pycom11g09650

Glutelin type-A

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0001439
Physical Location & Seq
Forward (+)
7911191 .. 7912829
1639 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g09650.2

Sequence Viewer

Length: 1041 bp
ATGGAGCTTGATCTTTCACCCAAGTTGGCCAAGAAGGTGTACGGCGGCGATGGTGGCTCCTACTTTGCCTGGTCACCGTCGGAGCTTCCCATGCTCCGTGAAGGTAACATCGGCGCCGCCAAGCTCGCTCTGGAGAAGGACGGGTTCGCTCTCCCCAAGTACTCTGATTCCAACCAGGTCGCTTATGTCCTCCAAGGTACTGGTGTAGTCGGAATTGTCCTCCCTGAGAAGGAAGAGAGGGTTCTTCCAGTAAAGAAGGGTGATGCCATTGCCCTCCCGTTCGGAGTTGTCACTTGGTGGTACAACAAGGAGGACACTGAGTTCGTTGTTCTTTTCTTGGGTGACACTTCAAAAGCTCACAAGAGGGGTGAGTTTACCGACTTCTATCTCAATGGCTCCAACGCCATTTTCACTGGCTTCTCAACTGAGTTTGTCGGCCGGGCATGGGATTTGGAGGAGAGTGTTGTGAAGACTCTTGTTGGCAGGCAATCCGGCAAGGGCATTGTCAAATTGAGCGGAGTTACCTTGCCCGAGCCAAAGAAGGAACACCGTGATGGTATGACATTGAACTGCGAAGAGGCTCCCCTGGATGTTGACATTAAGGGTGGTGGAAGAGTTGTGGTCTTGAATACCAAAAACCTTCCTTTGGTCGGTGAGGTTGGGCTTGGTGCTGACCTTGTGAGGTTGGACGGAAGTGCCATGTGCTCCCCTGGATTTTCTTGTGACTCGGCTCTGCAGGTGACTTATATTGTTAGGGGCAGTGGCCGTGTCCAGGTTGTTGGTGTTGACGGTAAGAGGGTGTTGGAAACTACCATCAAAGCCGGTAATCTCTTCATCGTTCCTAGGTTCTTTGTTGTGTCAAAGATTGCTCGATCCAGAGGGCTTGGAATGGTTTTCTATCATCACTACTCCCAACCCGATATTCACCCACTTGGCTGGAAGCATTGGGTGCTGGAAGGCTCTATCTCCTCAGGTGCTCCAGGCTGCATTCAACGTGGATTCAGAAACAGAGAAACTTTTCCGTTCGAAGAGGACTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

347

Amino Acids

37.76

Weight (kDa)

6.62

Isoelectric Point (pI)

