Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0001439

Physical Location & Seq

Genomic Coordinates Forward (+)

5774473 .. 5777037

Gene Structure 2565 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G085800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGGAGATTGATCTGTCACCAAAGTTGGCCAAGAAGGTGTACGGTGGAGATGGTGGGTCCTACTTTGCTTGGTCCCCATCTGAGCTTCCCATGCTCCGTGAAGGTAACATTGGCGCTGCCAAGCTTGCTCTTGAGAAGAATGGGTTTGCTCTCCCCAAGTACTCTGATTCTGCCCAGGTCGCTTATGTCCTCCAAGGTGCTGGTGTAGTTGGAATTGTCCTCCCTGAGAAGGAGGAGAAGGTTCTTCCAGTTAAGAAGGGTGATGCTATTGCCCTCCCATTTGGAGTTGTTACTTGGTGGTACAACAAGGAGGACACTGAGTTTGTAGTCCTTTTCTTGGGTGATACTTCAAAAGCCCACAAGAGGGGTGAGTTTACTGACTTTTATCTGAATGGCTCCAATGGCATTTTCACTGGCTTCTCAACTGAGTTTGTCGGTCGAGCATGGGATTTAGAGGAGGATATTGCGAAGACCCTTGTTAGCAAGCAATCTGGTAAGGGCATAGTTAAGGTTTGTGGAGCTAACTTGCCTGAACCAAAGAAGGAACACCGAGATGGCATGACATTGAACTGTGAAGAGGCTCCTCTGGATGTTGACATTAAGAAAGGTGGAAGAGTTGTTGTGCTGAACACTAAAAACCTTCCTTTGGTTGGTGAGGTTGGGCTTGGTGCTGACCTTGTTAGGTTGGATGGAAGTGCTATGTGCTCCCCAGGATTCTCTTGTGACTCTGCCCTGCAGGTGACTTATATTGTTAGGGGCAGTGGCCGTGTCCAAGTTGTTGGAGTCGACGGTAAGAGGGTCTTGGAAACAACCATCAAAGCTGGTAATTTGTTCATCGTTCCGAGGTTCTTTGTTGTTTCAAAGATCGCTGATCCAGAAGGCTTGGAATGGTTTTCTATCATCACTACTCCCAATCCCATATTCACCCACTTGGCTGGAAGCATTGGTGTTTGGAAGGCTTTGTCTCCTCAGGTGCTTGAGGCTGCCTTCAATGTGGATTCGGCTACAGAGAAACTTTTCCGATCGAAGAGGACTTCTGATGCAATCTTCTTCCCCCCACCCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

356

Amino Acids

38.36

Weight (kDa)

6.06

Isoelectric Point (pI)

