Rroxscaffold_7G00163860

Glutelin type-A

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0001439
Physical Location & Seq
Forward (+)
6022065 .. 6023131
1067 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00163860.1

Sequence Viewer

Length: 993 bp
ATGGAGATTGATCTTACACCAAGGTTGGCTAAGAAGGTTTATGGAGGAGATGGTGGTTCCTACTCTGCCTGGTCGCCGTCAGAGCTTCCCATGCTCCGTGAAGGTGACATCGGAGCTGCCAAGCTCTCTCTGGAGAAGGGCGGCTTTGCTCTCCCCAATTATTCGGACTCTGCCAGAGTTGCTTATGTCCTTCAAGGTAATGGAGTAGTCGGGATTGTTCTGCCGGAGAAGGAAGAAAAGGTTCTTCCAGTGAAGAAAGGTGATGCCATTGCCCTCCCTTTTGGAGTTATCACTTGGTGGTACAACAAGGAGGACACTGAGTTTGTGGTTCTTTTCTTGGGTGATACCAAAACAGCTCACAAAAGGGGTGAGTTCACTGACTTCTATCTCAATGGCTCTAATGGCATTTTCACTGGCTTCTCAACTGAGTTTGTCGGCCGAGCATGGGATTTGGAGGAGAGTGTTGTGAAGACTCTTGTTGGCATGCAAACCGGCAAGGGCATTGCTCCTCTTGATGTTGATATTGAGGGCGGTGGAAGAGTTGTTGTTTTGAATACTAAGAACCTTCCTTTGGTAGGTGAGGTTGGGCTTGGTGCTGATCTTGTTAGGTTGGATGGAAGTGCTATGTGCTCCCCTGGGTTTTCGTGCGACTCTGCATTGCAGGTGACTTACATTGTTAGGGGAAGTGGCCGTGTCCAGGTTGTTGGTGTCGATGGAAAGAGGGTCTTGGAAACAACCGTTACAGCTGGCAACTTGTTCATCGTTCCTCGATTCTTTGTTGTTTCAAAGATTGCTGATCCGGAAGGCTTGGAATGGTTCTCCATCATCACCACACCCAATCCAATATTCACTCATCTGGCTGGAAGTATTGGTGCTTGGAAAGCACTGTCTCCTCAGGTGCTTGAGGCTTCTTTCAACGTGGATTCAGATACTGAGAAACTCTTCCGATCAAAGAGAACTTCTGATGCAATCTTCTTCCCTCCTCCGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

330

Amino Acids

35.52

Weight (kDa)

5.2

Isoelectric Point (pI)