35.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 727
Acc36I ACCTGC 1 cut(s) 727
AccB1I GGYRCC 1 cut(s) 113
AccBSI CCGCTC 1 cut(s) 516
AciI CCGC 3 cut(s) 45, 117, 516
AclWI GGATC 1 cut(s) 867
AcoI YGGCCR 3 cut(s) 27, 436, 763
AcyI GRCGYC 1 cut(s) 114
AdeI CACNNNGTG 1 cut(s) 297
AfaI GTAC 4 cut(s) 41, 161, 199, 302
AfiI CCNNNNNNNGG 5 cut(s) 229, 445, 646, 650, 772
AgsI TTSAA 4 cut(s) 351, 568, 628, 992
AjnI CCWGG 6 cut(s) 68, 174, 585, 709, 771, 979
AjuI GAANNNNNNNTTGG 4 cut(s) 392, 424, 906, 938
AloI GAACNNNNNNTCC 2 cut(s) 305, 337
AluBI AGCT 4 cut(s) 7, 85, 124, 356
AluI AGCT 4 cut(s) 7, 85, 124, 356
Alw21I GWGCWC 2 cut(s) 707, 979
AlwI GGATC 1 cut(s) 867
Ama87I CYCGRG 1 cut(s) 530
AoxI GGCC 3 cut(s) 27, 436, 763
ApeKI GCWGC 1 cut(s) 984
ArsI GACNNNNNNTTYG 2 cut(s) 305, 337
Asp700I GAANNNNTTC 1 cut(s) 1017
AspA2I CCTAGG 1 cut(s) 842
AspLEI GCGC 1 cut(s) 116
AsuC2I CCSGG 1 cut(s) 440
AsuHPI GGTGA 8 cut(s) 9, 66, 272, 353, 380, 665, 751, 917
AsuII TTCGAA 1 cut(s) 1026
AvaI CYCGRG 1 cut(s) 530
AvrII CCTAGG 1 cut(s) 842
AxyI CCTNAGG 1 cut(s) 970
BaeI ACNNNNGTAYC 2 cut(s) 189, 222
BalI TGGCCA 1 cut(s) 29
BanI GGYRCC 1 cut(s) 113
BbsI GAAGAC 1 cut(s) 476
Bbv12I GWGCWC 2 cut(s) 707, 979
BbvI GCAGC 1 cut(s) 971
BccI CCATC 3 cut(s) 44, 548, 821
BceAI ACGGC 2 cut(s) 58, 750
BciT130I CCWGG 6 cut(s) 70, 176, 587, 711, 773, 981
BcnI CCSGG 1 cut(s) 440
BfaI CTAG 1 cut(s) 843
BfmI CTRYAG 1 cut(s) 734
BfoI RGCGCY 1 cut(s) 117
BfuAI ACCTGC 1 cut(s) 727
BisI GCNGC 3 cut(s) 46, 117, 985
BlnI CCTAGG 1 cut(s) 842
BlsI GCNGC 3 cut(s) 47, 118, 986
BmcAI AGTACT 1 cut(s) 161
Bme1390I CCNGG 7 cut(s) 70, 176, 440, 587, 711, 773, 981
BmeT110I CYCGRG 1 cut(s) 530
BmiI GGNNCC 4 cut(s) 58, 115, 397, 582
BmrFI CCNGG 7 cut(s) 70, 176, 440, 587, 711, 773, 981
BmsI GCATC 1 cut(s) 253
BpiI GAAGAC 1 cut(s) 476
BpmI CTGGAG 2 cut(s) 152, 963
Bpu14I TTCGAA 1 cut(s) 1026
BpuMI CCSGG 1 cut(s) 440
BsaHI GRCGYC 1 cut(s) 114
BsaJI CCNNGG 4 cut(s) 193, 585, 709, 842
Bsc4I CCNNNNNNNGG 5 cut(s) 229, 445, 646, 650, 772
Bse118I RCCGGY 1 cut(s) 821
Bse1I ACTGG 3 cut(s) 205, 248, 418
Bse21I CCTNAGG 1 cut(s) 970
Bse3DI GCAATG 1 cut(s) 267
BseBI CCWGG 6 cut(s) 70, 176, 587, 711, 773, 981
BseDI CCNNGG 4 cut(s) 193, 585, 709, 842
BseGI GGATG 1 cut(s) 595
BseLI CCNNNNNNNGG 5 cut(s) 229, 445, 646, 650, 772
BseMI GCAATG 1 cut(s) 267
BseMII CTCAG 4 cut(s) 216, 309, 417, 984
BseNI ACTGG 3 cut(s) 205, 248, 418
BseRI GAGGAG 2 cut(s) 470, 958