31.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001439)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07750 AT2G28680
fragaria_vesca	FvH4_2g37390 FvH4_3g34830 FvH4_3g34840
malus_domestica	MD03G1100900.v1.1 MD11G1115000.v1.1
prunus_persica	Prupe.6G085800_v2.0.a1 Prupe.6G085900_v2.0.a1
pyrus_communis	pycom03g08290 pycom11g09650
rosa_chinensis	RchiOBHm_Chr5g0062671 RchiOBHm_Chr5g0062681 RchiOBHm_Chr6g0304301
rosa_laevigata	RLG00000004146 RLG00000004904 RLG00000010993 RLG00000035570 RLG00000035572
rosa_multiflora	Rmu_sc0006470.1_g000001 Rmu_ssc0000218.1_g000036 Rmu_ssc0000472.1_g000022 Rmu_ssc0000472.1_g000023 Rmu_ssc0000472.1_g000028
rosa_roxburghii	Rroxscaffold_1G00017940 Rroxscaffold_1G00017950 Rroxscaffold_3G00260780 Rroxscaffold_7G00163860
rosa_rugosa	Rorug05G0350900 Rorug05G0351000 Rorug06G0329800 Rorug06G0470100 Rorug06G0493800 Rorug07G0020700
rosa_samantha	Rh5AG411700 Rh5AG411900 Rh5BG425700 Rh5BG425900 Rh5CG449800 Rh5CG450000 Rh5DG439700 Rh5DG439800 Rh6AG443200 Rh6BG459200 Rh6CG456000 Rh6DG442700 Rh7BG075100 Rh7BG100100 Rh7BG148700
rosa_wichuraiana	Rw5G038710 Rw5G038720 Rw6G038460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	727
Acc36I	ACCTGC	1 cut(s)	727
AccI	GTMKAC	1 cut(s)	786
AclWI	GGATC	1 cut(s)	866
AcoI	YGGCCR	2 cut(s)	27, 763
AfaI	GTAC	3 cut(s)	41, 161, 302
AfiI	CCNNNNNNNGG	6 cut(s)	229, 337, 363, 364, 646, 650
AgsI	TTSAA	4 cut(s)	351, 568, 861, 991
AjnI	CCWGG	2 cut(s)	174, 709
AjuI	GAANNNNNNNTTGG	6 cut(s)	93, 125, 392, 424, 905, 937
AluBI	AGCT	4 cut(s)	85, 124, 521, 821
AluI	AGCT	4 cut(s)	85, 124, 521, 821
Alw21I	GWGCWC	1 cut(s)	707
Alw26I	GTCTC	1 cut(s)	969
AlwI	GGATC	1 cut(s)	866
AoxI	GGCC	2 cut(s)	27, 763
ApeKI	GCWGC	2 cut(s)	116, 983
ArsI	GACNNNNNNTTYG	2 cut(s)	305, 337
Asp700I	GAANNNNTTC	1 cut(s)	1016
AspLEI	GCGC	1 cut(s)	116
AspS9I	GGNCC	2 cut(s)	57, 72
AsuHPI	GGTGA	7 cut(s)	9, 272, 353, 380, 665, 751, 916
AvaII	GGWCC	2 cut(s)	57, 72
AxyI	CCTNAGG	1 cut(s)	969
BalI	TGGCCA	1 cut(s)	29
BbsI	GAAGAC	1 cut(s)	476
Bbv12I	GWGCWC	1 cut(s)	707
BbvI	GCAGC	2 cut(s)	103, 970
BccI	CCATC	5 cut(s)	44, 85, 548, 683, 821
BceAI	ACGGC	1 cut(s)	750
BciT130I	CCWGG	2 cut(s)	176, 711
BcoDI	GTCTC	1 cut(s)	969
BfmI	CTRYAG	2 cut(s)	734, 1005
BfoI	RGCGCY	1 cut(s)	117
BfuAI	ACCTGC	1 cut(s)	727
