RLG00000004904

Glutelin type-A

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0001439
Physical Location & Seq
Reverse (-)
63545134 .. 63546204
1071 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004904

Sequence Viewer

Length: 936 bp
ATGGAGATTGATCTTACACCAAGGTTGGCTAAGAAAGTTTATGGAGGAGATGGTGGTTCCTACTCTGCCTGGTCCCCATTGGAGCTTCCCATTCTCGGTGAAGGTGACATTGGAGCTGCCAAGCTCTCTCTGGAGAAGGACGGCTTTGCTCTCCCCAATTACTCTGACTCTGCCAGAGATGCATATAAAAGGTACGTTCTTCCAGTGAAGAAGGGTGATGCCATTGCCCTCCCTTTTGGAGTTATCACATCGTGGTACAACAAAGAGGACACTAAATTTGTGGTTCTTTTCTTGGGAGATACCAAAACAGCTCATAAAAGGGGCGAATTCACTGACTTCTTTTTCAATGGTTCTAATGGCATTTTTATTGGCTTCCCAACTGAGTTTGTTGGTCGAGCATGGGATTTGGAAGAGAGTGTTGTAAAGACTCTTGTTGGCAAGCAAACCGGCAAGGGCATTGTTAAGTTAAGGGGAGCCAATTTGCCTGAGCCAAACAAGGAACATAGAGATGGGATGACATTGAATTGCCAAGAGGCTCCTCTTGATGTTGATATTAAGGGCGGTGGAAGAGTTGTTGTTTTGAATACTAAGAATCTTCCTTTGGTTGGTGAGGTTGGGCTTGGTGTTGATCTTGTTAGGCTGGACGGAAGTGCTATGTGCTCCCTTTGGTTTTCTTGTGACTCTACATTGCAGGTGACTTACATTATTAGGGGAAGTGGCCGTGTCCAAGTTGTTGGTGTCAATGGGAAGAGGGTCTTGGAAACAACCATTACAGCCGGTAACTTATTCATTGTTCCTCGATTCTTTGTCTATTGTGCTTGGAAGGCATTATCTCCTCAGGTGCTTGAGGTTTCCTTGAACGTGGATTCAGATACTGAGAAACTCTTCCGATCAAAGAGAGCTTTTGATGCAATCCTCTTCCCTCCTTCCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

312

Amino Acids

34.01

Weight (kDa)

8.22

Isoelectric Point (pI)

