Rroxscaffold_3G00260780

Glutelin type-A

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0001439
Physical Location & Seq
Forward (+)
55100813 .. 55102012
1200 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00260780.1

Sequence Viewer

Length: 879 bp
ATGGAGGAGATGGTGGTTCCTACTTTGCTGGTTCTTATCGGAGCTTCCCATACTCGTGAAGGAGACATTGGAGTTGCCAAGCTCTCTCTAGAAGAGGACGGCTTTGCTCTCCCTAATTACTCGACTCGCCAAGAAGAAAATATGGAGATTGATCTTACACCAAGGTTAGCTAATAAGGTTTTTGGAGGAGATGGTGGTTCCTACTCTGCCTGGTCCTCATCAAAGCTTCCCATGCTCCATGAAGGAGACATTGGAGCCATCAAGCTCTCTATAGAAAACAACGGCTTTGCTCTCCCCAATTACTCGACTGCGCGAGTTGCTTATGTCCTTCGGGGTAATGGAGTAGTTGGAATTGTTCTGCCCGAGAAGGAAGAAAAGGTGATACCAAAACAGCTCACGAAGGGGGAGTTCACCGACTTCTATCTAAATGGTTCTAATGGCATTTTCACCGACTTCTCAACTAAGTTTGTTAGCCGAGCATGGGATTTTGAGGATAGTGTTGTGAAGACTCTTGTTGGCAAGCAAATTGGCAAGGGCATTGTTAAGTTGGGGGAGGAAGAGTTGTTGGGCGGTGGTCGTGTCCAAGTTGTTGGTGTCTATAGGAAGAGGATATTGGAAACAATCGTTACGGCTGGTAACTTGTTCGTCGTTCCTCGATTCTTTCTTGTTTCAAAGATTGCTGATCCGGAAGGCTTGGAACGGTTCTCCATCATCACCACTTTGCTAATCCAATATTCACTCATTTGGGTGGAAGTATTGGTGCTTGGAAGACATTATCTTCTCGGGTACTTGAGGCGTCCTTCAATGTGGTTTCGGACACGAGAAATTTTTTCGATTGAAGAGAACTTCGATGCAATCTTCTTCCCTCCTTCAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

292

Amino Acids

32.56

Weight (kDa)

5.61

Isoelectric Point (pI)