BisI	GCNGC	2 cut(s)	117, 984
BlsI	GCNGC	2 cut(s)	118, 985
BmcAI	AGTACT	1 cut(s)	161
Bme1390I	CCNGG	2 cut(s)	176, 711
Bme18I	GGWCC	2 cut(s)	57, 72
BmgT120I	GGNCC	2 cut(s)	57, 72
BmiI	GGNNCC	4 cut(s)	58, 74, 397, 582
BmrFI	CCNGG	2 cut(s)	176, 711
BmsI	GCATC	2 cut(s)	253, 1030
BpiI	GAAGAC	1 cut(s)	476
BpuEI	CTTGAG	2 cut(s)	152, 998
BsaJI	CCNNGG	4 cut(s)	174, 193, 709, 842
Bsc4I	CCNNNNNNNGG	6 cut(s)	229, 337, 363, 364, 646, 650
Bse1I	ACTGG	2 cut(s)	248, 418
Bse21I	CCTNAGG	1 cut(s)	969
BseBI	CCWGG	2 cut(s)	176, 711
BseDI	CCNNGG	4 cut(s)	174, 193, 709, 842
BseGI	GGATG	2 cut(s)	595, 694
BseLI	CCNNNNNNNGG	6 cut(s)	229, 337, 363, 364, 646, 650
BseMII	CTCAG	5 cut(s)	72, 216, 309, 417, 983
BseNI	ACTGG	2 cut(s)	248, 418
BseRI	GAGGAG	4 cut(s)	248, 470, 573, 957
BseXI	GCAGC	2 cut(s)	103, 970
Bsh1285I	CGRYCG	2 cut(s)	439, 1025
BshFI	GGCC	2 cut(s)	29, 765
BsiEI	CGRYCG	2 cut(s)	439, 1025
BsiHKAI	GWGCWC	1 cut(s)	707
BslFI	GGGAC	1 cut(s)	58
BslI	CCNNNNNNNGG	6 cut(s)	229, 337, 363, 364, 646, 650
BsmAI	GTCTC	1 cut(s)	969
BsmFI	GGGAC	1 cut(s)	58
BsnI	GGCC	2 cut(s)	29, 765
Bsp1286I	GDGCHC	1 cut(s)	707
Bsp143I	GATC	4 cut(s)	10, 864, 871, 1022
BspANI	GGCC	2 cut(s)	29, 765
BspCNI	CTCAG	5 cut(s)	73, 217, 310, 418, 982
BspLI	GGNNCC	4 cut(s)	58, 74, 397, 582
BspMAI	CTGCAG	1 cut(s)	738
BspMI	ACCTGC	1 cut(s)	727
BspPI	GGATC	1 cut(s)	866
BsrI	ACTGG	2 cut(s)	248, 418
BssECI	CCNNGG	4 cut(s)	174, 193, 709, 842
BssMI	GATC	4 cut(s)	10, 864, 871, 1022
BssT1I	CCWWGG	1 cut(s)	193
Bst2UI	CCWGG	2 cut(s)	176, 711
Bst4CI	ACNGT	3 cut(s)	44, 572, 791
Bst6I	CTCTTC	3 cut(s)	570, 607, 1022
BstC8I	GCNNGC	2 cut(s)	126, 485
BstDEI	CTNAG	5 cut(s)	81, 225, 318, 426, 969
BstF5I	GGATG	2 cut(s)	595, 694
BstH2I	RGCGCY	1 cut(s)	117
BstHHI	GCGC	1 cut(s)	116
BstKTI	GATC	4 cut(s)	13, 867, 874, 1025
BstMAI	GTCTC	1 cut(s)	969
BstMBI	GATC	4 cut(s)	10, 864, 871, 1022
BstMCI	CGRYCG	2 cut(s)	439, 1025
BstMWI	GCNNNNNNNGC	4 cut(s)	91, 125, 179, 402
BstNI	CCWGG	2 cut(s)	176, 711
BstSCI	CCNGG	2 cut(s)	174, 709
BstSFI	CTRYAG	2 cut(s)	734, 1005
BstV1I	GCAGC	2 cut(s)	103, 970
BstV2I	GAAGAC	1 cut(s)	476
BstXI	CCANNNNNNTGG	3 cut(s)	200, 779, 935
Bsu36I	CCTNAGG	1 cut(s)	969
BsuRI	GGCC	2 cut(s)	29, 765
BtsCI	GGATG	2 cut(s)	595, 694
BtsI	GCAGTG	1 cut(s)	766
BtsIMutI	CAGTG	3 cut(s)	315, 411, 766