29.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 183 - 294 6.3e-13 Cupin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 682
Acc36I ACCTGC 1 cut(s) 682
AciI CCGC 1 cut(s) 561
AcoI YGGCCR 1 cut(s) 718
AcsI RAATTY 2 cut(s) 275, 326
AdeI CACNNNGTG 1 cut(s) 252
AfaI GTAC 2 cut(s) 194, 257
AfiI CCNNNNNNNGG 2 cut(s) 95, 605
AgsI TTSAA 4 cut(s) 346, 523, 583, 859
AjnI CCWGG 1 cut(s) 68
AjuI GAANNNNNNNTTGG 6 cut(s) 93, 125, 584, 616, 740, 772
AluBI AGCT 5 cut(s) 85, 116, 124, 311, 902
AluI AGCT 5 cut(s) 85, 116, 124, 311, 902
Alw21I GWGCWC 1 cut(s) 662
AlwNI CAGNNNCTG 1 cut(s) 875
AoxI GGCC 1 cut(s) 718
ApeKI GCWGC 1 cut(s) 116
ApoI RAATTY 2 cut(s) 275, 326
ArsI GACNNNNNNTTYG 2 cut(s) 260, 292
Asp700I GAANNNNTTC 1 cut(s) 884
AspS9I GGNCC 1 cut(s) 72
AsuHPI GGTGA 5 cut(s) 110, 116, 227, 620, 706
AvaII GGWCC 1 cut(s) 72
AxyI CCTNAGG 1 cut(s) 837
Bbv12I GWGCWC 1 cut(s) 662
BbvI GCAGC 1 cut(s) 103
BccI CCATC 2 cut(s) 44, 503
BceAI ACGGC 2 cut(s) 157, 705
BciT130I CCWGG 1 cut(s) 70
BfuAI ACCTGC 1 cut(s) 682
BisI GCNGC 1 cut(s) 117
BlsI GCNGC 1 cut(s) 118
Bme1390I CCNGG 1 cut(s) 70
Bme18I GGWCC 1 cut(s) 72
BmgT120I GGNCC 1 cut(s) 72
BmiI GGNNCC 4 cut(s) 58, 74, 475, 537
BmrFI CCNGG 1 cut(s) 70
BmsI GCATC 3 cut(s) 169, 208, 898
BpmI CTGGAG 1 cut(s) 152
Bpu10I CCTNAGC 1 cut(s) 486
BpuEI CTTGAG 1 cut(s) 866
BsaJI CCNNGG 1 cut(s) 20
Bsc4I CCNNNNNNNGG 2 cut(s) 95, 605
Bse118I RCCGGY 2 cut(s) 446, 776
Bse1I ACTGG 1 cut(s) 203
Bse21I CCTNAGG 1 cut(s) 837
Bse3DI GCAATG 2 cut(s) 222, 686
BseBI CCWGG 1 cut(s) 70
BseDI CCNNGG 1 cut(s) 20
BseGI GGATG 1 cut(s) 519
BseLI CCNNNNNNNGG 2 cut(s) 95, 605
BseMI GCAATG 2 cut(s) 222, 686
BseMII CTCAG 4 cut(s) 372, 477, 851, 867
BseNI ACTGG 1 cut(s) 203
BseRI GAGGAG 3 cut(s) 60, 528, 825
BseXI GCAGC 1 cut(s) 103
BshFI GGCC 1 cut(s) 720
BsiHKAI GWGCWC 1 cut(s) 662
BsiSI CCGG 2 cut(s) 447, 777
BslFI GGGAC 1 cut(s) 58
BslI CCNNNNNNNGG 2 cut(s) 95, 605
BsmFI GGGAC 1 cut(s) 58
BsnI GGCC 1 cut(s) 720
Bsp1286I GDGCHC 1 cut(s) 662
Bsp143I GATC 3 cut(s) 10, 628, 890
BspACI CCGC 1 cut(s) 561
BspANI GGCC 1 cut(s) 720
BspCNI CTCAG 4 cut(s) 373, 478, 850, 868
BspLI GGNNCC 4 cut(s) 58, 74, 475, 537
BspMI ACCTGC 1 cut(s) 682
BsrDI GCAATG 2 cut(s) 222, 686
BsrFI RCCGGY 2 cut(s) 446, 776
BsrI ACTGG 1 cut(s) 203
BssAI RCCGGY 2 cut(s) 446, 776
BssECI CCNNGG 1 cut(s) 20
BssMI GATC 3 cut(s) 10, 628, 890
BssT1I CCWWGG 1 cut(s) 20
Bst2UI CCWGG 1 cut(s) 70
Bst6I CTCTTC 5 cut(s) 405, 562, 743, 890, 923
BstC8I GCNNGC 1 cut(s) 440
BstDEI CTNAG 6 cut(s) 30, 381, 486, 588, 837, 876
BstF5I GGATG 1 cut(s) 519
BstKTI GATC 3 cut(s) 13, 631, 893
BstMBI GATC 3 cut(s) 10, 628, 890
BstMWI GCNNNNNNNGC 3 cut(s) 179, 824, 908
BstNI CCWGG 1 cut(s) 70
BstSCI CCNGG 1 cut(s) 68
BstV1I GCAGC 1 cut(s) 103
BstXI CCANNNNNNTGG 1 cut(s) 734
Bsu36I CCTNAGG 1 cut(s) 837
BsuRI GGCC 1 cut(s) 720
BtsCI GGATG 1 cut(s) 519
BtsIMutI CAGTG 2 cut(s) 210, 330
BveI ACCTGC 1 cut(s) 682
Cac8I GCNNGC 1 cut(s) 440
CaiI CAGNNNCTG 1 cut(s) 875
Cfr10I RCCGGY 2 cut(s) 446, 776
Cfr13I GGNCC 1 cut(s) 72
Csp6I GTAC 2 cut(s) 193, 256
CviAII CATG 1 cut(s) 399
CviQI GTAC 2 cut(s) 193, 256
DdeI CTNAG 6 cut(s) 30, 381, 486, 588, 837, 876
DpnI GATC 3 cut(s) 12, 630, 892
DpnII GATC 3 cut(s) 10, 628, 890
DraIII CACNNNGTG 1 cut(s) 252
EaeI YGGCCR 1 cut(s) 718
Eam1104I CTCTTC 5 cut(s) 405, 562, 743, 890, 923
EarI CTCTTC 5 cut(s) 405, 562, 743, 890, 923