33.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 59 - 136 2.1e-10 Cupin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 313
AccIII TCCGGA 1 cut(s) 685
AciI CCGC 1 cut(s) 570
AclWI GGATC 1 cut(s) 677
AcsI RAATTY 1 cut(s) 825
AcyI GRCGYC 1 cut(s) 796
AfaI GTAC 1 cut(s) 788
AfiI CCNNNNNNNGG 1 cut(s) 481
AgsI TTSAA 4 cut(s) 672, 804, 839, 873
AjnI CCWGG 1 cut(s) 209
AjuI GAANNNNNNNTTGG 6 cut(s) 51, 83, 234, 266, 596, 628
AluBI AGCT 6 cut(s) 44, 82, 170, 226, 265, 394
AluI AGCT 6 cut(s) 44, 82, 170, 226, 265, 394
Alw26I GTCTC 2 cut(s) 57, 240
AlwI GGATC 1 cut(s) 677
Ama87I CYCGRG 2 cut(s) 362, 782
Aor13HI TCCGGA 1 cut(s) 685
ApoI RAATTY 1 cut(s) 825
AspLEI GCGC 1 cut(s) 313
AspS9I GGNCC 1 cut(s) 213
AsuHPI GGTGA 4 cut(s) 391, 403, 439, 706
AvaI CYCGRG 2 cut(s) 362, 782
AvaII GGWCC 1 cut(s) 213
BauI CACGAG 2 cut(s) 54, 819
BbsI GAAGAC 2 cut(s) 512, 775
BccI CCATC 4 cut(s) 4, 185, 266, 716
BceAI ACGGC 3 cut(s) 115, 298, 645
BciT130I CCWGG 1 cut(s) 211
BcoDI GTCTC 2 cut(s) 57, 240
BfaI CTAG 1 cut(s) 89
BfmI CTRYAG 2 cut(s) 270, 598
Bme1390I CCNGG 1 cut(s) 211
Bme18I GGWCC 1 cut(s) 213
BmeT110I CYCGRG 2 cut(s) 362, 782
BmgT120I GGNCC 1 cut(s) 213
BmiI GGNNCC 3 cut(s) 18, 199, 256
BmrFI CCNGG 1 cut(s) 211
BmsI GCATC 1 cut(s) 841
BpiI GAAGAC 2 cut(s) 512, 775
BpuEI CTTGAG 1 cut(s) 811
BsaHI GRCGYC 1 cut(s) 796
BsaJI CCNNGG 1 cut(s) 161
BsaWI WCCGGW 1 cut(s) 685
BsaXI ACNNNNNCTCC 2 cut(s) 545, 575
Bsc4I CCNNNNNNNGG 1 cut(s) 481
BseAI TCCGGA 1 cut(s) 685
BseBI CCWGG 1 cut(s) 211
BseDI CCNNGG 1 cut(s) 161
BseLI CCNNNNNNNGG 1 cut(s) 481
BseRI GAGGAG 2 cut(s) 20, 201
Bsh1236I CGCG 1 cut(s) 313
BsiHKCI CYCGRG 2 cut(s) 362, 782
BsiSI CCGG 1 cut(s) 686
BslI CCNNNNNNNGG 1 cut(s) 481
BsmAI GTCTC 2 cut(s) 57, 240
BsoBI CYCGRG 2 cut(s) 362, 782
Bsp13I TCCGGA 1 cut(s) 685
Bsp143I GATC 2 cut(s) 151, 682
BspACI CCGC 1 cut(s) 570
BspEI TCCGGA 1 cut(s) 685
BspFNI CGCG 1 cut(s) 313
BspLI GGNNCC 3 cut(s) 18, 199, 256
BspPI GGATC 1 cut(s) 677
BssECI CCNNGG 1 cut(s) 161
BssMI GATC 2 cut(s) 151, 682
BssNI GRCGYC 1 cut(s) 796
BssSI CACGAG 2 cut(s) 54, 819
BssT1I CCWWGG 1 cut(s) 161
Bst2BI CACGAG 2 cut(s) 54, 819
Bst2UI CCWGG 1 cut(s) 211
Bst4CI ACNGT 1 cut(s) 702
Bst6I CTCTTC 4 cut(s) 87, 552, 599, 834
BstACI GRCGYC 1 cut(s) 796
BstC8I GCNNGC 1 cut(s) 521
BstDEI CTNAG 1 cut(s) 462
BstFNI CGCG 1 cut(s) 313
BstHHI GCGC 1 cut(s) 313
BstKTI GATC 2 cut(s) 154, 685
BstMAI GTCTC 2 cut(s) 57, 240
BstMBI GATC 2 cut(s) 151, 682
BstMWI GCNNNNNNNGC 2 cut(s) 232, 317
BstNI CCWGG 1 cut(s) 211
BstSCI CCNGG 1 cut(s) 209
BstSFI CTRYAG 2 cut(s) 270, 598
BstUI CGCG 1 cut(s) 313
BstV2I GAAGAC 2 cut(s) 512, 775
BstXI CCANNNNNNTGG 1 cut(s) 590
Cac8I GCNNGC 1 cut(s) 521
CfoI GCGC 1 cut(s) 313
Cfr13I GGNCC 1 cut(s) 213
CseI GACGC 1 cut(s) 785
Csp6I GTAC 1 cut(s) 787
CviAII CATG 3 cut(s) 232, 239, 480
CviQI GTAC 1 cut(s) 787
DdeI CTNAG 1 cut(s) 462
DpnI GATC 2 cut(s) 153, 684
DpnII GATC 2 cut(s) 151, 682
Eam1104I CTCTTC 4 cut(s) 87, 552, 599, 834
EarI CTCTTC 4 cut(s) 87, 552, 599, 834