BveI	ACCTGC	1 cut(s)	727
Cac8I	GCNNGC	2 cut(s)	126, 485
CfoI	GCGC	1 cut(s)	116
Cfr13I	GGNCC	2 cut(s)	57, 72
Csp6I	GTAC	3 cut(s)	40, 160, 301
CviAII	CATG	3 cut(s)	91, 444, 559
CviQI	GTAC	3 cut(s)	40, 160, 301
DdeI	CTNAG	5 cut(s)	81, 225, 318, 426, 969
DpnI	GATC	4 cut(s)	12, 866, 873, 1024
DpnII	GATC	4 cut(s)	10, 864, 871, 1022
EaeI	YGGCCR	2 cut(s)	27, 763
Eam1104I	CTCTTC	3 cut(s)	570, 607, 1022
EarI	CTCTTC	3 cut(s)	570, 607, 1022
Eco130I	CCWWGG	1 cut(s)	193
Eco47I	GGWCC	2 cut(s)	57, 72
Eco81I	CCTNAGG	1 cut(s)	969
EcoO109I	RGGNCCY	1 cut(s)	57
EcoRII	CCWGG	2 cut(s)	174, 709
EcoT14I	CCWWGG	1 cut(s)	193
ErhI	CCWWGG	1 cut(s)	193
FaeI	CATG	3 cut(s)	94, 447, 562
FaiI	YATR	8 cut(s)	92, 186, 445, 503, 560, 701, 747, 920
FalI	AAGNNNNNCTT	2 cut(s)	785, 817
FaqI	GGGAC	1 cut(s)	58
FatI	CATG	3 cut(s)	90, 443, 558
FblI	GTMKAC	1 cut(s)	786
Fnu4HI	GCNGC	2 cut(s)	117, 984
FokI	GGATG	2 cut(s)	602, 701
Fsp4HI	GCNGC	2 cut(s)	117, 984
GlaI	GCGC	1 cut(s)	115
GluI	GCNGC	2 cut(s)	117, 984
HaeII	RGCGCY	1 cut(s)	117
HaeIII	GGCC	2 cut(s)	29, 765
HhaI	GCGC	1 cut(s)	116
Hin1II	CATG	3 cut(s)	94, 447, 562
Hin6I	GCGC	1 cut(s)	114
HinP1I	GCGC	1 cut(s)	114
HincII	GTYRAC	2 cut(s)	595, 787
HindII	GTYRAC	2 cut(s)	595, 787
HindIII	AAGCTT	1 cut(s)	122
HinfI	GANTC	5 cut(s)	167, 714, 725, 783, 998
HphI	GGTGA	7 cut(s)	9, 272, 353, 380, 665, 751, 916
Hpy166II	GTNNAC	4 cut(s)	40, 375, 595, 787
Hpy188I	TCNGA	6 cut(s)	82, 166, 390, 843, 1022, 1039
Hpy188III	TCNNGA	3 cut(s)	131, 587, 875
Hpy8I	GTNNAC	4 cut(s)	40, 375, 595, 787
Hpy99I	CGWCG	1 cut(s)	791
HpyCH4III	ACNGT	3 cut(s)	44, 572, 791
HpyCH4V	TGCA	2 cut(s)	736, 1043
HpyF10VI	GCNNNNNNNGC	4 cut(s)	91, 125, 179, 402
HpyF3I	CTNAG	5 cut(s)	81, 225, 318, 426, 969
Hsp92II	CATG	3 cut(s)	94, 447, 562
HspAI	GCGC	1 cut(s)	114
Kzo9I	GATC	4 cut(s)	10, 864, 871, 1022
LmnI	GCTCC	5 cut(s)	99, 401, 518, 586, 710
Lsp1109I	GCAGC	2 cut(s)	103, 970
LweI	GCATC	2 cut(s)	253, 1030
MaeIII	GTNAC	5 cut(s)	15, 104, 289, 722, 739
MalI	GATC	4 cut(s)	12, 866, 873, 1024
MboI	GATC	4 cut(s)	10, 864, 871, 1022
MboII	GAAGA	8 cut(s)	148, 236, 481, 587, 624, 1039, 1039, 1042
MhlI	GDGCHC	1 cut(s)	707
MlsI	TGGCCA	1 cut(s)	29
MluCI	AATT	3 cut(s)	213, 826, 1063
MluNI	TGGCCA	1 cut(s)	29
MlyI	GAGTC	2 cut(s)	719, 792
MmeI	TCCRAC	3 cut(s)	190, 666, 760