28.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 11 - 156 1e-23 Cupin
Cupin_1 PF00190 176 - 312 7.3e-23 Cupin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 652
Acc36I ACCTGC 1 cut(s) 652
AccIII TCCGGA 1 cut(s) 799
AciI CCGC 2 cut(s) 141, 531
AclWI GGATC 1 cut(s) 791
AcoI YGGCCR 2 cut(s) 436, 688
AdeI CACNNNGTG 1 cut(s) 297
AfaI GTAC 1 cut(s) 302
AfiI CCNNNNNNNGG 4 cut(s) 445, 571, 575, 697
AgsI TTSAA 4 cut(s) 194, 553, 786, 916
AjnI CCWGG 3 cut(s) 68, 634, 696
AjuI GAANNNNNNNTTGG 4 cut(s) 554, 586, 830, 862
AluBI AGCT 5 cut(s) 85, 116, 124, 356, 746
AluI AGCT 5 cut(s) 85, 116, 124, 356, 746
Alw21I GWGCWC 1 cut(s) 632
Alw26I GTCTC 1 cut(s) 894
AlwI GGATC 1 cut(s) 791
AlwNI CAGNNNCTG 1 cut(s) 932
Aor13HI TCCGGA 1 cut(s) 799
AoxI GGCC 2 cut(s) 436, 688
ApeKI GCWGC 1 cut(s) 116
ArsI GACNNNNNNTTYG 2 cut(s) 305, 337
Asp700I GAANNNNTTC 2 cut(s) 240, 941
AsuHPI GGTGA 7 cut(s) 116, 272, 353, 380, 590, 676, 820
AxyI CCTNAGG 1 cut(s) 894
BbsI GAAGAC 1 cut(s) 476
Bbv12I GWGCWC 1 cut(s) 632
BbvI GCAGC 1 cut(s) 103
BccI CCATC 4 cut(s) 44, 608, 707, 830
BceAI ACGGC 2 cut(s) 61, 675
BciT130I CCWGG 3 cut(s) 70, 636, 698
BcoDI GTCTC 1 cut(s) 894
BfuAI ACCTGC 1 cut(s) 652
BisI GCNGC 2 cut(s) 117, 142
BlsI GCNGC 2 cut(s) 118, 143
Bme1390I CCNGG 3 cut(s) 70, 636, 698
BmiI GGNNCC 1 cut(s) 58
BmrFI CCNGG 3 cut(s) 70, 636, 698
BmsI GCATC 2 cut(s) 253, 955
BpiI GAAGAC 1 cut(s) 476
BpmI CTGGAG 1 cut(s) 152
BpuEI CTTGAG 1 cut(s) 923
BsaJI CCNNGG 3 cut(s) 20, 634, 635
BsaWI WCCGGW 1 cut(s) 799
Bsc4I CCNNNNNNNGG 4 cut(s) 445, 571, 575, 697
Bse118I RCCGGY 1 cut(s) 491
Bse1I ACTGG 2 cut(s) 248, 418
Bse21I CCTNAGG 1 cut(s) 894
Bse3DI GCAATG 3 cut(s) 267, 501, 656
BseAI TCCGGA 1 cut(s) 799
BseBI CCWGG 3 cut(s) 70, 636, 698
BseDI CCNNGG 3 cut(s) 20, 634, 635
BseGI GGATG 1 cut(s) 619
BseLI CCNNNNNNNGG 4 cut(s) 445, 571, 575, 697
BseMI GCAATG 3 cut(s) 267, 501, 656
BseMII CTCAG 4 cut(s) 309, 417, 908, 924
BseNI ACTGG 2 cut(s) 248, 418
BseRI GAGGAG 5 cut(s) 60, 470, 498, 882, 972
BseX3I CGGCCG 1 cut(s) 436
BseXI GCAGC 1 cut(s) 103
Bsh1285I CGRYCG 1 cut(s) 439
BshFI GGCC 2 cut(s) 438, 690
BsiEI CGRYCG 1 cut(s) 439
BsiHKAI GWGCWC 1 cut(s) 632
BsiSI CCGG 3 cut(s) 224, 492, 800
BslI CCNNNNNNNGG 4 cut(s) 445, 571, 575, 697
BsmAI GTCTC 1 cut(s) 894
BsnI GGCC 2 cut(s) 438, 690
Bsp1286I GDGCHC 1 cut(s) 632
Bsp13I TCCGGA 1 cut(s) 799
Bsp143I GATC 4 cut(s) 10, 598, 796, 947
BspACI CCGC 2 cut(s) 141, 531
BspANI GGCC 2 cut(s) 438, 690
BspCNI CTCAG 4 cut(s) 310, 418, 907, 925
BspEI TCCGGA 1 cut(s) 799