BseX3I CGGCCG 1 cut(s) 436
BseXI GCAGC 1 cut(s) 971
Bsh1285I CGRYCG 1 cut(s) 439
BshFI GGCC 3 cut(s) 29, 438, 765
BshNI GGYRCC 1 cut(s) 113
BsiEI CGRYCG 1 cut(s) 439
BsiHKAI GWGCWC 2 cut(s) 707, 979
BsiHKCI CYCGRG 1 cut(s) 530
BsiSI CCGG 3 cut(s) 439, 492, 822
BslI CCNNNNNNNGG 5 cut(s) 229, 445, 646, 650, 772
BsmI GAATGC 1 cut(s) 987
BsnI GGCC 3 cut(s) 29, 438, 765
BsoBI CYCGRG 1 cut(s) 530
Bsp119I TTCGAA 1 cut(s) 1026
Bsp1286I GDGCHC 2 cut(s) 707, 979
Bsp143I GATC 2 cut(s) 10, 872
BspACI CCGC 3 cut(s) 45, 117, 516
BspANI GGCC 3 cut(s) 29, 438, 765
BspCNI CTCAG 4 cut(s) 217, 310, 418, 983
BspLI GGNNCC 4 cut(s) 58, 115, 397, 582
BspMAI CTGCAG 1 cut(s) 738
BspMI ACCTGC 1 cut(s) 727
BspPI GGATC 1 cut(s) 867
BspT104I TTCGAA 1 cut(s) 1026
BspT107I GGYRCC 1 cut(s) 113
BsrBI CCGCTC 1 cut(s) 516
BsrDI GCAATG 1 cut(s) 267
BsrFI RCCGGY 1 cut(s) 821
BsrI ACTGG 3 cut(s) 205, 248, 418
BssAI RCCGGY 1 cut(s) 821
BssECI CCNNGG 4 cut(s) 193, 585, 709, 842
BssMI GATC 2 cut(s) 10, 872
BssNI GRCGYC 1 cut(s) 114
BssT1I CCWWGG 2 cut(s) 193, 842
Bst2UI CCWGG 6 cut(s) 70, 176, 587, 711, 773, 981
Bst4CI ACNGT 3 cut(s) 78, 551, 791
Bst6I CTCTTC 5 cut(s) 228, 570, 607, 836, 1023
BstACI GRCGYC 1 cut(s) 114
BstAPI GCANNNNNTGC 1 cut(s) 949
BstBI TTCGAA 1 cut(s) 1026
BstC8I GCNNGC 2 cut(s) 126, 485
BstDEI CTNAG 4 cut(s) 225, 318, 426, 970
BstEII GGTNACC 1 cut(s) 72
BstF5I GGATG 1 cut(s) 595
BstH2I RGCGCY 1 cut(s) 117
BstHHI GCGC 1 cut(s) 116
BstKTI GATC 2 cut(s) 13, 875
BstMBI GATC 2 cut(s) 10, 872
BstMCI CGRYCG 1 cut(s) 439
BstMWI GCNNNNNNNGC 4 cut(s) 54, 91, 125, 949
BstNI CCWGG 6 cut(s) 70, 176, 587, 711, 773, 981
BstPI GGTNACC 1 cut(s) 72
BstSCI CCNGG 7 cut(s) 68, 174, 438, 585, 709, 771, 979
BstSFI CTRYAG 1 cut(s) 734
BstV1I GCAGC 1 cut(s) 971
BstV2I GAAGAC 1 cut(s) 476
BstXI CCANNNNNNTGG 3 cut(s) 200, 779, 936
BstZI CGGCCG 1 cut(s) 436
Bsu36I CCTNAGG 1 cut(s) 970
BsuRI GGCC 3 cut(s) 29, 438, 765
BtgZI GCGATG 1 cut(s) 63
BtsCI GGATG 1 cut(s) 595
BtsI GCAGTG 1 cut(s) 766
BtsIMutI CAGTG 3 cut(s) 315, 411, 766
BveI ACCTGC 1 cut(s) 727
Cac8I GCNNGC 2 cut(s) 126, 485
CfoI GCGC 1 cut(s) 116
Cfr10I RCCGGY 1 cut(s) 821
CsiI ACCWGGT 1 cut(s) 174
Csp6I GTAC 4 cut(s) 40, 160, 198, 301
CviAII CATG 3 cut(s) 91, 444, 700
CviQI GTAC 4 cut(s) 40, 160, 198, 301
DdeI CTNAG 4 cut(s) 225, 318, 426, 970
DinI GGCGCC 1 cut(s) 115
DpnI GATC 2 cut(s) 12, 874
DpnII GATC 2 cut(s) 10, 872
DraIII CACNNNGTG 1 cut(s) 297
