CCSGG 1 cut(s) 98
BsaJI CCNNGG 4 cut(s) 20, 664, 709, 710
Bsc4I CCNNNNNNNGG 3 cut(s) 96, 646, 650
Bse118I RCCGGY 1 cut(s) 413
Bse1I ACTGG 3 cut(s) 156, 248, 496
Bse3DI GCAATG 2 cut(s) 267, 731
BseBI CCWGG 2 cut(s) 70, 711
BseDI CCNNGG 4 cut(s) 20, 664, 709, 710
BseGI GGATG 2 cut(s) 564, 694
BseLI CCNNNNNNNGG 3 cut(s) 96, 646, 650
BseMI GCAATG 2 cut(s) 267, 731
BseMII CTCAG 3 cut(s) 309, 417, 999
BseNI ACTGG 3 cut(s) 156, 248, 496
BseRI GAGGAG 5 cut(s) 60, 470, 573, 957, 1047
BseXI GCAGC 1 cut(s) 103
Bsh1285I CGRYCG 1 cut(s) 439
BshFI GGCC 2 cut(s) 663, 765
BsiEI CGRYCG 1 cut(s) 439
BsiHKAI GWGCWC 1 cut(s) 707
BsiSI CCGG 2 cut(s) 97, 414
BslFI GGGAC 1 cut(s) 58
BslI CCNNNNNNNGG 3 cut(s) 96, 646, 650
BsmFI GGGAC 1 cut(s) 58
BsnI GGCC 2 cut(s) 663, 765
Bsp1286I GDGCHC 1 cut(s) 707
Bsp143I GATC 4 cut(s) 10, 673, 871, 1022
BspACI CCGC 1 cut(s) 606
BspANI GGCC 2 cut(s) 663, 765
BspCNI CTCAG 3 cut(s) 310, 418, 1000
BspLI GGNNCC 3 cut(s) 58, 74, 582
BspMI ACCTGC 1 cut(s) 727
BspPI GGATC 1 cut(s) 866
BsrDI GCAATG 2 cut(s) 267, 731
BsrFI RCCGGY 1 cut(s) 413
BsrI ACTGG 3 cut(s) 156, 248, 496
BssAI RCCGGY 1 cut(s) 413
BssECI CCNNGG 4 cut(s) 20, 664, 709, 710
BssMI GATC 4 cut(s) 10, 673, 871, 1022
BssT1I CCWWGG 2 cut(s) 20, 664
Bst2UI CCWGG 2 cut(s) 70, 711
Bst4CI ACNGT 1 cut(s) 814
Bst6I CTCTTC 3 cut(s) 570, 607, 788
BstC8I GCNNGC 2 cut(s) 485, 823
BstDEI CTNAG 5 cut(s) 30, 318, 426, 633, 1008
BstF5I GGATG 2 cut(s) 564, 694
BstKTI GATC 4 cut(s) 13, 676, 874, 1025
BstMBI GATC 4 cut(s) 10, 673, 871, 1022
BstMCI CGRYCG 1 cut(s) 439
BstMWI GCNNNNNNNGC 3 cut(s) 91, 179, 956
BstNI CCWGG 2 cut(s) 70, 711
BstSCI CCNGG 3 cut(s) 68, 96, 709
BstV1I GCAGC 1 cut(s) 103
BsuRI GGCC 2 cut(s) 663, 765
BtsCI GGATG 2 cut(s) 564, 694
BtsIMutI CAGTG 3 cut(s) 255, 315, 1005
BveI ACCTGC 1 cut(s) 727
Cac8I GCNNGC 2 cut(s) 485, 823
CaiI CAGNNNCTG 1 cut(s) 1007
Cfr10I RCCGGY 1 cut(s) 413
Cfr13I GGNCC 1 cut(s) 72
Csp6I GTAC 1 cut(s) 301
CviAII CATG 2 cut(s) 91, 444
CviQI GTAC 1 cut(s) 301
DdeI CTNAG 5 cut(s) 30, 318, 426, 633, 1008
DpnI GATC 4 cut(s) 12, 675, 873, 1024
DpnII GATC 4 cut(s) 10, 673, 871, 1022
DraIII CACNNNGTG 1 cut(s) 297
EaeI YGGCCR 1 cut(s) 763
Eam1104I CTCTTC 3 cut(s) 570, 607, 788
EarI CTCTTC 3 cut(s) 570, 607, 788
Eco130I CCWWGG 2 cut(s) 20, 664
Eco47I GGWCC 1 cut(s) 72
EcoRII CCWGG 2 cut(s) 68, 709
EcoT14I CCWWGG 2 cut(s) 20, 664
ErhI CCWWGG 2 cut(s) 20, 664
FaeI CATG 2 cut(s) 94, 447
FaiI YATR 6 cut(s) 42, 92, 186, 445, 549, 701
FalI AAGNNNNNCTT 2 cut(s) 128, 160
FaqI GGGAC 1 cut(s) 58
FatI CATG 2 cut(s) 90, 443
Fnu4HI GCNGC 1 cut(s) 117
FokI GGATG 2 cut(s) 571, 701
Fsp4HI GCNGC 1 cut(s) 117
GluI GCNGC 1 cut(s) 117
GsuI CTGGAG 1 cut(s) 152
HaeIII GGCC 2 cut(s) 663, 765
HapII CCGG 2 cut(s) 97, 414
Hin1II CATG 2 cut(s) 94, 447
HinfI GANTC 5 cut(s) 167, 472, 725, 846, 998
HpaII CCGG 2 cut(s) 97, 414