BspLI GGNNCC 1 cut(s) 58
BspMI ACCTGC 1 cut(s) 652
BspPI GGATC 1 cut(s) 791
BsrDI GCAATG 3 cut(s) 267, 501, 656
BsrFI RCCGGY 1 cut(s) 491
BsrI ACTGG 2 cut(s) 248, 418
BssAI RCCGGY 1 cut(s) 491
BssECI CCNNGG 3 cut(s) 20, 634, 635
BssMI GATC 4 cut(s) 10, 598, 796, 947
BssT1I CCWWGG 1 cut(s) 20
Bst2UI CCWGG 3 cut(s) 70, 636, 698
Bst4CI ACNGT 2 cut(s) 739, 888
Bst6I CTCTTC 2 cut(s) 532, 947
BstC8I GCNNGC 2 cut(s) 485, 748
BstDEI CTNAG 6 cut(s) 30, 318, 426, 558, 894, 933
BstENI CCTNNNNNAGG 1 cut(s) 573
BstF5I GGATG 1 cut(s) 619
BstKTI GATC 4 cut(s) 13, 601, 799, 950
BstMAI GTCTC 1 cut(s) 894
BstMBI GATC 4 cut(s) 10, 598, 796, 947
BstMCI CGRYCG 1 cut(s) 439
BstMWI GCNNNNNNNGC 5 cut(s) 82, 91, 179, 402, 881
BstNI CCWGG 3 cut(s) 70, 636, 698
BstNSI RCATGY 1 cut(s) 487
BstSCI CCNGG 3 cut(s) 68, 634, 696
BstV1I GCAGC 1 cut(s) 103
BstV2I GAAGAC 1 cut(s) 476
BstXI CCANNNNNNTGG 1 cut(s) 704
BstZI CGGCCG 1 cut(s) 436
Bsu36I CCTNAGG 1 cut(s) 894
BsuRI GGCC 2 cut(s) 438, 690
BtsCI GGATG 1 cut(s) 619
BtsIMutI CAGTG 5 cut(s) 255, 315, 375, 411, 884
BveI ACCTGC 1 cut(s) 652
Cac8I GCNNGC 2 cut(s) 485, 748
CaiI CAGNNNCTG 1 cut(s) 932
Cfr10I RCCGGY 1 cut(s) 491
Csp6I GTAC 1 cut(s) 301
CviAII CATG 3 cut(s) 91, 444, 484
CviQI GTAC 1 cut(s) 301
DdeI CTNAG 6 cut(s) 30, 318, 426, 558, 894, 933
DpnI GATC 4 cut(s) 12, 600, 798, 949
DpnII GATC 4 cut(s) 10, 598, 796, 947
DraIII CACNNNGTG 1 cut(s) 297
EaeI YGGCCR 2 cut(s) 436, 688
EagI CGGCCG 1 cut(s) 436
Eam1104I CTCTTC 2 cut(s) 532, 947
EarI CTCTTC 2 cut(s) 532, 947
EclXI CGGCCG 1 cut(s) 436
Eco130I CCWWGG 1 cut(s) 20
Eco52I CGGCCG 1 cut(s) 436
Eco81I CCTNAGG 1 cut(s) 894
EcoNI CCTNNNNNAGG 1 cut(s) 573
EcoRII CCWGG 3 cut(s) 68, 634, 696
EcoT14I CCWWGG 1 cut(s) 20
ErhI CCWWGG 1 cut(s) 20
FaeI CATG 3 cut(s) 94, 447, 487
FaiI YATR 6 cut(s) 42, 92, 186, 445, 485, 626
FalI AAGNNNNNCTT 4 cut(s) 128, 160, 710, 742
FatI CATG 3 cut(s) 90, 443, 483
Fnu4HI GCNGC 2 cut(s) 117, 142
FokI GGATG 1 cut(s) 626
Fsp4HI GCNGC 2 cut(s) 117, 142
GluI GCNGC 2 cut(s) 117, 142
GsuI CTGGAG 1 cut(s) 152
HaeIII GGCC 2 cut(s) 438, 690
HapII CCGG 3 cut(s) 224, 492, 800
Hin1II CATG 3 cut(s) 94, 447, 487
HinfI GANTC 5 cut(s) 167, 472, 650, 771, 923
HpaII CCGG 3 cut(s) 224, 492, 800
HphI GGTGA 7 cut(s) 116, 272, 353, 380, 590, 676, 820
Hpy166II GTNNAC 1 cut(s) 375
Hpy188I TCNGA 7 cut(s) 82, 113, 166, 928, 947, 964, 987
Hpy188III TCNNGA 4 cut(s) 131, 211, 512, 800
Hpy8I GTNNAC 1 cut(s) 375
HpyAV CCTTC 7 cut(s) 28, 95, 130, 200, 223, 575, 797
HpyCH4III ACNGT 2 cut(s) 739, 888