EaeI YGGCCR 3 cut(s) 27, 436, 763
EagI CGGCCG 1 cut(s) 436
Eam1104I CTCTTC 5 cut(s) 228, 570, 607, 836, 1023
EarI CTCTTC 5 cut(s) 228, 570, 607, 836, 1023
EclXI CGGCCG 1 cut(s) 436
Eco130I CCWWGG 2 cut(s) 193, 842
Eco52I CGGCCG 1 cut(s) 436
Eco81I CCTNAGG 1 cut(s) 970
Eco88I CYCGRG 1 cut(s) 530
Eco91I GGTNACC 1 cut(s) 72
EcoO65I GGTNACC 1 cut(s) 72
EcoRII CCWGG 6 cut(s) 68, 174, 585, 709, 771, 979
EcoT14I CCWWGG 2 cut(s) 193, 842
EgeI GGCGCC 1 cut(s) 115
EheI GGCGCC 1 cut(s) 115
ErhI CCWWGG 2 cut(s) 193, 842
FaeI CATG 3 cut(s) 94, 447, 703
FaiI YATR 6 cut(s) 92, 186, 445, 560, 701, 747
FatI CATG 3 cut(s) 90, 443, 699
Fnu4HI GCNGC 3 cut(s) 46, 117, 985
FokI GGATG 1 cut(s) 602
Fsp4HI GCNGC 3 cut(s) 46, 117, 985
FspBI CTAG 1 cut(s) 843
GlaI GCGC 1 cut(s) 115
GluI GCNGC 3 cut(s) 46, 117, 985
GsuI CTGGAG 2 cut(s) 152, 963
HaeII RGCGCY 1 cut(s) 117
HaeIII GGCC 3 cut(s) 29, 438, 765
HapII CCGG 3 cut(s) 439, 492, 822
HhaI GCGC 1 cut(s) 116
Hin1I GRCGYC 1 cut(s) 114
Hin1II CATG 3 cut(s) 94, 447, 703
Hin6I GCGC 1 cut(s) 114
HinP1I GCGC 1 cut(s) 114
HincII GTYRAC 2 cut(s) 595, 787
HindII GTYRAC 2 cut(s) 595, 787
HinfI GANTC 4 cut(s) 167, 472, 725, 999
HpaII CCGG 3 cut(s) 439, 492, 822
HphI GGTGA 8 cut(s) 9, 66, 272, 353, 380, 665, 751, 917
Hpy166II GTNNAC 4 cut(s) 40, 375, 595, 787
Hpy188I TCNGA 6 cut(s) 82, 166, 212, 284, 1004, 1040
Hpy188III TCNNGA 3 cut(s) 131, 625, 876
Hpy8I GTNNAC 4 cut(s) 40, 375, 595, 787
Hpy99I CGWCG 1 cut(s) 82
HpyAV CCTTC 8 cut(s) 28, 95, 130, 223, 250, 535, 650, 950
HpyCH4III ACNGT 3 cut(s) 78, 551, 791
HpyCH4IV ACGT 1 cut(s) 994
HpyCH4V TGCA 2 cut(s) 736, 987
HpyF10VI GCNNNNNNNGC 4 cut(s) 54, 91, 125, 949
HpyF3I CTNAG 4 cut(s) 225, 318, 426, 970
HpySE526I ACGT 1 cut(s) 994
Hsp92I GRCGYC 1 cut(s) 114
Hsp92II CATG 3 cut(s) 94, 447, 703
HspAI GCGC 1 cut(s) 114
KasI GGCGCC 1 cut(s) 113
Kzo9I GATC 2 cut(s) 10, 872
LmnI GCTCC 8 cut(s) 4, 62, 82, 99, 401, 586, 710, 982
Lsp1109I GCAGC 1 cut(s) 971
LweI GCATC 1 cut(s) 253
MabI ACCWGGT 1 cut(s) 174
MaeI CTAG 1 cut(s) 843
MaeII ACGT 1 cut(s) 994
MaeIII GTNAC 7 cut(s) 72, 104, 289, 341, 520, 722, 739
MalI GATC 2 cut(s) 12, 874
MbiI CCGCTC 1 cut(s) 516
MboI GATC 2 cut(s) 10, 872
MboII GAAGA 7 cut(s) 236, 245, 481, 587, 624, 823, 1040
MhlI GDGCHC 2 cut(s) 707, 979
MlsI TGGCCA 1 cut(s) 29
MluCI AATT 2 cut(s) 213, 509
MluNI TGGCCA 1 cut(s) 29
Mly113I GGCGCC 1 cut(s) 114
MlyI GAGTC 2 cut(s) 466, 719