HphI GGTGA 8 cut(s) 116, 272, 353, 367, 403, 665, 751, 895
Hpy166II GTNNAC 1 cut(s) 375
Hpy188I TCNGA 8 cut(s) 15, 82, 113, 166, 212, 1003, 1022, 1039
Hpy188III TCNNGA 3 cut(s) 131, 587, 875
Hpy8I GTNNAC 1 cut(s) 375
Hpy99I CGWCG 1 cut(s) 82
HpyCH4III ACNGT 1 cut(s) 814
HpyCH4V TGCA 4 cut(s) 731, 736, 772, 1043
HpyF10VI GCNNNNNNNGC 3 cut(s) 91, 179, 956
HpyF3I CTNAG 5 cut(s) 30, 318, 426, 633, 1008
Hsp92II CATG 2 cut(s) 94, 447
Kzo9I GATC 4 cut(s) 10, 673, 871, 1022
LmnI GCTCC 7 cut(s) 82, 99, 113, 518, 586, 710, 947
Lsp1109I GCAGC 1 cut(s) 103
LweI GCATC 2 cut(s) 253, 1030
MaeIII GTNAC 5 cut(s) 104, 158, 722, 739, 814
MalI GATC 4 cut(s) 12, 675, 873, 1024
MboI GATC 4 cut(s) 10, 673, 871, 1022
MboII GAAGA 8 cut(s) 236, 245, 265, 587, 624, 805, 1039, 1042
MhlI GDGCHC 1 cut(s) 707
MluCI AATT 2 cut(s) 213, 523
MlyI GAGTC 3 cut(s) 161, 466, 719
MmeI TCCRAC 3 cut(s) 60, 190, 666
MroXI GAANNNNTTC 2 cut(s) 240, 1016
MseI TTAA 2 cut(s) 507, 600
MslI CAYNNNNRTG 1 cut(s) 552
MspA1I CMGCKG 1 cut(s) 821
MspI CCGG 2 cut(s) 97, 414
MspR9I CCNGG 3 cut(s) 70, 98, 711
MvaI CCWGG 2 cut(s) 70, 711
MwoI GCNNNNNNNGC 3 cut(s) 91, 179, 956
NciI CCSGG 1 cut(s) 98
NdeII GATC 4 cut(s) 10, 673, 871, 1022
NlaIII CATG 2 cut(s) 94, 447
NlaIV GGNNCC 3 cut(s) 58, 74, 582
NmuCI GTSAC 3 cut(s) 104, 722, 739
PaqCI CACCTGC 1 cut(s) 727
PasI CCCWGGG 1 cut(s) 710
PdmI GAANNNNTTC 2 cut(s) 240, 1016
PfeI GAWTC 2 cut(s) 846, 998
PfoI TCCNGGA 1 cut(s) 96
PkrI GCNGC 1 cut(s) 118
PleI GAGTC 3 cut(s) 161, 466, 719
PpsI GAGTC 3 cut(s) 161, 466, 719
Psp6I CCWGG 2 cut(s) 68, 709
PspGI CCWGG 2 cut(s) 68, 709
PspN4I GGNNCC 3 cut(s) 58, 74, 582
PspPI GGNCC 1 cut(s) 72
PstNI CAGNNNCTG 1 cut(s) 1007
PvuII CAGCTG 1 cut(s) 821
RsaI GTAC 1 cut(s) 302
RsaNI GTAC 1 cut(s) 301
RseI CAYNNNNRTG 1 cut(s) 552
SaqAI TTAA 2 cut(s) 507, 600
SatI GCNGC 1 cut(s) 117
Sau3AI GATC 4 cut(s) 10, 673, 871, 1022
Sau96I GGNCC 1 cut(s) 72
SchI GAGTC 3 cut(s) 161, 466, 719
ScrFI CCNGG 3 cut(s) 70, 98, 711
SduI GDGCHC 1 cut(s) 707
SfaNI GCATC 2 cut(s) 253, 1030
SinI GGWCC 1 cut(s) 72
SmiMI CAYNNNNRTG 1 cut(s) 552
SmlI CTYRAG 2 cut(s) 969, 977
SmoI CTYRAG 2 cut(s) 969, 977
Sse9I AATT 2 cut(s) 213, 523
SsiI CCGC 1 cut(s) 606
SspI AATATT 1 cut(s) 921
StyD4I CCNGG 3 cut(s) 68, 96, 709
StyI CCWWGG 2 cut(s) 20, 664
TaaI ACNGT 1 cut(s) 814
TaqI TCGA 2 cut(s) 439, 844
TaqII GACCGA 1 cut(s) 425
TasI AATT 2 cut(s) 213, 523
TfiI GAWTC 2 cut(s) 846, 998
Tru1I TTAA 2 cut(s) 507, 600
Tru9I TTAA 2 cut(s) 507, 600
TscAI CASTG 3 cut(s) 255, 322, 1012
TseFI GTSAC 3 cut(s) 104, 722, 739
TseI GCWGC 1 cut(s) 116
Tsp45I GTSAC 3 cut(s) 104, 722, 739
TspDTI ATGAA 2 cut(s) 823, 975
TspRI CASTG 3 cut(s) 255, 322, 1012
VpaK11BI GGWCC 1 cut(s) 72
XcmI CCANNNNNNNNNTGG 1 cut(s) 127
XmnI GAANNNNTTC 2 cut(s) 240, 1016
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.