Mox20I	TGGCCA	1 cut(s)	29
MroXI	GAANNNNTTC	1 cut(s)	1016
MscI	TGGCCA	1 cut(s)	29
MseI	TTAA	4 cut(s)	252, 507, 600, 1066
MslI	CAYNNNNRTG	1 cut(s)	552
Msp20I	TGGCCA	1 cut(s)	29
MspR9I	CCNGG	2 cut(s)	176, 711
MvaI	CCWGG	2 cut(s)	176, 711
MwoI	GCNNNNNNNGC	4 cut(s)	91, 125, 179, 402
NdeII	GATC	4 cut(s)	10, 864, 871, 1022
NlaIII	CATG	3 cut(s)	94, 447, 562
NlaIV	GGNNCC	4 cut(s)	58, 74, 397, 582
NmuCI	GTSAC	3 cut(s)	15, 722, 739
PaqCI	CACCTGC	1 cut(s)	727
PdmI	GAANNNNTTC	1 cut(s)	1016
PfeI	GAWTC	3 cut(s)	167, 714, 998
PkrI	GCNGC	2 cut(s)	118, 985
Ple19I	CGATCG	1 cut(s)	1025
PleI	GAGTC	2 cut(s)	719, 791
PpsI	GAGTC	2 cut(s)	719, 791
PpuMI	RGGWCCY	1 cut(s)	57
Psp5II	RGGWCCY	1 cut(s)	57
Psp6I	CCWGG	2 cut(s)	174, 709
PspGI	CCWGG	2 cut(s)	174, 709
PspN4I	GGNNCC	4 cut(s)	58, 74, 397, 582
PspPI	GGNCC	2 cut(s)	57, 72
PspPPI	RGGWCCY	1 cut(s)	57
PstI	CTGCAG	1 cut(s)	738
PvuI	CGATCG	1 cut(s)	1025
RsaI	GTAC	3 cut(s)	41, 161, 302
RsaNI	GTAC	3 cut(s)	40, 160, 301
RseI	CAYNNNNRTG	1 cut(s)	552
SalI	GTCGAC	1 cut(s)	785
SaqAI	TTAA	4 cut(s)	252, 507, 600, 1066
SatI	GCNGC	2 cut(s)	117, 984
Sau3AI	GATC	4 cut(s)	10, 864, 871, 1022
Sau96I	GGNCC	2 cut(s)	57, 72
SbfI	CCTGCAGG	1 cut(s)	738
ScaI	AGTACT	1 cut(s)	161
SchI	GAGTC	2 cut(s)	719, 792
ScrFI	CCNGG	2 cut(s)	176, 711
SdaI	CCTGCAGG	1 cut(s)	738
SduI	GDGCHC	1 cut(s)	707
SfaNI	GCATC	2 cut(s)	253, 1030
SfcI	CTRYAG	2 cut(s)	734, 1005
SinI	GGWCC	2 cut(s)	57, 72
SmiMI	CAYNNNNRTG	1 cut(s)	552
SmlI	CTYRAG	2 cut(s)	131, 977
SmoI	CTYRAG	2 cut(s)	131, 977
Sse8387I	CCTGCAGG	1 cut(s)	738
Sse9I	AATT	3 cut(s)	213, 826, 1063
StyD4I	CCNGG	2 cut(s)	174, 709
StyI	CCWWGG	1 cut(s)	193
TaaI	ACNGT	3 cut(s)	44, 572, 791
TaqI	TCGA	3 cut(s)	439, 786, 1025
TaqII	GACCGA	1 cut(s)	425
TasI	AATT	3 cut(s)	213, 826, 1063
TatI	WGTACW	1 cut(s)	159
TfiI	GAWTC	3 cut(s)	167, 714, 998
Tru1I	TTAA	4 cut(s)	252, 507, 600, 1066
Tru9I	TTAA	4 cut(s)	252, 507, 600, 1066
TscAI	CASTG	3 cut(s)	322, 418, 766
TseFI	GTSAC	3 cut(s)	15, 722, 739
TseI	GCWGC	2 cut(s)	116, 983
Tsp45I	GTSAC	3 cut(s)	15, 722, 739
TspDTI	ATGAA	1 cut(s)	823
TspGWI	ACGGA	1 cut(s)	86
TspRI	CASTG	3 cut(s)	322, 418, 766
VpaK11BI	GGWCC	2 cut(s)	57, 72
XmiI	GTMKAC	1 cut(s)	786
XmnI	GAANNNNTTC	1 cut(s)	1016
ZrmI	AGTACT	1 cut(s)	161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.