MmeI TCCRAC 6 cut(s) 60, 190, 195, 423, 666, 783
Mox20I TGGCCA 1 cut(s) 29
MroXI GAANNNNTTC 1 cut(s) 1017
MscI TGGCCA 1 cut(s) 29
MseI TTAA 1 cut(s) 600
MslI CAYNNNNRTG 1 cut(s) 552
Msp20I TGGCCA 1 cut(s) 29
MspI CCGG 3 cut(s) 439, 492, 822
MspR9I CCNGG 7 cut(s) 70, 176, 440, 587, 711, 773, 981
Mva1269I GAATGC 1 cut(s) 987
MvaI CCWGG 6 cut(s) 70, 176, 587, 711, 773, 981
MwoI GCNNNNNNNGC 4 cut(s) 54, 91, 125, 949
NarI GGCGCC 1 cut(s) 114
NciI CCSGG 1 cut(s) 440
NdeII GATC 2 cut(s) 10, 872
NlaIII CATG 3 cut(s) 94, 447, 703
NlaIV GGNNCC 4 cut(s) 58, 115, 397, 582
NmeAIII GCCGAG 1 cut(s) 707
NmuCI GTSAC 5 cut(s) 72, 289, 341, 722, 739
NspV TTCGAA 1 cut(s) 1026
PaqCI CACCTGC 1 cut(s) 727
PctI GAATGC 1 cut(s) 987
PdmI GAANNNNTTC 1 cut(s) 1017
PfeI GAWTC 2 cut(s) 167, 999
PkrI GCNGC 3 cut(s) 47, 118, 986
PleI GAGTC 2 cut(s) 466, 719
PluTI GGCGCC 1 cut(s) 117
PpsI GAGTC 2 cut(s) 466, 719
Psp6I CCWGG 6 cut(s) 68, 174, 585, 709, 771, 979
PspEI GGTNACC 1 cut(s) 72
PspGI CCWGG 6 cut(s) 68, 174, 585, 709, 771, 979
PspN4I GGNNCC 4 cut(s) 58, 115, 397, 582
PstI CTGCAG 1 cut(s) 738
RsaI GTAC 4 cut(s) 41, 161, 199, 302
RsaNI GTAC 4 cut(s) 40, 160, 198, 301
RseI CAYNNNNRTG 1 cut(s) 552
SaqAI TTAA 1 cut(s) 600
SatI GCNGC 3 cut(s) 46, 117, 985
Sau3AI GATC 2 cut(s) 10, 872
ScaI AGTACT 1 cut(s) 161
SchI GAGTC 2 cut(s) 466, 719
ScrFI CCNGG 7 cut(s) 70, 176, 440, 587, 711, 773, 981
SduI GDGCHC 2 cut(s) 707, 979
SexAI ACCWGGT 1 cut(s) 174
SfaNI GCATC 1 cut(s) 253
SfcI CTRYAG 1 cut(s) 734
SfoI GGCGCC 1 cut(s) 115
SfuI TTCGAA 1 cut(s) 1026
SmiMI CAYNNNNRTG 1 cut(s) 552
Sse9I AATT 2 cut(s) 213, 509
SsiI CCGC 3 cut(s) 45, 117, 516
SspDI GGCGCC 1 cut(s) 113
SspMI CTAG 1 cut(s) 843
StyD4I CCNGG 7 cut(s) 68, 174, 438, 585, 709, 771, 979
StyI CCWWGG 2 cut(s) 193, 842
TaaI ACNGT 3 cut(s) 78, 551, 791
TaiI ACGT 1 cut(s) 997
TaqI TCGA 2 cut(s) 871, 1026
TasI AATT 2 cut(s) 213, 509
TatI WGTACW 1 cut(s) 159
TauI GCSGC 2 cut(s) 48, 119
TfiI GAWTC 2 cut(s) 167, 999
Tru1I TTAA 1 cut(s) 600
Tru9I TTAA 1 cut(s) 600
TscAI CASTG 3 cut(s) 322, 418, 766
TseFI GTSAC 5 cut(s) 72, 289, 341, 722, 739
TseI GCWGC 1 cut(s) 984
Tsp45I GTSAC 5 cut(s) 72, 289, 341, 722, 739
TspDTI ATGAA 1 cut(s) 823
TspGWI ACGGA 3 cut(s) 86, 705, 1011
TspRI CASTG 3 cut(s) 322, 418, 766
XcmI CCANNNNNNNNNTGG 1 cut(s) 127
XmaJI CCTAGG 1 cut(s) 842
XmnI GAANNNNTTC 1 cut(s) 1017
XspI CTAG 1 cut(s) 843
ZrmI AGTACT 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.