Eco130I CCWWGG 1 cut(s) 161
Eco47I GGWCC 1 cut(s) 213
Eco88I CYCGRG 2 cut(s) 362, 782
EcoRII CCWGG 1 cut(s) 209
EcoT14I CCWWGG 1 cut(s) 161
ErhI CCWWGG 1 cut(s) 161
FaeI CATG 3 cut(s) 235, 242, 483
FaiI YATR 8 cut(s) 51, 143, 233, 240, 272, 324, 481, 600
FatI CATG 3 cut(s) 231, 238, 479
FspBI CTAG 1 cut(s) 89
GlaI GCGC 1 cut(s) 312
HapII CCGG 1 cut(s) 686
HgaI GACGC 1 cut(s) 785
HhaI GCGC 1 cut(s) 313
Hin1I GRCGYC 1 cut(s) 796
Hin1II CATG 3 cut(s) 235, 242, 483
Hin6I GCGC 1 cut(s) 311
HinP1I GCGC 1 cut(s) 311
HindIII AAGCTT 1 cut(s) 224
HinfI GANTC 3 cut(s) 124, 508, 657
HpaII CCGG 1 cut(s) 686
HphI GGTGA 4 cut(s) 391, 403, 439, 706
Hpy166II GTNNAC 1 cut(s) 411
Hpy188I TCNGA 2 cut(s) 41, 816
Hpy188III TCNNGA 4 cut(s) 56, 89, 397, 686
Hpy8I GTNNAC 1 cut(s) 411
Hpy99I CGWCG 1 cut(s) 650
HpyAV CCTTC 8 cut(s) 53, 236, 338, 361, 394, 683, 810, 879
HpyCH4III ACNGT 1 cut(s) 702
HpyCH4V TGCA 1 cut(s) 854
HpyF10VI GCNNNNNNNGC 2 cut(s) 232, 317
HpyF3I CTNAG 1 cut(s) 462
Hsp92I GRCGYC 1 cut(s) 796
Hsp92II CATG 3 cut(s) 235, 242, 483
HspAI GCGC 1 cut(s) 311
Kpn2I TCCGGA 1 cut(s) 685
Kzo9I GATC 2 cut(s) 151, 682
LmnI GCTCC 3 cut(s) 41, 240, 254
LpnPI CCDG 5 cut(s) 14, 196, 223, 618, 699
LweI GCATC 1 cut(s) 841
MaeI CTAG 1 cut(s) 89
MaeIII GTNAC 2 cut(s) 625, 635
MalI GATC 2 cut(s) 153, 684
MboI GATC 2 cut(s) 151, 682
MluCI AATT 5 cut(s) 115, 298, 351, 525, 825
MlyI GAGTC 2 cut(s) 118, 502
MmeI TCCRAC 1 cut(s) 328
MnlI CCTC 9 cut(s) 88, 179, 226, 484, 547, 600, 663, 786, 876
MroI TCCGGA 1 cut(s) 685
MseI TTAA 1 cut(s) 543
MslI CAYNNNNRTG 2 cut(s) 54, 746
MspI CCGG 1 cut(s) 686
MspR9I CCNGG 1 cut(s) 211
MvaI CCWGG 1 cut(s) 211
MvnI CGCG 1 cut(s) 313
MwoI GCNNNNNNNGC 2 cut(s) 232, 317
NdeII GATC 2 cut(s) 151, 682
NlaIII CATG 3 cut(s) 235, 242, 483
NlaIV GGNNCC 3 cut(s) 18, 199, 256
NmeAIII GCCGAG 1 cut(s) 500
PfeI GAWTC 1 cut(s) 657
PleI GAGTC 2 cut(s) 118, 502
PpsI GAGTC 2 cut(s) 118, 502
Psp6I CCWGG 1 cut(s) 209
PspGI CCWGG 1 cut(s) 209
PspN4I GGNNCC 3 cut(s) 18, 199, 256
PspPI GGNCC 1 cut(s) 213
RsaI GTAC 1 cut(s) 788
RsaNI GTAC 1 cut(s) 787
RseI CAYNNNNRTG 2 cut(s) 54, 746
SaqAI TTAA 1 cut(s) 543
Sau3AI GATC 2 cut(s) 151, 682
Sau96I GGNCC 1 cut(s) 213
SchI GAGTC 2 cut(s) 118, 502
ScrFI CCNGG 1 cut(s) 211
SetI ASST 9 cut(s) 46, 84, 167, 172, 180, 228, 267, 381, 396
SfaNI GCATC 1 cut(s) 841
SfcI CTRYAG 2 cut(s) 270, 598
SinI GGWCC 1 cut(s) 213
SmiMI CAYNNNNRTG 2 cut(s) 54, 746
SmlI CTYRAG 1 cut(s) 790
SmoI CTYRAG 1 cut(s) 790
Sse9I AATT 5 cut(s) 115, 298, 351, 525, 825
SsiI CCGC 1 cut(s) 570
SspI AATATT 1 cut(s) 734
SspMI CTAG 1 cut(s) 89
StyD4I CCNGG 1 cut(s) 209
StyI CCWWGG 1 cut(s) 161
TaaI ACNGT 1 cut(s) 702
TaqI TCGA 5 cut(s) 122, 305, 655, 833, 849
TasI AATT 5 cut(s) 115, 298, 351, 525, 825
TfiI GAWTC 1 cut(s) 657
Tru1I TTAA 1 cut(s) 543
Tru9I TTAA 1 cut(s) 543
TspDTI ATGAA 1 cut(s) 255
VpaK11BI GGWCC 1 cut(s) 213
XapI RAATTY 1 cut(s) 825
XbaI TCTAGA 1 cut(s) 88
XspI CTAG 1 cut(s) 89
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.