HpyCH4IV ACGT 1 cut(s) 918
HpyCH4V TGCA 4 cut(s) 487, 656, 661, 968
HpyF10VI GCNNNNNNNGC 5 cut(s) 82, 91, 179, 402, 881
HpyF3I CTNAG 6 cut(s) 30, 318, 426, 558, 894, 933
HpySE526I ACGT 1 cut(s) 918
Hsp92II CATG 3 cut(s) 94, 447, 487
Kpn2I TCCGGA 1 cut(s) 799
Kzo9I GATC 4 cut(s) 10, 598, 796, 947
LmnI GCTCC 4 cut(s) 99, 113, 511, 635
Lsp1109I GCAGC 1 cut(s) 103
LweI GCATC 2 cut(s) 253, 955
MaeII ACGT 1 cut(s) 918
MaeIII GTNAC 3 cut(s) 104, 664, 739
MalI GATC 4 cut(s) 12, 600, 798, 949
MboI GATC 4 cut(s) 10, 598, 796, 947
MboII GAAGA 8 cut(s) 236, 245, 265, 481, 549, 934, 964, 967
MhlI GDGCHC 1 cut(s) 632
MluCI AATT 1 cut(s) 157
MlyI GAGTC 3 cut(s) 161, 466, 644
MmeI TCCRAC 1 cut(s) 591
MroI TCCGGA 1 cut(s) 799
MroXI GAANNNNTTC 2 cut(s) 240, 941
MspA1I CMGCKG 1 cut(s) 746
MspI CCGG 3 cut(s) 224, 492, 800
MspR9I CCNGG 3 cut(s) 70, 636, 698
MvaI CCWGG 3 cut(s) 70, 636, 698
MwoI GCNNNNNNNGC 5 cut(s) 82, 91, 179, 402, 881
NdeII GATC 4 cut(s) 10, 598, 796, 947
NlaIII CATG 3 cut(s) 94, 447, 487
NlaIV GGNNCC 1 cut(s) 58
NmeAIII GCCGAG 1 cut(s) 464
NmuCI GTSAC 2 cut(s) 104, 664
NspI RCATGY 1 cut(s) 487
PaeI GCATGC 1 cut(s) 487
PaqCI CACCTGC 1 cut(s) 652
PasI CCCWGGG 1 cut(s) 635
PdmI GAANNNNTTC 2 cut(s) 240, 941
PfeI GAWTC 2 cut(s) 771, 923
PkrI GCNGC 2 cut(s) 118, 143
PleI GAGTC 3 cut(s) 161, 466, 644
PpsI GAGTC 3 cut(s) 161, 466, 644
Psp6I CCWGG 3 cut(s) 68, 634, 696
PspGI CCWGG 3 cut(s) 68, 634, 696
PspN4I GGNNCC 1 cut(s) 58
PstNI CAGNNNCTG 1 cut(s) 932
PvuII CAGCTG 1 cut(s) 746
RsaI GTAC 1 cut(s) 302
RsaNI GTAC 1 cut(s) 301
SatI GCNGC 2 cut(s) 117, 142
Sau3AI GATC 4 cut(s) 10, 598, 796, 947
SchI GAGTC 3 cut(s) 161, 466, 644
ScrFI CCNGG 3 cut(s) 70, 636, 698
SduI GDGCHC 1 cut(s) 632
SfaNI GCATC 2 cut(s) 253, 955
SmlI CTYRAG 1 cut(s) 902
SmoI CTYRAG 1 cut(s) 902
SphI GCATGC 1 cut(s) 487
Sse9I AATT 1 cut(s) 157
SsiI CCGC 2 cut(s) 141, 531
SspI AATATT 1 cut(s) 846
StyD4I CCNGG 3 cut(s) 68, 634, 696
StyI CCWWGG 1 cut(s) 20
TaaI ACNGT 2 cut(s) 739, 888
TaiI ACGT 1 cut(s) 921
TaqI TCGA 2 cut(s) 711, 769
TasI AATT 1 cut(s) 157
TauI GCSGC 1 cut(s) 144
TfiI GAWTC 2 cut(s) 771, 923
TscAI CASTG 5 cut(s) 255, 322, 382, 418, 891
TseFI GTSAC 2 cut(s) 104, 664
TseI GCWGC 1 cut(s) 116
Tsp45I GTSAC 2 cut(s) 104, 664
TspDTI ATGAA 1 cut(s) 748
TspGWI ACGGA 1 cut(s) 86
TspRI CASTG 5 cut(s) 255, 322, 382, 418, 891
XagI CCTNNNNNAGG 1 cut(s) 573
XceI RCATGY 1 cut(s) 487
XcmI CCANNNNNNNNNTGG 1 cut(s) 127
XmnI GAANNNNTTC 2 cut(s) 240, 941
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.