Eco130I CCWWGG 1 cut(s) 20
Eco47I GGWCC 1 cut(s) 72
Eco81I CCTNAGG 1 cut(s) 837
EcoRI GAATTC 1 cut(s) 326
EcoRII CCWGG 1 cut(s) 68
EcoT14I CCWWGG 1 cut(s) 20
EcoT22I ATGCAT 1 cut(s) 184
ErhI CCWWGG 1 cut(s) 20
FaeI CATG 1 cut(s) 402
FaiI YATR 7 cut(s) 42, 184, 186, 315, 400, 504, 656
FalI AAGNNNNNCTT 4 cut(s) 128, 160, 740, 772
FaqI GGGAC 1 cut(s) 58
FatI CATG 1 cut(s) 398
Fnu4HI GCNGC 1 cut(s) 117
FokI GGATG 1 cut(s) 526
Fsp4HI GCNGC 1 cut(s) 117
GluI GCNGC 1 cut(s) 117
GsuI CTGGAG 1 cut(s) 152
HaeIII GGCC 1 cut(s) 720
HapII CCGG 2 cut(s) 447, 777
Hin1II CATG 1 cut(s) 402
HinfI GANTC 6 cut(s) 167, 427, 592, 680, 801, 866
HpaII CCGG 2 cut(s) 447, 777
HphI GGTGA 5 cut(s) 110, 116, 227, 620, 706
Hpy188I TCNGA 3 cut(s) 166, 871, 890
Hpy188III TCNNGA 2 cut(s) 131, 542
HpyAV CCTTC 5 cut(s) 95, 130, 205, 817, 936
HpyCH4IV ACGT 2 cut(s) 195, 861
HpyCH4V TGCA 3 cut(s) 182, 691, 911
HpyF10VI GCNNNNNNNGC 3 cut(s) 179, 824, 908
HpyF3I CTNAG 6 cut(s) 30, 381, 486, 588, 837, 876
HpySE526I ACGT 2 cut(s) 195, 861
Hsp92II CATG 1 cut(s) 402
Kzo9I GATC 3 cut(s) 10, 628, 890
LmnI GCTCC 5 cut(s) 82, 113, 473, 541, 665
Lsp1109I GCAGC 1 cut(s) 103
LweI GCATC 3 cut(s) 169, 208, 898
MaeII ACGT 2 cut(s) 195, 861
MaeIII GTNAC 4 cut(s) 104, 677, 694, 779
MalI GATC 3 cut(s) 12, 630, 892
MboI GATC 3 cut(s) 10, 628, 890
MboII GAAGA 8 cut(s) 191, 220, 422, 579, 587, 760, 877, 910
MhlI GDGCHC 1 cut(s) 662
MluCI AATT 5 cut(s) 157, 275, 326, 478, 523
MlyI GAGTC 3 cut(s) 161, 421, 674
Mph1103I ATGCAT 1 cut(s) 184
MroXI GAANNNNTTC 1 cut(s) 884
MseI TTAA 3 cut(s) 462, 467, 555
MslI CAYNNNNRTG 1 cut(s) 507
MspI CCGG 2 cut(s) 447, 777
MspR9I CCNGG 1 cut(s) 70
MvaI CCWGG 1 cut(s) 70
MwoI GCNNNNNNNGC 3 cut(s) 179, 824, 908
NdeII GATC 3 cut(s) 10, 628, 890
NlaIII CATG 1 cut(s) 402
NlaIV GGNNCC 4 cut(s) 58, 74, 475, 537
NmuCI GTSAC 3 cut(s) 104, 677, 694
NsiI ATGCAT 1 cut(s) 184
PaqCI CACCTGC 1 cut(s) 682
PdmI GAANNNNTTC 1 cut(s) 884
PfeI GAWTC 3 cut(s) 592, 801, 866
PkrI GCNGC 1 cut(s) 118
PleI GAGTC 3 cut(s) 161, 421, 674
PpsI GAGTC 3 cut(s) 161, 421, 674
Psp6I CCWGG 1 cut(s) 68
PspGI CCWGG 1 cut(s) 68
PspN4I GGNNCC 4 cut(s) 58, 74, 475, 537
PspPI GGNCC 1 cut(s) 72
PstNI CAGNNNCTG 1 cut(s) 875
RsaI GTAC 2 cut(s) 194, 257
RsaNI GTAC 2 cut(s) 193, 256
RseI CAYNNNNRTG 1 cut(s) 507
SaqAI TTAA 3 cut(s) 462, 467, 555
SatI GCNGC 1 cut(s) 117
Sau3AI GATC 3 cut(s) 10, 628, 890
Sau96I GGNCC 1 cut(s) 72
SchI GAGTC 3 cut(s) 161, 421, 674
ScrFI CCNGG 1 cut(s) 70
SduI GDGCHC 1 cut(s) 662
SfaNI GCATC 3 cut(s) 169, 208, 898
SinI GGWCC 1 cut(s) 72
SmiMI CAYNNNNRTG 1 cut(s) 507
SmlI CTYRAG 1 cut(s) 845
SmoI CTYRAG 1 cut(s) 845
Sse9I AATT 5 cut(s) 157, 275, 326, 478, 523
SsiI CCGC 1 cut(s) 561
StyD4I CCNGG 1 cut(s) 68
StyI CCWWGG 1 cut(s) 20
TaiI ACGT 2 cut(s) 198, 864
TaqI TCGA 2 cut(s) 394, 799
TasI AATT 5 cut(s) 157, 275, 326, 478, 523
TfiI GAWTC 3 cut(s) 592, 801, 866
Tru1I TTAA 3 cut(s) 462, 467, 555
Tru9I TTAA 3 cut(s) 462, 467, 555
TscAI CASTG 2 cut(s) 210, 337
TseFI GTSAC 3 cut(s) 104, 677, 694
TseI GCWGC 1 cut(s) 116
Tsp45I GTSAC 3 cut(s) 104, 677, 694
TspDTI ATGAA 1 cut(s) 778
TspGWI ACGGA 1 cut(s) 660
TspRI CASTG 2 cut(s) 210, 337
VpaK11BI GGWCC 1 cut(s) 72
XapI RAATTY 2 cut(s) 275, 326
XcmI CCANNNNNNNNNTGG 1 cut(s) 127
XmnI GAANNNNTTC 1 cut(s) 884
Zsp2I ATGCAT 1 cut(s) 184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.